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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070497 ID=TCONS_00070497|Name=TCONS_00070497|organism=Clytia hemisphaerica|type=transcript|length=1339bp ttttttccgaatattttttcaaattgtctGATTCATGATTTAAAggattc atttttttcagaaatagtttgattatatttttgacattatttatatcatt ttgacataatttttgtcattttttcattctttttgatTGCTATGGAATTT CTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAATGTCGAGTA TTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATGTGTTGATCA AGCGGCCCGCCAAAGTGGTGAGCGAGCGCAATCAGATGACGGAGAGCGGA ATACGAGATATTTTTCAACTCTACGGTGAAGGGAGAGGAAATTCAGTCCA AGCTTCTCAACTGAGAGTGATTTTCGAGCAGATGGGTTTTCCGATGTCAG ACGATCATTGTGAGAATTTGATCGAAACTGCTGACCAAGATGGCGATGGA GCTTTggatttgaaagaatttgtCAACTTCGTTTTGTATGGAGTGCTCAA TGTGGAAGATACTGAGGATGAAATAATGGAATGCTTTCGTGTTTTTGATC CTGATGAAACTGGCTTCATCCCGTCACAAGAGTTACGACGCATAATGACA CAACTTGGAGATGAACTGACCGACAGTGAGATTAATAAAGTCATTCAACA GTCAGATATAGATGGAGATGGGTCAATCAACTATGCTGaatatgtcaaaa aaatttatctttccAACCATCGATACGAGGCAGTCAATAAAAGAgattgg gaaaatattttggccaaaatgAGAAATGTAAGCTTGGAAAATAATACTCC TGAAGCTGAAGCTTAGAACTTTCTCCGTTGGGAAAGTTCGCAAAATGGAC CCTACACTGGGCTGATGTAATCtgtaatcttttgaaattttattgtcaaa tatttatcaatttttattgttattcttttttataaaaacatccaaatttt ttgaattattcggatgttcttaactgttttctttttaagcctagaaatgt tcttaacatgttaaaaaagcgtgtattcttaCCCCGAATCTACCTGAGCT GGGGGTAAAGTTAATCTGTTGAACGTTCATAGAgtctttttgtttggttt tctcTTATTTAAGTCTGTTGTGTTTCCGGCATAAAATCGTGAAATTCAAT TCCGGCATAGCTATCATGAAAAGTATTGGAAAGACTGTCAGCTGCGATTA CATCCCAAGAAATTAACATCCAAAGGTCTAAGACATCGTATTTAATTCCG ATCCTTCTCACCGGCGACGAAAAAAAGTTACACTAAAAAGGACCCAAgta aaaaaaggatttgaaTGCTCAATTTATCCCAATTTTAAA Run BLAST on NCBI protein sequence of TCONS_00070497-protein >TCONS_00070497-protein ID=TCONS_00070497-protein|Name=TCONS_00070497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MEFLSDGFFTRRHKVENVEYYLKESVKKMAERDVLIKRPAKVVSERNQMT ESGIRDIFQLYGEGRGNSVQASQLRVIFEQMGFPMSDDHCENLIETADQD GDGALDLKEFVNFVLYGVLNVEDTEDEIMECFRVFDPDETGFIPSQELRR IMTQLGDELTDSEINKVIQQSDIDGDGSINYAEYVKKIYLSNHRYEAVNK RDWENILAKMRNVSLENNTPEAEA Run BLAST on NCBI transcript from alignment at scaffold_56:117245..121126- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070497 ID=TCONS_00070497|Name=TCONS_00070497|organism=Clytia hemisphaerica|type=transcript|length=3882bp|location=Sequence derived from alignment at scaffold_56:117245..121126- (Clytia hemisphaerica) TTTTTTCCGAATATTTTTTCAAATTGTCTGATTCATGATTTAAAGGATTC
