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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070459 ID=TCONS_00070459|Name=TCONS_00070459|organism=Clytia hemisphaerica|type=transcript|length=974bp
ACAACACGCTTACGGATATGTGGACCTTCATTGCGATCTGGCGCAACGGA
GCCGTTCTGTTTCCGATTTTTCCGACCAGCCGCACTAAACCAACCACTGA
CGCTCAAAATACGACGACGACCTTCTTTAGTAGGAACCAACTTTATAATA
GATGTCAGTGGTTCGCAAAGGTTTGTTACGAAATTCAATGACGCAACTTT
GAAATCTTCGAATGACGTTAACGTGTACGCATCCGACCCATGGATGGAAC
CAGCAAATGCTGATTTGAACGCATACCAATTGAATACAGgTATTCAGAAA
GGTCATGTGATCGAAGAACTTTCCAGTATCGGACCAGCCTGGAAACTCCA
TCTTAAAATCACAATAACCAACACAGATCACACAGGCTATGTAAACCTTC
TTCACGCGTTCACACGCGGCGATCGAAACCAATGGGTTTGTGCTGTTTTC
CTTGCTCCAAAATCGACCAGACCTTACATTTGCGTACCCAATGGCAACGG
CCCTTCGATTTGTGCGTTCGGCCCGCTGATAACACTTAACAAACCTACGG
TAATCGAGATTGATCATTATTATCAGTTCCCAGGCTACTTTTACCAATTC
AGTGTTGGAGGAGAAGAAGTTCTTGTCGACAGAACAACCAAACGTGCACA
GCCGATTAGGAATACAACACCCagaagatttggaaatattgaTGTTTATG
CATCAAGCCCGTATTACAGTCAACCGGCTGATAATGTTGAAATTAATGCT
TATAGGTTGGCTTAATAAAAACATTATATAATAGCGGatatgaaaaaatt
gatttcagCTGACCGAATGAGGGTctccttttttgtttcaaagcaAAGCT
AAACTATTTTAATTACTAGGTCTAGAACTTTCTGTCAAAGAACAATACTT
TTTAAGGTAAATTCATGTATTTGTCAAGGAACCGTTCTtgtttttctgaa
ggaaaatTCTTGTATTTATCACGG Run BLAST on NCBI protein sequence of TCONS_00070459-protein >TCONS_00070459-protein ID=TCONS_00070459-protein|Name=TCONS_00070459-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
TTRLRICGPSLRSGATEPFCFRFFRPAALNQPLTLKIRRRPSLVGTNFII
DVSGSQRFVTKFNDATLKSSNDVNVYASDPWMEPANADLNAYQLNTGIQK
GHVIEELSSIGPAWKLHLKITITNTDHTGYVNLLHAFTRGDRNQWVCAVF
LAPKSTRPYICVPNGNGPSICAFGPLITLNKPTVIEIDHYYQFPGYFYQF
SVGGEEVLVDRTTKRAQPIRNTTPRRFGNIDVYASSPYYSQPADNVEINA
YRLA Run BLAST on NCBI transcript from alignment at scaffold_56:488254..490628+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070459 ID=TCONS_00070459|Name=TCONS_00070459|organism=Clytia hemisphaerica|type=transcript|length=2375bp|location=Sequence derived from alignment at scaffold_56:488254..490628+ (Clytia hemisphaerica)
ACAACACGCTTACGGATATGTGGACCTTCATTGCGATCTGGCGCAACGGA
GCCGTTCTGTTTCCGATTTTTCCGACCAGCCGCACTAAACCAACCACTGA
CGCTCAAAATACGACGACGACCTTCTTTAGTAGGAACCAACTTTATAATA
GATGTCAGTGGTTCGCAAAGGTTTGTTACGAAATTCAATGACGCAACTTT
GAAATCTTCGAATGACGTTAACGTGTACGCATCCGACCCATGGATGGAAC
CAGCAAATGCTGATTTGAACGCATACCAATTGAATACAGGTAAGAAGCCA
GTTGATGTATTTGcatatttataaaaaagacgtcTTTTATCTCGGGTCTG
GTCCATTTTTGGGCTTAAGGCCATCCTCGAGCAGCTATTTTCAGCTAAAT
TTGACAACATATGTTTTCAGGTGACCTTTTTACGACGAATTGTAGAAGGA
AACGTGCTTTTTACATGGATATAAATGTATCAAATGTagatatgaaattt
aaaaacatcttcaatttaatatttttctcaatttaggTATTCAGAAAGGT
CATGTGATCGAAGAACTTTCCAGTATCGGACCAGCCTGGAAACTCCATCT
