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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070515 ID=TCONS_00070515|Name=TCONS_00070515|organism=Clytia hemisphaerica|type=transcript|length=2312bpRun BLAST on NCBI transcript from alignment at scaffold_56:249841..263995- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070515 ID=TCONS_00070515|Name=TCONS_00070515|organism=Clytia hemisphaerica|type=transcript|length=14155bp|location=Sequence derived from alignment at scaffold_56:249841..263995- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070515 vs. Swiss-Prot (Human)
Match: CO6A6 (Collagen alpha-6(VI) chain OS=Homo sapiens GN=COL6A6 PE=1 SV=2) HSP 1 Score: 140.198 bits (352), Expect = 7.647e-34 Identity = 189/763 (24.77%), Postives = 334/763 (43.77%), Query Frame = 2
Query: 86 DIAFVYEIPNAKAATTFNYLRKIVGILNKDRTSSD----CNQISLIVAGKDLHVVQPLSCGEACSASAIKKLDLIERDLDDSYKTFTNEIRVREALETIGATIFSADKGSRVDAKKSIVLMLTTPQ--EDNVEMKSMLNKLHNEYAIVVIGIGTKLTNDYLLSIANRG--NRILKLRDLQELFPGKAAYKILVELLNDPDY------DRYKTLAEAPRPDLGCEFV--ADIAFLIDSSNSIRLEYLNQLQ-FVQFITASFGLKKNGTHAGVVVFSDIRPYSQLEIKFDQYYDLKPFLEHVERLPFYAYRTRIDLAFEIADKELFSKAGGMRDN-VPKVIFLITDGSQNPTIDRRAGLTFDPVAASQPLIDRGIQIFSIGVGNRSDNINYDELVKIARNENQVKIAETAADLASEQFVKE---LADITCRIIPTPPPKPSC-DVKVDVGFVLDSSGSL-RDDYSKEKQFLKTLAAAFGVSEEGARAGVITFSYDTEHSIKLNDYFNIVSFSEAVDKIPLMGHTTRIDKXEAVDKIQLMGHTTRIDKALRLTQSQMFSIANGGRPGVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSQGYKVLAVGIGDGVNRTELAHITGEKSAVYTASSFDDL--ISPEFVGSMSKAGCEEAKKEVKPLCEVKVDVGFVLDSSGSLRND-YDKEKNFLKALAATFSVSEDGARAGVVTFSYDTEHSIKLNDHYDLFSFSDAVDKIPLMGHTTRIDKALRLTQSQMFSIANGGR 2296
D+ F+ ++ + F+YL+ G L + ++ D C ++ L+ + V+ LS G I K ++++ + S +T + A++ + +FSA GSR + + +L T + EDNV K+ +N I +GI ++ L IA+ + KL+ +L + L +L N + +R +TL GC ADI LID S S + ++++ F+ + F + + G V ++D LE + ++Y + + + +E + T A L KA R N VP + ++T+G +I + + L + I++++IG+ + NQ ++ E A + +V + L DI +++ + +C ++K D+ F++DSSGS+ +++SK K F+K L + + + + GV+ FS + +LN + + S A+D+ M H +G TT AL SQ FS G RP + K +I++TDG + QD+ ++P V LR +G + +VG+ G N T+L I+G V+ +FD L I + V + E + EV +DV FV+DSSGS+ D Y+ K+F+ L V ++ R G + ++ D E L+D + MG +T +AL + MF+ A G R
Sbjct: 229 DVVFLLDMSINGSEENFDYLK---GFLEESVSALDIKENCMRVGLVAYSNETKVINSLSMG-------INKSEVLQHIQNLSPRT--GKAYTGAAIKKLRKEVFSARNGSRKNQGVPQIAVLVTHRDSEDNV-TKAAVNLRREGVTIFTLGI-EGASDTQLEKIASHPAEQYVSKLKTFADLAAHNQTF--LKKLRNQITHTVSVFSERTETLKS------GCVDTEEADIYLLIDGSGSTQATDFHEMKTFLSEVVGMFNIAPHKVRVGAVQYAD---SWDLEFEINKYSNKQDLGKAIENIRQMGGNTNTGAALNFT-LSLLQKAKKQRGNKVPCHLVVLTNGMSKDSI----------LEPANRLREEHIRVYAIGI----------------KEANQTQLREIAGEEKRVYYVHDFDALKDIRNQVVQEICTEEACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQ---MAH---------------IGQTTLTGSALSFV-SQYFSPTKGARPNIRKFLILITDG-EAQDI-VKEPAVV---LRQEGVIIYSVGV-FGSNVTQLEEISGRPEMVFYVENFDILQRIEDDLVFGICSPREECKRIEV-------LDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFS-DHMFTEARGSR 906 HSP 2 Score: 126.331 bits (316), Expect = 1.962e-29 Identity = 173/627 (27.59%), Postives = 266/627 (42.42%), Query Frame = 2
