|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070473 ID=TCONS_00070473|Name=TCONS_00070473|organism=Clytia hemisphaerica|type=transcript|length=3224bpRun BLAST on NCBI transcript from alignment at scaffold_56:703771..720073+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070473 ID=TCONS_00070473|Name=TCONS_00070473|organism=Clytia hemisphaerica|type=transcript|length=16303bp|location=Sequence derived from alignment at scaffold_56:703771..720073+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070473 vs. Swiss-Prot (Human)
Match: PPA6 (Lysophosphatidic acid phosphatase type 6 OS=Homo sapiens GN=ACP6 PE=1 SV=2) HSP 1 Score: 126.716 bits (317), Expect = 1.707e-30 Identity = 107/373 (28.69%), Postives = 178/373 (47.72%), Query Frame = 2
Query: 1910 DATTYTLEQVQFVSRHGARTTITNIPDVHDFPHMEPADWSG--FEV--KTSLPHILKLDNGKELLQSAYDKTMESRGLQGGMKVGELTRIGRKQALQLGNMLKKRYQEKNSFLSDVFKSNDISIRSSNIERTILTALFIVEGLFGKENIQGE-PLEIEVKERDNETMYPNWWACEALKEWKSTINYL-NFTPDIASFTKECNALIGCE-SDPIHMVALVDIIKCRKSHGFCLPKELHGYEEKIGEKAAETFKTILEGENRLAGLKRSIGCLLNELCENMEKVVKGCSE----FKLKLFSGHDTTXXXXXXXXNQWFGGSVPSFASHIIFEVYKNQSNGKHYINIIYNG-EELNFEQQERYLPLAEFLERIKLY 2992
D + L+ VQ V RHGAR+ + +P E +W+ EV +T + + G S YD L+GGM G+LT++G +Q LG L+K Y E FLS F ++ IRS+NI R + + ++ GLF Q E P+ I E D+E +YPN+ +C +L++ + P I+ K+ +G + SD + L+D + ++H L + I ++A +T IL E+R L+ ++G L+ L N+ K V + KL L++ HD T + LL+ L F P FA + E+Y++ + + ++ + Y+G E++ + PL FL + +Y
Sbjct: 44 DRSLLKLKMVQVVFRHGARSPLKPLP------LEEQVEWNPQLLEVPPQTQFDYTVTNLAGGPKPYSPYDSQYHETTLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFRNLESTRCLLAGLF---QCQKEGPIIIHTDEADSEVLYPNYQSCWSLRQRTRGRRQTASLQPGISEDLKKVKDRMGIDSSDKVDFFILLDNVAAEQAHNLPSCPMLKRFARMIEQRAVDTSLYILPKEDR-ESLQMAVGPFLHILESNLLKAVDSATAPDKIRKLYLYAAHDVTFIPLLMTLG-IFDHKWPPFAVDLTMELYQHLESKEWFVQLYYHGKEQVPRGCPDGLCPLDMFLNAMSVY 405 HSP 2 Score: 113.235 bits (282), Expect = 3.333e-26 Identity = 100/342 (29.24%), Postives = 169/342 (49.42%), Query Frame = 2
Query: 293 LQLHQVQVIFRHGARTPVYSHKIENTSFTDAIWDKEKLSKTLDHSNIPFSLRLNSGKICKEISLDNVYQDRPKXXXXXXXXXXXXXXXXXAYDLGQLFNKEYIQKFQLLSDHYLHSEVRVQSTNVRRTILTARSVVAGMYGKSNIKETLIINTMPFEEEYLLPNWSHCLRLKDRFEFLQKYMKYLPSQDEVLYFNRLIENTDQENMIQFVPLHDIMVCREAHGFEVPKELKKVEKHLVRRASENQARILGGKDIDALRMSCGNLL----NEFCEVMEQAVKDNHPYKMNLYSAHDTTLNALLMAFGKWDRYSWPRFASYIAFELYKHKEDDKHYVRVVYNKK 1306
L+L VQV+FRHGAR+P+ +E W+ + L + + +++ +G D+ Y + L GGM GQLT VG QQ + LG+ K Y++ LS + EV ++STN+ R + + R ++AG++ + + +II+T + E L PN+ C L+ R ++ P E L + D + + F L D + +AH LK+ + + +RA + IL +D ++L+M+ G L + + ++ A + K+ LY+AHD T LLM G +D + WP FA + ELY+H E + +V++ Y+ K
Sbjct: 48 LKLKMVQVVFRHGARSPLKPLPLEE----QVEWNPQLL-EVPPQTQFDYTVTNLAGGPKPYSPYDSQYHET-TLKGGMFAGQLTKVGMQQMFALGERLRKNYVEDIPFLSPTFNPQEVFIRSTNIFRNLESTRCLLAGLF-QCQKEGPIIIHTDEADSEVLYPNYQSCWSLRQRTRGRRQTASLQPGISEDLKKVKDRMGIDSSDKVDFFILLDNVAAEQAHNLPSCPMLKRFARMIEQRAVDTSLYILPKEDRESLQMAVGPFLHILESNLLKAVDSATAPDKIRKLYLYAAHDVTFIPLLMTLGIFD-HKWPPFAVDLTMELYQHLESKEWFVQLYYHGK 381 The following BLAST results are available for this feature:
BLAST of TCONS_00070473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.