TAAAATCACAATAACCAACACAGATCACACAGGCTATGTAAACCTTCTTC
ACGCGTTCACACGCGGCGATCGAAACCAATGGGTTTGTGCTGTTTTCCTT
GCTCCAAAATCGACCAGACCTTACATTTGCGTACCCAATGGCAACGGCCC
TTCGATTTGTGCGTTCGGCCCGCTGATAACACTTAACAAACCTACGGTAA
TCGAGATTGATCATTATTATCAGTTCCCAGGCTACTTTTACCAATTCAGT
GTTGGAGGAGAAGAAGTTCTTGTCGACAGAACAACCAAACGTGCACAGCC
GATTAGGAATACAACACCCagaagatttggaaatattgaTGTTTATGCAT
CAAGCCCGTATTACAGTCAACCGGCTGATAATGTTGAAATTAATGCTTAT
AGGTTGGCTTAATAAAAACATTATATAATAGCGGatatgaaaaaattgat
ttcagCTGACCGAATGAGGGTctccttttttgtttcaaagcaAAGCTAAA
CTATTTTAATTACTAGGTCTAGAACTTTCTGTCAAAGAACAATACTTTTT
AAGGTAAATTCATGTATTTGTCAAGGAACGTTCTtgtttttctgaaggaa
aatTCTTGTATTTATCACGGAACGTTTTTGTATATCTCAAAGAAGAATAC
TTTTTAAGGTAAATTCATGTATTTGTCAAGGAGCGTTCTtgtttttctga
aggaaaatTCTTCTATTTATCACGGAACGTTTTTGTATATCTCAAAGAAG
AATACTTTTTAAGGTAAATTCATGTATTTGTCAAGGAGCGTTCTtgtttt
tctgaaggaaaatTCTTCTATTTATCACGGAACGTTTTTGTATATCTCAA
AGAAGAATACTTTTTAAGGTAAATTCATGTATTTGTCAAGGAGCGTTCTt
gtttttctgaaggaaaatTCTTCTATTTATCACGGAACGTTTTTGTATAT
CTCAAAGAAGAATACTTTTTAAGGTAAATTCATGTATTTGTCAAGGAGCG
TTCTtgtttttctgaaggaaaatTCTTCTATTTATCACGGAACGTTTTTG
TATATCTCAAAGAAGAATACTTTTTAAGGTAAATTCATGTATTTGTCAAG
GAGCGTTCTtgtttttctgaaggaaaatTCTTCTATTTATCACGGAACGT
TTTTGTATATCTCAAAGAAGAATACTTTTTAAGGTAAATTCATGTATTTG
TCAAGGAGCGTTCTtgtttttctgaaggaaaatTCTTCTATTTATCACGG
AACGTTTTTGTATATCTCAAAGAAGAATACTTTTTAAGGTAAATTCATGT
ATTTGTCAAGGAGCGTTCTtgtttttctgaaggaaaatTCTTCTATTTAT
CACGGAACGTTTTTGTATATCTCAAAGAAGAATACTTTTTAAGGTAAATT
CATGTATTTGTCAAGGAGCGTTCTtgtttttctgaaggaaaatTCTTCTA
TTTATCACGGAACGTTTTTGTATATCTCAAAGAAGAATACTTTTTAAGGT
AAATTCATGTATTTGTCAAGGAGCGTTCTtgtttttctgaaggaaaatTC
TTCTATTTATCACGGAACGTTTTTGTATATCTCAAAGAAGAATACTTTTT
AAGGTAAATTCATGTATTTGTCAAGGAGCGTTCTtgtttttctgaaggaa
aatTCTTGTATTTATCACGGAGCGTTTTTGTATTTCTCAAAGAACAATAC
TTTTTAAGGTAAAGTCATGTATTTGTCAAGAAGCGTTCTtgtttttctga
aggaaaatTCTTGTATTTATCACGG Coding sequence (CDS) from alignment at scaffold_56:488254..490628+ >TCONS_00070459 ID=TCONS_00070459|Name=TCONS_00070459|organism=Clytia hemisphaerica|type=CDS|length=1530bp|location=Sequence derived from alignment at scaffold_56:488254..490628+ (Clytia hemisphaerica)
ACAACACGCTTACGGATATGTGGACCTTCATTGCGATCTGGCGCAACGGA
GCCGTTCTGTTTCCGATTTTTCCGACCAGCCGCACTAAACCAACCACTGA
CGCTCAAAATACGACGACGACCTTCTTTAGTAGGAACCAACTTTATAATA
GATGTCAGTGGTTCGCAAAGGTTTGTTACGAAATTCAATGACGCAACTTT
GAAATCTTCGAATGACGTTAACGTGTACGCATCCGACCCATGGATGGAAC
CAGCAAATGCTGATTTGAACGCATACCAATTGAATACAGgTATTCAGAAA
GGTCATGTGATCGAAGAACTTTCCAGTATCGGACCAGCCTGGAAACTCCA
TCTTAAAATCACAATAACCAACACAGATCACACAGGCTATGTAAACCTTC
TTCACGCGTTCACACGCGGCGATCGAAACCAATGGGTTTGTGCTGTTTTC
CTTGCTCCAAAATCGACCAGACCTTACATTTGCGTACCCAATGGCAACGG
