|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070557 ID=TCONS_00070557|Name=TCONS_00070557|organism=Clytia hemisphaerica|type=transcript|length=1210bp
ATAGAAGCAaagataatttaaaaaaaacgtaaaaaaacatGTCAACACTA
TCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCGGC
CCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAGCG
ATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGgaagaaa
aaattgataaaGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGGGC
ATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACGAC
GAAAGTTACAGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGT
TACGAAATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGTT
GATGCAGACGATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCATAG
CAATGGCTGGTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAGCT
TTAGACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAACA
TTTGAGAGAAGCAGCAAGAagattgaaacaaaaacaattgcTTCAAGCCA
CACGATACAAAGGAACTGTCAAATTTTGAGTTCATTATTCGTCTGTTTCT
TTCGAAAAGGATAGAGAAACTTGGCCCCTTGGCGTGGTTATTTCTCTGGT
TGAAGGAAAGGGTGTCTGAAGGAAAAGGGGCATTTCCGATTTGAAGATTA
TGGAAGAAGAATTATGGCCAGGAGATTTCACTTACCCAAATTACTCAACA
GATTAACTTCTTGGAAATCCTGTTGTCAATCAATTTAATTCTTTAAGTTG
AGCGAACGACTTATATCTAACTATTCAATGGTTTGGGACTAGTCGAGAGA
TGAAGTCTTTTGCTCTATTTCATTGAAACATAGAATGAAAATGAAgttaa
aatcaatatttttgatgAGTACTCACAAAGTCATATATTTACATACCTTC
CAACGGTAATACGGATCATCGACACGATGCGACTCAAAGACTTCAATATG
AAGCGCCAAAACTTTAAATACTACAATGGTCTACGGTTACGtgataaaaa
tatacaattttctGGATAAAAGTATTAAATTGATATGATATAATATGGTA
TAAGATGTAGAATATATATGTTATGATCATGAAGTTACtctatgaaatat
tttttaaatc Run BLAST on NCBI transcript from alignment at scaffold_56:787292..794047- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070557 ID=TCONS_00070557|Name=TCONS_00070557|organism=Clytia hemisphaerica|type=transcript|length=6756bp|location=Sequence derived from alignment at scaffold_56:787292..794047- (Clytia hemisphaerica)
ATAGAAGCAAAGATAATTTAAAAAAAACGTAAAAAAACATGTCAACACTA
TCAACCAATGAAGTGGCAGCAAAAAAACCGGCACCCGAACAAACTCCGGC
CCAGACCTCAAACCCGAAGGAACCTAGTACCCAACCCTCCACGTCAAGCG
ATGCAGCTGGTTCAAGTAAGAGTACTGGGGGAGAGGGTAGTGGGAAGAAA
AAATTGATAAAGAGCACTTCTTCGGTGAGCGACCTTCCCATGGCAGGGGC
ATCTATGGACAATGATTCTGCAGTTTCTGAGGAACAAGAAGTGGAACGAC
GAAAGTTACAGTAAGGCTTTTTTTCCTTTGCACATAGTATGGATTGTAGG
TAGGAAACTTCTAATAGATGGAGTTAGATCTTAGAGAAGCATCTCCAAAC
