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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070446 ID=TCONS_00070446|Name=TCONS_00070446|organism=Clytia hemisphaerica|type=transcript|length=2668bpRun BLAST on NCBI transcript from alignment at scaffold_56:345827..358144+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070446 ID=TCONS_00070446|Name=TCONS_00070446|organism=Clytia hemisphaerica|type=transcript|length=12318bp|location=Sequence derived from alignment at scaffold_56:345827..358144+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00070446 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 1.709e-36 Identity = 122/368 (33.15%), Postives = 163/368 (44.29%), Query Frame = 1
Query: 907 TKWSEWSLCSRSCNGGQLTRTREC----MSKDIDVCKSFALIDQKPCNPQRCKVDGRWSDWSNYTECSVSCGNGNQFRNRTCFPP--QHGGLECTGVDVEVKNCLTAKVCPVVLMKAMNCTKACETIGENLVCGSEFFKGFTPMEMAAKTGLYCTNFTDFDEERPHPSYDRLTQICKGFKNIGSYDCSMEPKENEERICGCVGKDEVTMGPWSQWGECSTTCGPGVQKRSR---NQVSTVDISETE-SFTHTKPCNDRNCPMDGNWGQWSGFGRCSVSCGKGEKVRMRECNDPTPMFDGRDCSGQNTDSMPCGFPEICPVNGGWSDWIPYSNCSQPCQQKNSTEKIYRSFIRRCDSPLPEFGGEPCEG 1980
++WS W CS +C G R+R C + C+ L + + C + C VDG WS+WS + EC+ SCG GNQ R RTC P QHGG C G VE+ C + CPV A + + T E+ G++ A G YC D E + Q+C ER C GK W+ W CS +CG G ++R+R + V + E S + CN CP GNW WSG+G CS +C G+ R R C++P P GR C G ++ C ++CPV+G W W +S CS C T K R CD P+P GG PC G
Sbjct: 4533 SQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDL-EMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMC-NIRPCPV--HGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYC----DGAETQ--------MQVCN------------------ERNCPIHGK----WATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNT-DMCPVDGSWGSWHSWSQCSASCGGGEKTRK------RLCDHPVPVKGGRPCPG 4855 HSP 2 Score: 115.161 bits (287), Expect = 9.579e-26 Identity = 61/158 (38.61%), Postives = 86/158 (54.43%), Query Frame = 1
Query: 1522 WSQWGECSTTCGPGVQKRSR--NQVSTVDISE--TESFTHTKPCNDRNCPMDGNWGQWSGFGRCSVSCGKGEKVRMRECNDPTPMFDGRDCSGQNTDSMPCGFPEICPVNGGWSDWIPYSNCSQPCQQKNSTEKIYRSFIRRCDSPLPEFGGEPCEGS 1983
WS W CS TCG G+QKRSR NQ + + S + C ++ CP+DG+W +WS + C+ SCG+G + R R CN+P+ GR C G + + C CPV+G WS W P+ CS+ C + T R C++P P FGG C+G+
Sbjct: 4535 WSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNI-RPCPVHGAWSAWQPWGTCSESCGKGTQTRA------RLCNNPPPAFGGSYCDGA 4685 HSP 3 Score: 103.219 bits (256), Expect = 4.371e-22 Identity = 61/158 (38.61%), Postives = 76/158 (48.10%), Query Frame = 1
Query: 1522 WSQWGECSTTCGPGVQKRSR--NQVSTVDISET--ESFTHTKPCNDRNCPMDGNWGQWSGFGRCSVSCGKGEKVRMRECNDPTPMFDGRDCSGQNTDSMPCGFPEICPVNGGWSDWIPYSNCSQPCQQKNSTEKIYRSFIRRCDSPLPEFGGEPCEGS 1983
WS W EC+ +CG G Q R+R N S + CN R CP+ G W W +G CS SCGKG + R R CN+P P F G C G T C CP++G W+ W +S CS C R R C P+P++GG CEGS
Sbjct: 4592 WSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCN-ERNCPIHGKWATWASWSACSVSCGGG------ARQRTRGCSDPVPQYGGRKCEGS 4742 HSP 4 Score: 88.5817 bits (218), Expect = 1.242e-17 Identity = 62/175 (35.43%), Postives = 84/175 (48.00%), Query Frame = 1
Query: 715 KWDVWKPYGACSVTCGKGIKKLKRDCLDTNGEKVDIKHCDGLDPQLKENSTEACDLGFSCGDPVTKWSEWSLCSRSCNGGQLTRTREC----MSKDIDVCKSFALIDQKPCNPQRCKVDGRWSDWSNYTECSVSCGNGNQFRNRTC-FP-PQHGGLECTGVDVEVKNCLTAKVCP 1221
KW W + ACSV+CG G ++ R C D + + C+G D Q +++ C + + WS W CSR+CNGGQ+ R R C S C Q+ CN C VDG W W ++++CS SCG G + R R C P P GG C G +V C + CP
Sbjct: 4702 KWATWASWSACSVSCGGGARQRTRGCSDPV-PQYGGRKCEGSDVQSDFCNSDPCPTHGNW----SPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQR-CNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRC-NVQACP 4869 The following BLAST results are available for this feature:
BLAST of TCONS_00070446 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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