ATTTTTTTCAGAAATAGTTTGATTATATTTTTGACATTATTTATATCATT
TTGACATAATTTTTGTCATTTTTTCATTCTTTTTGATTGCTATGGAATTT
CTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAATGTCGAGTA
TTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATGGTAAGATAA
GAATTTAATTTTTGATTTTTGATTTTTTTCATTTCGAATTTTATTTTTAA
AGAAAAATCGGGTTATATCTTTTTCTGAAGGACTTTAAGTATTAAAACTT
AAATATTTGCATGGGTCACAGGCAAGAAACAACAAAACTTTATTTATTGA
TAAATTTTCTCTCTACTCTACGGTAGAGTATCTTCTGATCTAGACGCTCT
ACCATAGAGTAGAGATCCAAATATTTAAGTTTTAATAATGGAAAAGCAAT
CACTTTCACTGAAGAGTTTCATAACATTATGCTTTCTCATTCCAATATAA
GGTAGGTACTTGATCAAATCCAATCGCTCTCTGCTCTACAAAATCAATTT
TTACGAACAAAAGATTATTTCATTCATCTCTAGTAACAGGTTCAACTGCA
TTGGGCAAATCAATTTTATATACATACAGGGGGTGGTAGAATATTTCCAG
GGGGTCTAAAAGATTGATTTTAGTTCGCCCACCGTCACTTTAAGGTGTGA
AAAGAAATTTTCCACGGGGTTATTTGAAAGAGTTATTTTATCCACACATT
TAAAAGAAATATTTTTTGACGTAAAAAGGTTCGTTCACCCCCCCCCCCCT
GTATGGAAATTTAATGGAATAGCTCATTCTCCACGTTAGAGATAGTTACA
GTCGACGCTCTTTCTTTGATTCGACGTTTTACTATTCGGCATACTTCATT
ATTCGATAATATTGAAAGTCACCGTCAACAAGAAACTCCCATAAACGATA
CTCTAACATTTCTCGGTGAAAATCCGATTTTTCTTGTAAATCGAATCAGA
GAGCGTCAACTTTATTAACTCTTCTTTGCTGGCATTTGGAAACCACTCTC
TACGAAACTATTCTAAATACGCCGACACGGTTTCCTCGTGGTAGTAAAAA
AAGTGTGCATTTGAAGCGAATGGAATGGTTGCTGTTAAACGCATTTCCGT
ACTTTTTATTTTCCAGTGTTGATCAAGCGGCCCGCCAAAGTGGTGAGCGA
GCGCAATCAGATGACGGAGAGCGGAATACGAGATATTTTTCAACTCTACG
GTGAAGGGAGAGGAAATTCAGTCCAAGCTTCTCAACTGAGAGTGGTAAGC
TTAAGTGTTTTGTATTTACACGTTTATTTTTTTTTTCATTGAAGATTGGA
ATCAAGTCATGAAAACCTGGAGTATAAAATATCATCATCTATATGCTAAA
TAAGTTGAATTTCAAAAAAGCCAGTGTTCTTTCACCAAATTTTGGCTTAG
ATATAATTATTTGAGATACTAACAGTATAACTTTCCTTTGACAGTCGATG
GCCTTTAGGTCTTTGGAGGAGGGGGGTTAGGTTTTTCTGCTTGTGCAAGG
TGCTTTAAAAGTTCATCAAAGAGAGCTATTAAAAGAATCATACCTAATTA
CTCTGAGAGGCCCCCCAGCGGTAGTGATCACGATATCACACACTTTTGTG
TCTTTAATCAGGATTACGCAAATCAGGACAAAGAATGGACAATCATGCAT
TCCTTTGAAAAAGTCCAAATCACGTATAACGGCTCAAAAATCTTTCAAAA
AGTTTTAATCTCTCATCACGTAATCACGAAGAAAAAAATTTCCAAATCAC
GTAATCACGAAAACCGCTTGGGGGCATCCTCAGAGCTATTAAAAAAACTG
TTTGTATCAGACTACCTATCTATATTTTTGTACTAAAAGATCTTACAATC
CAAACTACAGTTGGTGCTCTCTAATTCGACGTTCTACTATTCGTTAGGCT
CCTTTTTCGATGAGATTTAAAGTTCCTGTCAGCAAGAAACTCTCATAAAG
GACGCCCCCTTATTCGATGAAAATCCAATTCCCCTTGAAGATCGAATTAG
AAAGCGTCGACTGTATACAAAAAATTCTCACTCTACTTAGATTTTCGAGC
AGATGGGTTTTCCGATGTCAGACGATCATTGTGAGAATTTGATCGAAACT
GCTGACCAAGATGGCGATGGAGCTTTGGATTTGAAAGAATTTGTCAACTT
CGTTTTGTATGGAGTGCTCAATGTGGAAGATACTGAGGTAAAAGTTTTAC
TCACCTATCAACCACAGTTATCTATATAAAACATTAGATATAGCTAATCT