TATGATAGAGCTTTTTTGTGGAAAATAAATGTTATTGGTATTTTTTAAAT
TAAATAATACATTATAAAACTAGCGTACAATGAGGCTGCTTTAGTGATGG
CTGTTGGAAACTAATTGGATTTAGGACTTGTAATCACACCTCAATTAAAA
CAAAATTAGCATTGACTTCACTCGATTTAAGAAGGATTATTTGCCATTTG
TTGTGATATCTCCGCCAACCTGCGCTGATTGAAGTAACATCTCGTATTTT
TTTCGGGCTTGCAAACGATAACGTAACATTTCTTGCCGTATAAGAACACC
ACGTAGAATATACTATTACACACTACTATCAAACAATGCACAAATTCTTT
ATCCTCGATTTCCCGAAAATATCCGATCGGGTAACTGATGATGAATGTTA
GTGTTGTAACCATGGTCGCATAGACAAGAGACATAGCATCGTTCATCGGT
CCAGGTAGGCGGCGACCACGGAACGCTTGCGTTAGACAAACTAACTGAGC
GATGATAAGGAAGCCTGTGATGACGTTTAGATGAAGTTGGACGTCTCCGT
AAAAAGTTCTTGTCATGTTTTCTTTGTCTAGTATGATGCTTATCCTTGGC
TTTCTGATAAAATTCAATATGTAGAAAACACTGTTGGTGACCAATAGAAA
TATGAAAACGGTGAATACTTGGACGACTATCGTTCTTCGTGCCTCGCCCC
CTGTCAATTGTATGTTAGAAGTGAAAGCATCAATCAATTTCTGTGATTTT
GTATACACGAAAGCGAGGTTGGCAGTGTAAAGAAGTGATAGATTCAGGAA
CTTTGCAACAGTTTTTGTTTTATCTATGTCGTCGTGAAGATAGACAAAAC
AGCTGAATAGAATGGAAAGCAAGATGGTTCCGAGATGAAGAAACGAGAAG
AAAACATCAGAAACTTTCACTGTCGGTGTTTGTCGGTGAATGATGAAAAT
GACCAGCGTTGTCATGGTGATGAACACTCCAAGAGTTGTTAGTAGAAGTA
TTGTAATCTTTTGATGGTGATTGAATTTTAAATATATGTTTGTGAATGGA
TCTACGCATTCAGTTCTCAAGACGTTTGCGCTGCTTCGAATCCCAAAACA
AGTGGTACAAGCTTCATTCCCGAAGTTGTTCTTGATCTGGTTCTGAGGAC
ATAACTCGCATTTAAATCCAAGCTCTGATTGGATGAACTTGTCAGAACTT
TCGATCTCACCATAAACCCTTTGGAAGCCTGGTGAACAGTTTAGTTTAGC
GAAAGGTAATGGGTTTCGGTATTTGCTCAAAAATATATCTGACGAATAAG
TTTCAATAAAAGGCTCCCAATTAGGATCCTCATTCCCTTTATTCTTCTCA
AGAATTTTATTAAAAGGTATCATGAAATCTTTAGTTTTTTTCTCTAAAAA
CACCATCATCATGGCGCCTTTGAGTGCTTGTATCTTATCGAAGCTTGTGA
TGACAGTTTTGTTTTGCACATGCTCGACAGCAATGCCAAGAAAAGATGCC
AACAGAAGCACATGTCTAATTGCGAGTAACTCTGTCAATTCGAAGATGCT
GTTCGCCACATCTTCCTGTAGATCTCGTCGCAACTTGTAGCGTTGGAAAT
TCTCCAAGCTGAACCAATGATCATGTGTGTTGAAGTCNGTGATTGAATTT
TAAATATATGTTTGTGAATGGATCTACGCATTCAGTTCTCAAGACGTTTG
CGCTGCTTCGAATCCCAAAACAAGTGGTACAAGCTTCATTCCCGAAGTTG
TTCTTGATCTGGTTCTGAGGACATAACTCGCATTTAAATCCAAGCTCTGA
TTGGATGAACTTGTCAGAACTTTCGATCTCACCATAAACCCTTTGGAAGC
CTGGTGAACAGTTTAGTTTAGCGAAAGGTAATGGGTTTCGGTATTTGCTC
AAAAATATATCTGACGAATAAGTTTCAATAAAAGGCTCCCAATTAGGATC
CTCATTCCCTTTATTCTTCTCAAGAATTTTATTAAAAGGTATCATGAAAT
CTTTAGTTTTTTTCTCTAAAAACACCATCATCATGGCGCCTTTGAGTGCT
TGTATCTTATCGAAGCTTGTGATGACAGTTTTGTTTTGCACATGCTCGAC
AGCAATGTCAAGAAAAGATGCCAACAGAAGCACATGTCTAATTGCGAGTA
ACTCTGTCAATTCAAAGATGCTGTTCGCCACATCTTCCTGTAGATCTCGT
