TCONS_00070497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070497
Unique NameTCONS_00070497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1339

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070497 ID=TCONS_00070497|Name=TCONS_00070497|organism=Clytia hemisphaerica|type=transcript|length=1339bp
ttttttccgaatattttttcaaattgtctGATTCATGATTTAAAggattc
atttttttcagaaatagtttgattatatttttgacattatttatatcatt
ttgacataatttttgtcattttttcattctttttgatTGCTATGGAATTT
CTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAATGTCGAGTA
TTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATGTGTTGATCA
AGCGGCCCGCCAAAGTGGTGAGCGAGCGCAATCAGATGACGGAGAGCGGA
ATACGAGATATTTTTCAACTCTACGGTGAAGGGAGAGGAAATTCAGTCCA
AGCTTCTCAACTGAGAGTGATTTTCGAGCAGATGGGTTTTCCGATGTCAG
ACGATCATTGTGAGAATTTGATCGAAACTGCTGACCAAGATGGCGATGGA
GCTTTggatttgaaagaatttgtCAACTTCGTTTTGTATGGAGTGCTCAA
TGTGGAAGATACTGAGGATGAAATAATGGAATGCTTTCGTGTTTTTGATC
CTGATGAAACTGGCTTCATCCCGTCACAAGAGTTACGACGCATAATGACA
CAACTTGGAGATGAACTGACCGACAGTGAGATTAATAAAGTCATTCAACA
GTCAGATATAGATGGAGATGGGTCAATCAACTATGCTGaatatgtcaaaa
aaatttatctttccAACCATCGATACGAGGCAGTCAATAAAAGAgattgg
gaaaatattttggccaaaatgAGAAATGTAAGCTTGGAAAATAATACTCC
TGAAGCTGAAGCTTAGAACTTTCTCCGTTGGGAAAGTTCGCAAAATGGAC
CCTACACTGGGCTGATGTAATCtgtaatcttttgaaattttattgtcaaa
tatttatcaatttttattgttattcttttttataaaaacatccaaatttt
ttgaattattcggatgttcttaactgttttctttttaagcctagaaatgt
tcttaacatgttaaaaaagcgtgtattcttaCCCCGAATCTACCTGAGCT
GGGGGTAAAGTTAATCTGTTGAACGTTCATAGAgtctttttgtttggttt
tctcTTATTTAAGTCTGTTGTGTTTCCGGCATAAAATCGTGAAATTCAAT
TCCGGCATAGCTATCATGAAAAGTATTGGAAAGACTGTCAGCTGCGATTA
CATCCCAAGAAATTAACATCCAAAGGTCTAAGACATCGTATTTAATTCCG
ATCCTTCTCACCGGCGACGAAAAAAAGTTACACTAAAAAGGACCCAAgta
aaaaaaggatttgaaTGCTCAATTTATCCCAATTTTAAA
Run BLAST on NCBI

protein sequence of TCONS_00070497-protein

>TCONS_00070497-protein ID=TCONS_00070497-protein|Name=TCONS_00070497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MEFLSDGFFTRRHKVENVEYYLKESVKKMAERDVLIKRPAKVVSERNQMT
ESGIRDIFQLYGEGRGNSVQASQLRVIFEQMGFPMSDDHCENLIETADQD
GDGALDLKEFVNFVLYGVLNVEDTEDEIMECFRVFDPDETGFIPSQELRR
IMTQLGDELTDSEINKVIQQSDIDGDGSINYAEYVKKIYLSNHRYEAVNK
RDWENILAKMRNVSLENNTPEAEA
Run BLAST on NCBI

transcript from alignment at scaffold_56:117245..121126-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070497 ID=TCONS_00070497|Name=TCONS_00070497|organism=Clytia hemisphaerica|type=transcript|length=3882bp|location=Sequence derived from alignment at scaffold_56:117245..121126- (Clytia hemisphaerica)