GTCTTTCCCAAGCCCCGGTTGTAATGATAATAATATGCCATCTTTCCGAA
ATGTTGACACGAATAAATAGCAGTTCAGTGCCGGTAATTGTTTCAATCAA
AACAAACCTCAAGAGAATGGTCTTGATCGACTCTCCTCACACTAAGGGTA
GATAGTTTTTTTTCTAAACTCCTTTCATTATAACAGCACTTTCTTGTTGT
TATATTTGGCATTTCTAAACTTTTCTTTGATCTATTTTTGGGACTTGGTA
CTATTTCTCCAAATGTTTTATTCTGACACACTGTAGCACAGAGTTAGGGA
TTTCCGGTATCTAAAAATCTTGATAAATGCTCACCAAAGTATCACCAACC
TAGATTTAACAATCAAGTGAGAATTAATTGCCCTCCCAAACCAGTCATGG
TCCTTTTCAAGTTAATTCTCAGAAATGAGTCTGAATTTAATTGTTGTACA
CGTTTTTTTAAAGAACATTCTTTTTGAGTTTTAAGCCTAAAAATGTTCTT
AACATGTTCTTATTTTCCCCATTTTTTATGTATTTTTGTCCATTTTCCTA
AGAAATTGGCTGTCCTCAAAGCCTTAAAGTGTTCTTAACTTGTTCTTAAC
ATTTTGACCATCGAAGCCTTATGTTCTTATATGATTTGTTCTTATGAAAG
AAAGAAACACGTGTGCTCGTTGAAAAGATATTTGAAGCTTTATTTTTAAA
TCACTTTAGGATGAAATAATGGAATGCTTTCGTGTTTTTGATCCTGATGA
AACTGGCTTCATCCCGTCACAAGAGTTACGACGCATAATGACACAACTTG
GAGATGAACTGACCGACAGTGAGATTAATAAAGTCATTCAACAGTCAGAT
ATAGATGGAGATGGGTCAATCAACTATGCTGAATATGTCAAAAAAATTTA
TCTTTCCAACCATCGATACGAGGCAGTCAATAAAAGAGATTGGGAAAATA
TTTTGGCCAAAATGAGAAATGTAAGCTTGGAAAATAATACTCCTGAAGCT
GAAGCTTAGAACTTTCTCCGTTGGGAAAGTTCGCAAAATGGACCCTACAC
TGGGCTGATGTAATCTGTAATCTTTTGAAATTTTATTGTCAAATATTTAT
CAATTTTTATTGTTATTCTTTTTTATAAAAACATCCAAATTTTTTGAATT
ATTCGGATGTTCTTAACTGTTTTCTTTTTAAGCCTAGAAATGTTCTTAAC
ATGTTAAAAAAGCGTGTATTCTTACCCCGAATCTACCTGAGCTGGGGGTA
AAGTTAATCTGTTGAACGTTCATAGAGTCTTTTTGTTTGGTTTTCTCTTA
TTTAAGTCTGTTGTGTTTCCGGCATAAAATCGTGAAATTCAATTCCGGCA
TAGCTATCATGAAAAGTATTGGAAAGACTGTCAGCTGCGATTACATCCCA
AGAAATTAACATCCAAAGGTCTAAGACATCGTATTTAATTCCGATCCTTC
TCACCGGCGACGAAAAAAAGTTACACTAAAAAGGACCCAAGTAAAAAAAG
GATTTGAATGCTCAATTTATCCCAATTTTAAA Coding sequence (CDS) from alignment at scaffold_56:117245..121126- >TCONS_00070497 ID=TCONS_00070497|Name=TCONS_00070497|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_56:117245..121126- (Clytia hemisphaerica) GATGAAATAATGGAATGCTTTCGTGTTTTTGATCCTGATGAAACTGGCTT CATCCCGTCACAAGAGTTACGACGCATAATGACACAACTTGGAGATGAAC TGACCGACAGTGAGATTAATAAAGTCATTCAACAGTCAGATATAGATGGA GATGGGTCAATCAACTATGCTGAATATGTCAAAAAAATTTATCTTTCCAA CCATCGATACGAGGCAGTCAATAAAAGAGATTGGGAAAATATTTTGGCCA AAATGAGAAATGTAAGCTTGGAAAATAATACTCCTGAAGCTGAAGCTTAG ATTTTCGAGCAGATGGGTTTTCCGATGTCAGACGATCATTGTGAGAATTT GATCGAAACTGCTGACCAAGATGGCGATGGAGCTTTGGATTTGAAAGAAT TTGTCAACTTCGTTTTGTATGGAGTGCTCAATGTGGAAGATACTGAGTGT TGATCAAGCGGCCCGCCAAAGTGGTGAGCGAGCGCAATCAGATGACGGAG AGCGGAATACGAGATATTTTTCAACTCTACGGTGAAGGGAGAGGAAATTC AGTCCAAGCTTCTCAACTGAGAGTGATGGAATTTCTTTCGGACGGATTTT