Query: 482 NKLHNEYAIVVIGIGTKLTND-YLLSIANRGNRILKLRDLQELFPGKAAYKILVELLNDPDYDRYKTLAEAPRPDLGCEFVADIAFLIDSSNSIRLEYLNQLQ-FVQFITASFGLKKNGTHAGVVVFSDIRPYSQLEIKFDQYYDLKPFLEHVERLPFYAYRTRIDLAFEIADKELFSKAGGMRDNVPKVIFLITDGSQNPTIDRRAGLTFDPVAASQPLIDRGIQIFSIGVGNRSDNINYDELVKIARNENQVKIAETAADLASEQFVKELADITCRI-----IPTPPPKPSCD-VKV-DVGFVLDSSGSL-RDDYSKEKQFLKTLAAAFGVSEEGARAGVITFSYDTEHSIKLNDYFNIVSFSEAVDKIPLMGHTTRIDKXEAVDKIQLMGHTTRIDKALRLTQSQMFSIANGGR--PGVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSQGYKVLAVGIGDGVNRTELAHITGEKSAVYTASSFDDLISPEFVGSMSKAGCEEAKKEVKPLCEV-KVDVGFVLDSSGSLR-NDYDKEKNFLKALAATFSVSEDGARAGVVTFSYDTEH-SIKLNDHYDLFSFSDAVDKIPLMGHTTRIDKALRLTQS----QMFSIANGGRPGV 2305
N+L E+ I V IG K N L IA R+ + D + L D R + + E + E ADI FL+DSS SI E ++++ F++ + + + + GVV FSDI ++ E + +++ ++++ T A + FS G R N+ K + LITDG + A + L G+ I+S+GV N +L +I+ V F E DI RI P+ C ++V DV FV+DSSGS+ D+Y+ K F+ L V + R G + ++ D E L+D+ T+++ + Q MG +T +AL + MF+ A G R GV +++IV+TDG ++ D A+ A+ LR +G VLAVGI DG N EL + G + +F L ++ + C +K + CE+ KVD+ F++D S S++ ND+ K K FL ++ F VS + R G FS DT H L S ++ I + T I ALR + M S N G P V
Sbjct: 558 NRLREEH-IRVYAIGIKEANQTQLREIAGEEKRVYYVHDF--------------DALKDI---RNQVVQEICTEEACKEMKADIMFLVDSSGSIGPENFSKMKTFMKNLVSKSQIGPDRVQIGVVQFSDI---NKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFVS-QYFSPTKGARPNIRKFLILITDGEAQDIVKEPAVV----------LRQEGVIIYSVGVFGS----NVTQLEEISGRPEMV-------------FYVENFDILQRIEDDLVFGICSPREECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDF------------------GTKLEVISVLQNDQAMGGSTYTAEALGFS-DHMFTEARGSRLNKGVPQVLIVITDG-ESHD--ADKLNATAKALRDKGILVLAVGI-DGANPVELLAMAGSSDKYFFVETFGGLKG--IFSDVTASVCNSSKVD----CEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFS-DTYHPEFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVEHYFRPDMGSRINTGTPQV 1105 HSP 3 Score: 96.2857 bits (238), Expect = 3.964e-20 Identity = 137/522 (26.25%), Postives = 236/522 (45.21%), Query Frame = 2
Query: 383 FSADKGSRVDAKKSIVLMLTTPQEDNVEMKSMLNKLHNEYAIVV-IGI-GTKLTNDYLLSIANRGNRILKLRDLQELFPGKAAYKILVELLNDPDYDRYKTLAEAPRPDLGCEFVADIAFLIDSSNSIRLEYLNQLQ-FVQFITASFGLKKNGTHAGVVVFSDIRPYSQLEIKFDQYYDLKPFLEHVERLPFYAYRTRIDLAFEIADKELFSKAGGMRDN--VPKVIFLITDGSQNPTIDRRAGLTFDPVAASQPLIDRGIQIFSIGVGNRSDNINYDELVKIARNENQVKIAETAADLASEQFVKELADITCRIIPTPPPKPSCDV-KVDVGFVLDSSGSLR-DDYSKEKQFLKTLAAAFGVSEEGARAGVITFSYDTEHSIKLNDYFNIVSFSEAVDKIPLMGHTTRIDKXEAVDKIQLMGHTTRIDKALRLTQS----QMFSIANGGRPGVSKIVIVLTDGSQTQDVGAEDPGNVAEELRSQGYKVLAVGIGDGVNRTELAHITGEKSAVYTASSFDDL 1915
FS KG+R + +K ++L+ +D V+ +++ L E I+ +G+ G+ +T L I+ R + + + + IL + +D + E R + V D+ F+IDSS SI + N ++ F+ + + KN G + ++D F ++ L++ + + Y A +D +F++A G R N VP+V+ +ITDG + D+ A ++ L D+GI + ++G+ D N EL+ +A + ++ ET L +D+T + + K C++ KVD+ F++D S S++ +D+ K K+FL ++ F VS R G FS DT H + PL + ++ I+ + T I ALR + M S N G P ++++VLTDG Q+QD A+ AE LR +G + +VGIGD V+ +L ITG T +FD+L
Sbjct: 712 FSPTKGARPNIRKFLILITDGEAQDIVKEPAVV--LRQEGVIIYSVGVFGSNVTQ--LEEISGRPEMVFYVEN----------FDILQRIEDDLVFGICSPREECKRIE-----VLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRFGALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAE---ALGFSD-HMFTEARGSRLNKGVPQVLIVITDGESHDA-DKLN-------ATAKALRDKGILVLAVGI----DGANPVELLAMAGSSDKYFFVETFGGLKGI-----FSDVTASVCNSS--KVDCEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQFS-DTYHP-----------------EFPLGTFIGEKEISFQIENIKQIFGNTHIGAALREVEHYFRPDMGSRINTGTP---QVLLVLTDG-QSQDEVAQ----AAEALRHRGIDIYSVGIGD-VDDQQLIQITGTAEKKLTVHNFDEL 1164 The following BLAST results are available for this feature:
BLAST of TCONS_00070515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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