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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070553 ID=TCONS_00070553|Name=TCONS_00070553|organism=Clytia hemisphaerica|type=transcript|length=2402bpRun BLAST on NCBI protein sequence of TCONS_00070553-protein >TCONS_00070553-protein ID=TCONS_00070553-protein|Name=TCONS_00070553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=500bp MAERLWFLKVIYLIILSLPSLLRGQNKELKFNDPGLKDQWYLGKNAADDRRun BLAST on NCBI transcript from alignment at scaffold_56:725596..741268- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070553 ID=TCONS_00070553|Name=TCONS_00070553|organism=Clytia hemisphaerica|type=transcript|length=15673bp|location=Sequence derived from alignment at scaffold_56:725596..741268- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_56:725596..741268- >TCONS_00070553 ID=TCONS_00070553|Name=TCONS_00070553|organism=Clytia hemisphaerica|type=CDS|length=19539bp|location=Sequence derived from alignment at scaffold_56:725596..741268- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070553 vs. Swiss-Prot (Human)
Match: PCSK6 (Proprotein convertase subtilisin/kexin type 6 OS=Homo sapiens GN=PCSK6 PE=1 SV=1) HSP 1 Score: 263.462 bits (672), Expect = 1.278e-74 Identity = 179/492 (36.38%), Postives = 273/492 (55.49%), Query Frame = 3
Query: 297 RGQNKELKFNDPGLKDQWYL---GKNAADDRHNNIWSAWQQGATGKGVRIALIDNGVEVTHNDLLDNIVTESSFNYGDFNRDLQPR--KTRTPGHGTKMAGIIGMSANNNQCGVGIAYEAKISALTF---GWTALAHAQSYTHRLNETDIYVSTTGPPDNGQFIAKHTKQVMKAYVKGITKGRRGLGSIYIRTSGSGGYHGDHCGADGTVNNLYSIAVASAAKDHSQTLLGEGCASILTSVYTQQTKWFVKGFTKDVITTDLRGSCTINSGGXXXXXXXXXXXXXXXXXXNQQLTWRDVQYLIIKSSNQNNLPVT-WYTNSVGLRFNSRYGFGILDAGKMVTLSKTWKTTGVIMVSQKVLVT------KSMALTS-LKKNELINLPIKITKSNIKCLEHVSLLTSIRFTKRGQIALYLTSPSGTVTELLGYRYKDXXXXXXXXXXXXXVHFWGEKPLGKWLVQI------VLNGAGIGQVRRMFIELFGSSN 1706
R + L FNDP + WYL KN+ N+ +AW++G TGK V + ++D+G+E H DL N + +S++ + D PR + HGT+ AG + SANN+ C VGIAY AKI + T + A+S R N DIY ++ GP D+G+ + + +A+ GI KGR+GLGSI++ SG+GG GD+C DG N++Y+I+V+SA ++ + E CAS L + Y+ + + ++TTDLR CT G+S +A MV+ I+ALAL N QLTWRDVQ+L++K+S +L + W N G + + YGFG++DA +V +K W + SQ + V +S+ L L+ L + + + + LEHV + TSI +RG + +YL SPSGT ++LL R D S F+ W F +VH WGEK G+W ++I V N G+++ + L+G++
Sbjct: 152 RSDPQALYFNDPIWSNMWYLHCGDKNSRCRSEMNVQAAWKRGYTGKNVVVTILDDGIERNHPDLAPNYDSYASYDVNGNDYDPSPRYDASNENKHGTRCAGEVAASANNSYCIVGIAYNAKIGGIRMLDGDVTDVVEAKSLGIRPNYIDIYSASWGPDDDGKTVDGPGRLAKQAFEYGIKKGRQGLGSIFVWASGNGGREGDYCSCDGYTNSIYTISVSSATENGYKPWYLEECASTLATTYSSGA-----FYERKIVTTDLRQRCTDGHTGTSVSAPMVAGIIALALEANSQLTWRDVQHLLVKTSRPAHLKASDWKVNGAGHKVSHFYGFGLVDAEALVVEAKKW----TAVPSQHMCVAASDKRPRSIPLVQVLRTTALTSACAEHSDQRVVYLEHVVVRTSISHPRRGDLQIYLVSPSGTKSQLLAKRLLDLSNEGFTNWEFMTVHCWGEKAEGQWTLEIQDLPSQVRNPEKQGKLKEWSLILYGTAE 634 The following BLAST results are available for this feature:
BLAST of TCONS_00070553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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