TTTTTTCCGAATATTTTTTCAAATTGTCTGATTCATGATTTAAAGGATTC ATTTTTTTCAGAAATAGTTTGATTATATTTTTGACATTATTTATATCATT TTGACATAATTTTTGTCATTTTTTCATTCTTTTTGATTGCTATGGAATTT CTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAATGTCGAGTA TTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATGGTAAGATAA GAATTTAATTTTTGATTTTTGATTTTTTTCATTTCGAATTTTATTTTTAA AGAAAAATCGGGTTATATCTTTTTCTGAAGGACTTTAAGTATTAAAACTT AAATATTTGCATGGGTCACAGGCAAGAAACAACAAAACTTTATTTATTGA TAAATTTTCTCTCTACTCTACGGTAGAGTATCTTCTGATCTAGACGCTCT ACCATAGAGTAGAGATCCAAATATTTAAGTTTTAATAATGGAAAAGCAAT CACTTTCACTGAAGAGTTTCATAACATTATGCTTTCTCATTCCAATATAA GGTAGGTACTTGATCAAATCCAATCGCTCTCTGCTCTACAAAATCAATTT TTACGAACAAAAGATTATTTCATTCATCTCTAGTAACAGGTTCAACTGCA TTGGGCAAATCAATTTTATATACATACAGGGGGTGGTAGAATATTTCCAG GGGGTCTAAAAGATTGATTTTAGTTCGCCCACCGTCACTTTAAGGTGTGA AAAGAAATTTTCCACGGGGTTATTTGAAAGAGTTATTTTATCCACACATT TAAAAGAAATATTTTTTGACGTAAAAAGGTTCGTTCACCCCCCCCCCCCT GTATGGAAATTTAATGGAATAGCTCATTCTCCACGTTAGAGATAGTTACA GTCGACGCTCTTTCTTTGATTCGACGTTTTACTATTCGGCATACTTCATT ATTCGATAATATTGAAAGTCACCGTCAACAAGAAACTCCCATAAACGATA CTCTAACATTTCTCGGTGAAAATCCGATTTTTCTTGTAAATCGAATCAGA GAGCGTCAACTTTATTAACTCTTCTTTGCTGGCATTTGGAAACCACTCTC TACGAAACTATTCTAAATACGCCGACACGGTTTCCTCGTGGTAGTAAAAA AAGTGTGCATTTGAAGCGAATGGAATGGTTGCTGTTAAACGCATTTCCGT ACTTTTTATTTTCCAGTGTTGATCAAGCGGCCCGCCAAAGTGGTGAGCGA GCGCAATCAGATGACGGAGAGCGGAATACGAGATATTTTTCAACTCTACG GTGAAGGGAGAGGAAATTCAGTCCAAGCTTCTCAACTGAGAGTGGTAAGC TTAAGTGTTTTGTATTTACACGTTTATTTTTTTTTTCATTGAAGATTGGA ATCAAGTCATGAAAACCTGGAGTATAAAATATCATCATCTATATGCTAAA TAAGTTGAATTTCAAAAAAGCCAGTGTTCTTTCACCAAATTTTGGCTTAG ATATAATTATTTGAGATACTAACAGTATAACTTTCCTTTGACAGTCGATG GCCTTTAGGTCTTTGGAGGAGGGGGGTTAGGTTTTTCTGCTTGTGCAAGG TGCTTTAAAAGTTCATCAAAGAGAGCTATTAAAAGAATCATACCTAATTA CTCTGAGAGGCCCCCCAGCGGTAGTGATCACGATATCACACACTTTTGTG TCTTTAATCAGGATTACGCAAATCAGGACAAAGAATGGACAATCATGCAT TCCTTTGAAAAAGTCCAAATCACGTATAACGGCTCAAAAATCTTTCAAAA AGTTTTAATCTCTCATCACGTAATCACGAAGAAAAAAATTTCCAAATCAC GTAATCACGAAAACCGCTTGGGGGCATCCTCAGAGCTATTAAAAAAACTG TTTGTATCAGACTACCTATCTATATTTTTGTACTAAAAGATCTTACAATC CAAACTACAGTTGGTGCTCTCTAATTCGACGTTCTACTATTCGTTAGGCT CCTTTTTCGATGAGATTTAAAGTTCCTGTCAGCAAGAAACTCTCATAAAG GACGCCCCCTTATTCGATGAAAATCCAATTCCCCTTGAAGATCGAATTAG AAAGCGTCGACTGTATACAAAAAATTCTCACTCTACTTAGATTTTCGAGC AGATGGGTTTTCCGATGTCAGACGATCATTGTGAGAATTTGATCGAAACT GCTGACCAAGATGGCGATGGAGCTTTGGATTTGAAAGAATTTGTCAACTT CGTTTTGTATGGAGTGCTCAATGTGGAAGATACTGAGGTAAAAGTTTTAC TCACCTATCAACCACAGTTATCTATATAAAACATTAGATATAGCTAATCT GTCTTTCCCAAGCCCCGGTTGTAATGATAATAATATGCCATCTTTCCGAA ATGTTGACACGAATAAATAGCAGTTCAGTGCCGGTAATTGTTTCAATCAA AACAAACCTCAAGAGAATGGTCTTGATCGACTCTCCTCACACTAAGGGTA