CGCAACTTGTAGCGTTGGAAATTCTCCAAGCTGAACCAATGATCATGTGT
GTTGAAATTGTGAAAACTTGTTTGGTCATTTTCAAAAGATAACATGTCAT
GAGCGATCAAGGACGTTTTGTTGGTTGTTTCTACATTAACGTCTAATATC
GCTAGAAATTCTTTTTGAAAAGGTCCAAATAGAATAATGGCTGACTCGCC
CTTTCGCCAACGATTTAAGAGGTCTGATAGAATGTAGCCTTCAACATGAA
CTTTTTCCGCATTGATGACGATTTTCTGCAAATGAAATTCTTTTCTACCA
GCCAATTGGTCATAAGTACCATTGTAGTAATTGTTGAAGATCGGTTTCAA
TACATCATCGTGGACTAAAAGTAGGGTCAAATCTTTCCATTGTAATTTCT
CTAATACATATATGAGATACCTGGTATAGTCATTTATCTTCAAATCGTCA
TCAGGGAATGCGACCGTCAAAAATGGTTCCCCAGTCATAAATTGCTTGAA
CATTTTGGCTGTTTTTGTACTATCAGCATAGAAGACTACAAAAGCCAAAT
TGGGTATTCTGCATTCTCTGTTTTGGTCGCAAGCAATGTGGAATGTGTGG
CCCAGAAGAATTTCCAAAGCTGCTTTCAAAGACTCTTCTGTGTTGTTGCA
TTTATAATGGAAACTATGGTATTTCAATTCGATGTAACGCATGTCTGTAT
TGAGTCCAGTAATGTTTGCTCTTAAAAAACTGTCTGCCTCCTGTGTATTA
TCTGAACAGTTTGGTAAGATAGCCACGACGTGATAAGTGAGTATGTGCTT
GCTTAAAGCAATCTGTATTAAACTGGTAAAGAATAGAACGCCAAGAACTT
TACAATTCATTTTTATCATCTCTCTGAGCAACTACTACGTTTCTTCTGAA
TCAAAGATATGTTATATGTTGGGATACTTGTTAGTTTGGTCTCGATATCT
AATCAAATATTGATTTCACCTGCCCGAATAAAAACTTTCTGTTGTTAAAT
TTTAATAGGTTCTTTTTTTTTCAGTCCAATTATCATATGCTTTTGTAGCT
TGATTCGCACTTTGGTACTCAATATATTGATTAAAAAATACTATACAAGA
AGAAGTTTCTCGTGGCTTAGATCACGAGAATTACGCAAACGTTTTGAGAA
TTTTTCTCCCATCATCGGTCATTCTGGAAGTTTTTCTCTCTAGTTTACTT
TTGCCACAATAAGCTTCCAATATGCATATCACTTGGTCGATAGACTCAAA
ATTACTTAAACTTATGGTACTTGTTATGGAAAAATTTGGGTCGTAATTGA
GTCAATTGAAAGGTCATTCTCGTCTTCCTCTACAGTGTCACTTTCGATTT
ATTTACCGCACAAAATTACCATATTAGGCCCCGACCAGTCCAAACAGAGT
AAAATCGTTCCTTGTTCTAAACTTGGATAACATGCATTGGATTTTAACCA
TATATTTCTCGCTTTGAGATATGAATAGAAGACCAGTACAGTATAATAAC
TCCAGCATTCTTTTTCTTTCCCTGCTGATTACTACTCCATCCATTACTTT
ACAGGATGTTGGTATCTGCGTTCAGCGAAGATCAGTTGAACCGTTACGAA
ATGTACCGAAGAGCTTCCTTTCCAAAAGCTGCCATTAAAAGGGTGAGTGG
CATATTGACCCAATATTAGAATTGTTAACTTGAAATATCAATGTGCAAAG
GGATTAAATTTCTTGGGGGCCTTTCCATGATATATTAACGATTTTGTGTC
TTTCTTTACCAGTAAACATTTTAAAAGTGGTATTTGTGCCTTTTTAACTT
TCTACTAAGAAACAATTTTTGTGGATAACACGCAAACGCCTCGAATTTAC
GAGATAGAGCATTGGTATCAATTCTTTTTCCTTAGACAAAACATTTTTGT
TTATTCGACCGATTAGACACACTTCCGGGTCAAAAGCACGAATAAAAAGC
TTTTCAAAGACCGAAATTGGACCGAGTCTTTGTCAATCTTGATATAATCC
TTCTTCCCGTGTTTAATCGTTTATTACCCCCTTTTTTAGTTGATGCAGAC
GATCACGGGCGGTGCGTCCGTTCCGCCCAATGTTGTCATAGCAATGGCTG
GTATCGCCAAGGTATTTGTCGGGGAGGTCTCAGAAGAAGGTTAGTTATTA
CATTCTCCATTAGACCATGAATATCCTTTCAGAAGAGATAGACATTACAA