CCCTTCGATTTGTGCGTTCGGCCCGCTGATAACACTTAACAAACCTACGG
TAATCGAGATTGATCATTATTATCAGTTCCCAGGCTACTTTTACCAATTC
AGTGTTGGAGGAGAAGAAGTTCTTGTCGACAGAACAACCAAACGTGCACA
GCCGATTAGGAATACAACACCCagaagatttggaaatattgaTGTTTATG
CATCAAGCCCGTATTACAGTCAACCGGCTGATAATGTTGAAATTAATGCT
TATAGGTTGGCTTAAACAACACGCTTACGGATATGTGGACCTTCATTGCG
ATCTGGCGCAACGGAGCCGTTCTGTTTCCGATTTTTCCGACCAGCCGCAC
TAAACCAACCACTGACGCTCAAAATACGACGACGACCTTCTTTAGTAGGA
ACCAACTTTATAATAGATGTCAGTGGTTCGCAAAGGTTTGTTACGAAATT
CAATGACGCAACTTTGAAATCTTCGAATGACGTTAACGTGTACGCATCCG
ACCCATGGATGGAACCAGCAAATGCTGATTTGAACGCATACCAATTGAAT
ACAGgTATTCAGAAAGGTCATGTGATCGAAGAACTTTCCAGTATCGGACC
AGCCTGGAAACTCCATCTTAAAATCACAATAACCAACACAGATCACACAG
GCTATGTAAACCTTCTTCACGCGTTCACACGCGGCGATCGAAACCAATGG
GTTTGTGCTGTTTTCCTTGCTCCAAAATCGACCAGACCTTACATTTGCGT
ACCCAATGGCAACGGCCCTTCGATTTGTGCGTTCGGCCCGCTGATAACAC
TTAACAAACCTACGGTAATCGAGATTGATCATTATTATCAGTTCCCAGGC
TACTTTTACCAATTCAGTGTTGGAGGAGAAGAAGTTCTTGTCGACAGAAC
AACCAAACGTGCACAGCCGATTAGGAATACAACACCCagaagatttggaa
atattgaTGTTTATGCATCAAGCCCGTATTACAGTCAACCGGCTGATAAT
GTTGAAATTAATGCTTATAGGTTGGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070459-exon-scaffold_56-1491911889:488254..488542 | TCONS_00070459-exon-scaffold_56-1491911889:488254..488542 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1510915933:488254..488542 | TCONS_00070459-exon-scaffold_56-1510915933:488254..488542 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1575043694:488254..488542 | TCONS_00070459-exon-scaffold_56-1575043694:488254..488542 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1491911889:488790..489432 | TCONS_00070459-exon-scaffold_56-1491911889:488790..489432 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1510915933:488790..489432 | TCONS_00070459-exon-scaffold_56-1510915933:488790..489432 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1575043694:488790..489432 | TCONS_00070459-exon-scaffold_56-1575043694:488790..489432 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1491911889:490587..490628 | TCONS_00070459-exon-scaffold_56-1491911889:490587..490628 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1510915933:490587..490628 | TCONS_00070459-exon-scaffold_56-1510915933:490587..490628 | Clytia hemisphaerica | exon |
| TCONS_00070459-exon-scaffold_56-1575043694:490587..490628 | TCONS_00070459-exon-scaffold_56-1575043694:490587..490628 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_56 | supercontig | scaffold_56:488254..490628 + |
Blast
The following BLAST results are available for this feature:
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