GATAGTTTTTTTTCTAAACTCCTTTCATTATAACAGCACTTTCTTGTTGT TATATTTGGCATTTCTAAACTTTTCTTTGATCTATTTTTGGGACTTGGTA CTATTTCTCCAAATGTTTTATTCTGACACACTGTAGCACAGAGTTAGGGA TTTCCGGTATCTAAAAATCTTGATAAATGCTCACCAAAGTATCACCAACC TAGATTTAACAATCAAGTGAGAATTAATTGCCCTCCCAAACCAGTCATGG TCCTTTTCAAGTTAATTCTCAGAAATGAGTCTGAATTTAATTGTTGTACA CGTTTTTTTAAAGAACATTCTTTTTGAGTTTTAAGCCTAAAAATGTTCTT AACATGTTCTTATTTTCCCCATTTTTTATGTATTTTTGTCCATTTTCCTA AGAAATTGGCTGTCCTCAAAGCCTTAAAGTGTTCTTAACTTGTTCTTAAC ATTTTGACCATCGAAGCCTTATGTTCTTATATGATTTGTTCTTATGAAAG AAAGAAACACGTGTGCTCGTTGAAAAGATATTTGAAGCTTTATTTTTAAA TCACTTTAGGATGAAATAATGGAATGCTTTCGTGTTTTTGATCCTGATGA AACTGGCTTCATCCCGTCACAAGAGTTACGACGCATAATGACACAACTTG GAGATGAACTGACCGACAGTGAGATTAATAAAGTCATTCAACAGTCAGAT ATAGATGGAGATGGGTCAATCAACTATGCTGAATATGTCAAAAAAATTTA TCTTTCCAACCATCGATACGAGGCAGTCAATAAAAGAGATTGGGAAAATA TTTTGGCCAAAATGAGAAATGTAAGCTTGGAAAATAATACTCCTGAAGCT GAAGCTTAGAACTTTCTCCGTTGGGAAAGTTCGCAAAATGGACCCTACAC TGGGCTGATGTAATCTGTAATCTTTTGAAATTTTATTGTCAAATATTTAT CAATTTTTATTGTTATTCTTTTTTATAAAAACATCCAAATTTTTTGAATT ATTCGGATGTTCTTAACTGTTTTCTTTTTAAGCCTAGAAATGTTCTTAAC ATGTTAAAAAAGCGTGTATTCTTACCCCGAATCTACCTGAGCTGGGGGTA AAGTTAATCTGTTGAACGTTCATAGAGTCTTTTTGTTTGGTTTTCTCTTA TTTAAGTCTGTTGTGTTTCCGGCATAAAATCGTGAAATTCAATTCCGGCA TAGCTATCATGAAAAGTATTGGAAAGACTGTCAGCTGCGATTACATCCCA AGAAATTAACATCCAAAGGTCTAAGACATCGTATTTAATTCCGATCCTTC TCACCGGCGACGAAAAAAAGTTACACTAAAAAGGACCCAAGTAAAAAAAG GATTTGAATGCTCAATTTATCCCAATTTTAAA

Coding sequence (CDS) from alignment at scaffold_56:117245..121126-

>TCONS_00070497 ID=TCONS_00070497|Name=TCONS_00070497|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_56:117245..121126- (Clytia hemisphaerica)
GATGAAATAATGGAATGCTTTCGTGTTTTTGATCCTGATGAAACTGGCTT
CATCCCGTCACAAGAGTTACGACGCATAATGACACAACTTGGAGATGAAC
TGACCGACAGTGAGATTAATAAAGTCATTCAACAGTCAGATATAGATGGA
GATGGGTCAATCAACTATGCTGAATATGTCAAAAAAATTTATCTTTCCAA
CCATCGATACGAGGCAGTCAATAAAAGAGATTGGGAAAATATTTTGGCCA
AAATGAGAAATGTAAGCTTGGAAAATAATACTCCTGAAGCTGAAGCTTAG
ATTTTCGAGCAGATGGGTTTTCCGATGTCAGACGATCATTGTGAGAATTT
GATCGAAACTGCTGACCAAGATGGCGATGGAGCTTTGGATTTGAAAGAAT
TTGTCAACTTCGTTTTGTATGGAGTGCTCAATGTGGAAGATACTGAGTGT
TGATCAAGCGGCCCGCCAAAGTGGTGAGCGAGCGCAATCAGATGACGGAG
AGCGGAATACGAGATATTTTTCAACTCTACGGTGAAGGGAGAGGAAATTC
AGTCCAAGCTTCTCAACTGAGAGTGATGGAATTTCTTTCGGACGGATTTT
TTACGCGACGACACAAAGTTGAAAATGTCGAGTATTATTTGAAAGAGAGT
GTAAAGAAAATGGCGGAACGAGATGGATGAAATAATGGAATGCTTTCGTG
TTTTTGATCCTGATGAAACTGGCTTCATCCCGTCACAAGAGTTACGACGC
ATAATGACACAACTTGGAGATGAACTGACCGACAGTGAGATTAATAAAGT
CATTCAACAGTCAGATATAGATGGAGATGGGTCAATCAACTATGCTGAAT