TTACGCGACGACACAAAGTTGAAAATGTCGAGTATTATTTGAAAGAGAGT GTAAAGAAAATGGCGGAACGAGATGGATGAAATAATGGAATGCTTTCGTG TTTTTGATCCTGATGAAACTGGCTTCATCCCGTCACAAGAGTTACGACGC ATAATGACACAACTTGGAGATGAACTGACCGACAGTGAGATTAATAAAGT CATTCAACAGTCAGATATAGATGGAGATGGGTCAATCAACTATGCTGAAT ATGTCAAAAAAATTTATCTTTCCAACCATCGATACGAGGCAGTCAATAAA AGAGATTGGGAAAATATTTTGGCCAAAATGAGAAATGTAAGCTTGGAAAA TAATACTCCTGAAGCTGAAGCTTAGATTTTCGAGCAGATGGGTTTTCCGA TGTCAGACGATCATTGTGAGAATTTGATCGAAACTGCTGACCAAGATGGC GATGGAGCTTTGGATTTGAAAGAATTTGTCAACTTCGTTTTGTATGGAGT GCTCAATGTGGAAGATACTGAGTGTTGATCAAGCGGCCCGCCAAAGTGGT GAGCGAGCGCAATCAGATGACGGAGAGCGGAATACGAGATATTTTTCAAC TCTACGGTGAAGGGAGAGGAAATTCAGTCCAAGCTTCTCAACTGAGAGTG ATGGAATTTCTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAA TGTCGAGTATTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATG GATGAAATAATGGAATGCTTTCGTGTTTTTGATCCTGATGAAACTGGCTT CATCCCGTCACAAGAGTTACGACGCATAATGACACAACTTGGAGATGAAC TGACCGACAGTGAGATTAATAAAGTCATTCAACAGTCAGATATAGATGGA GATGGGTCAATCAACTATGCTGAATATGTCAAAAAAATTTATCTTTCCAA CCATCGATACGAGGCAGTCAATAAAAGAGATTGGGAAAATATTTTGGCCA AAATGAGAAATGTAAGCTTGGAAAATAATACTCCTGAAGCTGAAGCTTAG ATTTTCGAGCAGATGGGTTTTCCGATGTCAGACGATCATTGTGAGAATTT GATCGAAACTGCTGACCAAGATGGCGATGGAGCTTTGGATTTGAAAGAAT TTGTCAACTTCGTTTTGTATGGAGTGCTCAATGTGGAAGATACTGAGTGT TGATCAAGCGGCCCGCCAAAGTGGTGAGCGAGCGCAATCAGATGACGGAG AGCGGAATACGAGATATTTTTCAACTCTACGGTGAAGGGAGAGGAAATTC AGTCCAAGCTTCTCAACTGAGAGTGATGGAATTTCTTTCGGACGGATTTT TTACGCGACGACACAAAGTTGAAAATGTCGAGTATTATTTGAAAGAGAGT GTAAAGAAAATGGCGGAACGAGATGGATGAAATAATGGAATGCTTTCGTG TTTTTGATCCTGATGAAACTGGCTTCATCCCGTCACAAGAGTTACGACGC ATAATGACACAACTTGGAGATGAACTGACCGACAGTGAGATTAATAAAGT CATTCAACAGTCAGATATAGATGGAGATGGGTCAATCAACTATGCTGAAT ATGTCAAAAAAATTTATCTTTCCAACCATCGATACGAGGCAGTCAATAAA AGAGATTGGGAAAATATTTTGGCCAAAATGAGAAATGTAAGCTTGGAAAA TAATACTCCTGAAGCTGAAGCTTAGATTTTCGAGCAGATGGGTTTTCCGA TGTCAGACGATCATTGTGAGAATTTGATCGAAACTGCTGACCAAGATGGC GATGGAGCTTTGGATTTGAAAGAATTTGTCAACTTCGTTTTGTATGGAGT GCTCAATGTGGAAGATACTGAGTGTTGATCAAGCGGCCCGCCAAAGTGGT GAGCGAGCGCAATCAGATGACGGAGAGCGGAATACGAGATATTTTTCAAC TCTACGGTGAAGGGAGAGGAAATTCAGTCCAAGCTTCTCAACTGAGAGTG ATGGAATTTCTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAA TGTCGAGTATTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070497-exon-scaffold_56-1575043694:120886..121126 | TCONS_00070497-exon-scaffold_56-1575043694:120886..121126 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1575043694:119783..119910 | TCONS_00070497-exon-scaffold_56-1575043694:119783..119910 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1575043694:118840..118986 | TCONS_00070497-exon-scaffold_56-1575043694:118840..118986 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1575043694:117245..118067 | TCONS_00070497-exon-scaffold_56-1575043694:117245..118067 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1510915933:120886..121126 | TCONS_00070497-exon-scaffold_56-1510915933:120886..121126 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1510915933:119783..119910 | TCONS_00070497-exon-scaffold_56-1510915933:119783..119910 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1510915933:118840..118986 | TCONS_00070497-exon-scaffold_56-1510915933:118840..118986 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1510915933:117245..118067 | TCONS_00070497-exon-scaffold_56-1510915933:117245..118067 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1491911889:120886..121126 | TCONS_00070497-exon-scaffold_56-1491911889:120886..121126 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1491911889:119783..119910 | TCONS_00070497-exon-scaffold_56-1491911889:119783..119910 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1491911889:118840..118986 | TCONS_00070497-exon-scaffold_56-1491911889:118840..118986 | Clytia hemisphaerica | exon |
TCONS_00070497-exon-scaffold_56-1491911889:117245..118067 | TCONS_00070497-exon-scaffold_56-1491911889:117245..118067 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_56 | supercontig | scaffold_56:117245..121126 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005509 | calcium ion binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005509 |
calcium ion binding |
Blast
BLAST of TCONS_00070497 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.039e-25 Identity = 51/145 (35.17%), Postives = 91/145 (62.76%), Query Frame = 1
Query: 280 NQMTESGI---RDIFQLYGEGRGNSVQASQLRVIFEQMGFPMSDDHCENLIETADQDGDGALDLKEFVNFVLYGVLNVEDTEDEIMECFRVFDPDETGFIPSQELRRIMTQLGDELTDSEINKVIQQSDIDGDGSINYAEYVKKI 705
+Q+TE I ++ F L+ + ++ +L + +G ++ +++I D DG+G +D EF+ + + + D+E+EI E FRVFD D G+I + ELR +MT LG++LTD E++++I+++DIDGDG +NY E+V+ +
Sbjct: 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT-DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146
The following BLAST results are available for this feature:
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