TAAGGTATACAAGGCGAGGTATATTTTCCATTTTTGGGAAGTGGAGATTT
TCGTTTTTGGTAACAAGTTCCGATAGAGCCGTTACATTTTATCCGATTTT
TAGGCTTCAGAAATTCTAATTTCACTTTTCTTTAAATTTGAATTCTAAAT
TCGCATTATCTAGTCAAACTTGTATACTTTTTGCCACACCAAGTATCAGA
TGGCGCAGTATTGTTATTGAACTGATGATTCTGGGAAGCGCTCGCACACC
CATGGCTGAAAAGTAGGGAACGTTGGTGAAAATGCGCAACCAACTTTCTA
GTACCCTAAAAACCAGAACCCTTTGATTTGTTCGAAAAAAGTCTTATATT
GATTTTCGTATTTTATTAGCTTTAGACGTAATGGAGAGTTGGGGCGAGAC
TGGACCCATTGAACCGAAACATTTGAGAGAAGCAGCAANAACATTTTAAA
AGTGGTATTTGTGCCTTTTTAACTTTCTACTAAGAAACAATTTTTGTGGA
TAACACGCAAACGCCTCGAATTTACGAGATAGAGCATTGGTATCAATTCT
TTTTCCTTAGACAAAACATTTTTGTTTATTCGACCGATTAGACACACTTC
CGGGTCAAAAGCACGAATAAAAAGCTTTTCAAAGACCGAAATTGGACCGA
GTCTTTGTCAATCTTGATATAATCCTTCTTCCCGTGTTTAATCGTTTATT
ACCCCCTTTTTTAGTTGATGCAGACGATCACGGGCGGTGCGTCCGTTCCG
CCCAATGTTGTCATAGCAATGGCTGGTATCGCCAAGGTATTTGTCGGGGA
GGTCTCAGAAGAAGGTTAGTTATTACATTCTCCATTAGACCATGAATATC
CTTTCAGAAGAGATAGACATTACAATAAGGTATACAAGGCGAGGTATATT
TTCCATTTTTGGGAAGTGGAGATTTTCGTTTTTGGTAACAAGTTCCGATA
GAGCCGTTACATTTTATCCGATTTTTAGGCTTCAGAAATTCTAATTTCAC
TTTTCTTTAAATTTGAATTCTAAATTCGCATTATCTAGTCAAACTTGTAT
ACTTTTTGCCACACCAAGTATCAGATGGCGCAGTATTGTTATTGAACTGA
TGATTCTGGGAAGCGCTCGCACACCCATGGCTGAAAAGTAGGGAACGTTG
GTGAAAATGCGCAACCAACTTTCTAGTACCCTAAAAACCAGAACCCTTTG
ATTTGTTCGAAAAAAGTCTTATATTGATTTTCGTATTTTATTAGCTTTAG
ACGTAATGGAGAGTTGGGGCGAGACTGGACCCATTGAACCGAAACATTTG
AGAGAAGCAGCAAGAAGATTGAAACAAAAACAATTGCTTCAAGCCACACG
ATACAAAGGAACTGTCAAATTTTGAGTTCATTATTCGTCTGTTTCTTTCG
AAAAGGATAGAGAAACTTGGCCCCTTGGCGTGGTTATTTCTCTGGTTGAA
GGAAAGGGTGTCTGAAGGAAAAGGGGCATTTCCGATTTGAAGATTATGGA
AGAAGAATTATGGCCAGGAGATTTCACTTACCCAAATTACTCAACAGATT
AACTTCTTGGAAATCCTGTTGTCAATCAATTTAATTCTTTAAGTTGAGCG
AACGACTTATATCTAACTATTCAATGGTTTGGGACTAGTCGAGAGATGAA
GTCTTTTGCTCTATTTCATTGAAACATAGAATGAAAATGAAGTTAAAATC
AATATTTTTGATGAGTACTCACAAAGTCATATATTTACATACCTTCCAAC
GGTAATACGGATCATCGACACGATGCGACTCAAAGACTTCAATATGAAGC
GCCAAAACTTTAAATACTACAATGGTCTACGGTTACGTGATAAAAATATA
CAATTTTCTGGATAAAAGTATTAAATTGATATGATATAATATGGTATAAG
ATGTAGAATATATATGTTATGATCATGAAGTTACTCTATGAAATATTTTT
TAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070557-exon-scaffold_56-1575043694:793738..794047 | TCONS_00070557-exon-scaffold_56-1575043694:793738..794047 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1575043694:789806..789893 | TCONS_00070557-exon-scaffold_56-1575043694:789806..789893 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1575043694:788434..788533 | TCONS_00070557-exon-scaffold_56-1575043694:788434..788533 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1575043694:787292..788003 | TCONS_00070557-exon-scaffold_56-1575043694:787292..788003 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1510915933:793738..794047 | TCONS_00070557-exon-scaffold_56-1510915933:793738..794047 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1510915933:789806..789893 | TCONS_00070557-exon-scaffold_56-1510915933:789806..789893 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1510915933:788434..788533 | TCONS_00070557-exon-scaffold_56-1510915933:788434..788533 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1510915933:787292..788003 | TCONS_00070557-exon-scaffold_56-1510915933:787292..788003 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1491911889:793738..794047 | TCONS_00070557-exon-scaffold_56-1491911889:793738..794047 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1491911889:789806..789893 | TCONS_00070557-exon-scaffold_56-1491911889:789806..789893 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1491911889:788434..788533 | TCONS_00070557-exon-scaffold_56-1491911889:788434..788533 | Clytia hemisphaerica | exon |
| TCONS_00070557-exon-scaffold_56-1491911889:787292..788003 | TCONS_00070557-exon-scaffold_56-1491911889:787292..788003 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:787292..794047 - |
Blast
BLAST of TCONS_00070557 vs. Swiss-Prot (Human)
Match: TAF11 (Transcription initiation factor TFIID subunit 11 OS=Homo sapiens GN=TAF11 PE=1 SV=1) HSP 1 Score: 154.836 bits (390), Expect = 4.954e-44 Identity = 74/113 (65.49%), Postives = 93/113 (82.30%), Query Frame = 3
Query: 288 EVERRKLQMLVSAFSEDQLNRYEMYRRASFPKAAIKRLMQTITGGASVPPNVVIAMAGIAKVFVGEVSEEALDVMESWGETGPIEPKHLREAARRLKQKQLLQATRYKGTVKF 626
E E +K+Q+LVS+FSE+QLNRYEMYRR++FPKAAIKRL+Q+ITG SV NVVIAM+GI+KVFVGEV EEALDV E WGE P++PKH+REA RRLK K + +++K + F
Sbjct: 100 EDEIQKMQILVSSFSEEQLNRYEMYRRSAFPKAAIKRLIQSITG-TSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLKSKGQIPNSKHKKIIFF 211
The following BLAST results are available for this feature:
|