ATGTCAAAAAAATTTATCTTTCCAACCATCGATACGAGGCAGTCAATAAA
AGAGATTGGGAAAATATTTTGGCCAAAATGAGAAATGTAAGCTTGGAAAA
TAATACTCCTGAAGCTGAAGCTTAGATTTTCGAGCAGATGGGTTTTCCGA
TGTCAGACGATCATTGTGAGAATTTGATCGAAACTGCTGACCAAGATGGC
GATGGAGCTTTGGATTTGAAAGAATTTGTCAACTTCGTTTTGTATGGAGT
GCTCAATGTGGAAGATACTGAGTGTTGATCAAGCGGCCCGCCAAAGTGGT
GAGCGAGCGCAATCAGATGACGGAGAGCGGAATACGAGATATTTTTCAAC
TCTACGGTGAAGGGAGAGGAAATTCAGTCCAAGCTTCTCAACTGAGAGTG
ATGGAATTTCTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAA
TGTCGAGTATTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATG
GATGAAATAATGGAATGCTTTCGTGTTTTTGATCCTGATGAAACTGGCTT
CATCCCGTCACAAGAGTTACGACGCATAATGACACAACTTGGAGATGAAC
TGACCGACAGTGAGATTAATAAAGTCATTCAACAGTCAGATATAGATGGA
GATGGGTCAATCAACTATGCTGAATATGTCAAAAAAATTTATCTTTCCAA
CCATCGATACGAGGCAGTCAATAAAAGAGATTGGGAAAATATTTTGGCCA
AAATGAGAAATGTAAGCTTGGAAAATAATACTCCTGAAGCTGAAGCTTAG
ATTTTCGAGCAGATGGGTTTTCCGATGTCAGACGATCATTGTGAGAATTT
GATCGAAACTGCTGACCAAGATGGCGATGGAGCTTTGGATTTGAAAGAAT
TTGTCAACTTCGTTTTGTATGGAGTGCTCAATGTGGAAGATACTGAGTGT
TGATCAAGCGGCCCGCCAAAGTGGTGAGCGAGCGCAATCAGATGACGGAG
AGCGGAATACGAGATATTTTTCAACTCTACGGTGAAGGGAGAGGAAATTC
AGTCCAAGCTTCTCAACTGAGAGTGATGGAATTTCTTTCGGACGGATTTT
TTACGCGACGACACAAAGTTGAAAATGTCGAGTATTATTTGAAAGAGAGT
GTAAAGAAAATGGCGGAACGAGATGGATGAAATAATGGAATGCTTTCGTG
TTTTTGATCCTGATGAAACTGGCTTCATCCCGTCACAAGAGTTACGACGC
ATAATGACACAACTTGGAGATGAACTGACCGACAGTGAGATTAATAAAGT
CATTCAACAGTCAGATATAGATGGAGATGGGTCAATCAACTATGCTGAAT
ATGTCAAAAAAATTTATCTTTCCAACCATCGATACGAGGCAGTCAATAAA
AGAGATTGGGAAAATATTTTGGCCAAAATGAGAAATGTAAGCTTGGAAAA
TAATACTCCTGAAGCTGAAGCTTAGATTTTCGAGCAGATGGGTTTTCCGA
TGTCAGACGATCATTGTGAGAATTTGATCGAAACTGCTGACCAAGATGGC
GATGGAGCTTTGGATTTGAAAGAATTTGTCAACTTCGTTTTGTATGGAGT
GCTCAATGTGGAAGATACTGAGTGTTGATCAAGCGGCCCGCCAAAGTGGT
GAGCGAGCGCAATCAGATGACGGAGAGCGGAATACGAGATATTTTTCAAC
TCTACGGTGAAGGGAGAGGAAATTCAGTCCAAGCTTCTCAACTGAGAGTG
ATGGAATTTCTTTCGGACGGATTTTTTACGCGACGACACAAAGTTGAAAA
TGTCGAGTATTATTTGAAAGAGAGTGTAAAGAAAATGGCGGAACGAGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043888XLOC_043888Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070497-exon-scaffold_56-1575043694:120886..121126TCONS_00070497-exon-scaffold_56-1575043694:120886..121126Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1575043694:119783..119910TCONS_00070497-exon-scaffold_56-1575043694:119783..119910Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1575043694:118840..118986TCONS_00070497-exon-scaffold_56-1575043694:118840..118986Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1575043694:117245..118067TCONS_00070497-exon-scaffold_56-1575043694:117245..118067Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1510915933:120886..121126TCONS_00070497-exon-scaffold_56-1510915933:120886..121126Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1510915933:119783..119910TCONS_00070497-exon-scaffold_56-1510915933:119783..119910Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1510915933:118840..118986TCONS_00070497-exon-scaffold_56-1510915933:118840..118986Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1510915933:117245..118067TCONS_00070497-exon-scaffold_56-1510915933:117245..118067Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1491911889:120886..121126TCONS_00070497-exon-scaffold_56-1491911889:120886..121126Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1491911889:119783..119910TCONS_00070497-exon-scaffold_56-1491911889:119783..119910Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1491911889:118840..118986TCONS_00070497-exon-scaffold_56-1491911889:118840..118986Clytia hemisphaericaexon
TCONS_00070497-exon-scaffold_56-1491911889:117245..118067TCONS_00070497-exon-scaffold_56-1491911889:117245..118067Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070497-proteinTCONS_00070497-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:117245..121126 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.87577 7.16421 5.04788 4.06909 3.81056 2.34201 1.61459 2.15398 8.59853 2.03182 7.72949 9.74393 0.250568 0.130109 0.142623 0.0956599 12.2559 15.026 0.700873 0.454017 49.6922 45.8407 20.267 37.8987 34.1807 45.8183 4.56335 2.5729 2.85748 3.26636
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
Blast
BLAST of TCONS_00070497 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.039e-25
Identity = 51/145 (35.17%), Postives = 91/145 (62.76%), Query Frame = 1
Query:  280 NQMTESGI---RDIFQLYGEGRGNSVQASQLRVIFEQMGFPMSDDHCENLIETADQDGDGALDLKEFVNFVLYGVLNVEDTEDEIMECFRVFDPDETGFIPSQELRRIMTQLGDELTDSEINKVIQQSDIDGDGSINYAEYVKKI 705
            +Q+TE  I   ++ F L+ +    ++   +L  +   +G   ++   +++I   D DG+G +D  EF+  +   + +  D+E+EI E FRVFD D  G+I + ELR +MT LG++LTD E++++I+++DIDGDG +NY E+V+ +
Sbjct:    3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDT-DSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 146          
The following BLAST results are available for this feature:
BLAST of TCONS_00070497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CALM31.039e-2535.17Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1[more]
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