TCONS_00070433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070433
Unique NameTCONS_00070433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3433

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070433 ID=TCONS_00070433|Name=TCONS_00070433|organism=Clytia hemisphaerica|type=transcript|length=3433bp
CCTGTTTGATGGACTATTGCACCACATCTTCCATACTCCGTTTCCAAGAT
CATCTCTTGCTGGTTAAGCACTGAAAATTGGCAACTCGTGTCGCTTAAGG
TGATATTCTTAGTATGCTGTCTCAAACTGTTCTCATCATTTTGTGTTCTT
AATATTATTCTCATCATTCCATTATCGCAGCTTAATGTTTTGAGTTCTAA
GCGTTCGTTTTTAATGGCGGTTTCTTCAGTACTGCTTACTGTGTTTTGGG
CTTTagtgaaattttcagatttagGCTGTATTGTTGGTAGGTTTGGAGGT
GTGaagtatttttcttctttttcgccTCGTGTGATATTTTTGAATAGAGG
TGTCTCAGGTCTTTCAGACTTGGGCCCGCCGGTTGTTGCTAGGTTGAAGA
TTGTCAATACATTGCCTTCCGTTGTAGCTTTAGTAACGTTCAGAAAGACT
TTGGTACTTGACTTCTGAGTTTTTGTGGCAACTGTGGTGTTGGGATTCAA
TGTAATGGTTTTATTGTCGAACACGAGGGAATGGTTGGTAGGGGAATATA
TGGATTGTACGGGTGTGACACTCACTGTTGAATTAATTTTATCATTTGGA
TGAATATCATTGTCAGATGAGGTTTTATTAACATTGATGATCACTGTAGG
TCTTGGAGTAATTGGTCCTTTAGTATCTCTCGCTGCATTCGAGCTTTCCG
AGTCATTGTTTTTAAGAATAATGTTGAAATTATTTCTAGCCTCTGACGTC
GGTTTAAAAGTGTCATTCTGCATCTTATTCATACTCGAGGTGAAGTTTCC
GGCGTATTTAGAGGTTGACAAAGTCTCAGTGGTGCGCAACCCGACAGATG
TATCACTTGTGGAGGCTGGTAATGAAGTATTTTCAACGTTCACCACTGGA
CTTGATAATGGCGACGTAGTGCGTTCTGATAGTGGTTCTTGGGTAGCTGA
AACCTTTTGTGAGCTGGTTGTTTCAGTTGCAGGTCTCGTCTCAGTTGTTT
CGTATTCAGGCTCAGTGATGTAGAAGCTTTTTGAGGATGGTTTGGATGTT
GTAGTAATCGGATCTGGTGATTCTAATGTTGCATTGTTGAGCAAGTCAGT
TTCATTACTTAATCCAACAGACGGTGTCGAAGTTGGACGCTTGGTCGTTG
ACTCCTCTTGGCGTTTTGTCTCGAATGTTGCAGGTTCCAACGTGGAAGTT
GTAGGCTTTTCAGTGTCTTTTTGTTCGAATTCATCCGATGGTGTAGTGAC
TATGTTAGTTGGTTTGGTTGAGGTGTTTAATGTTACCAATGTTGAGTTTT
TCGTGTCTATGTCTTGAGATTGCGTTGTTGTACTGACTTCATCTGAGGTA
ATTAGAATTTGAGTTGGATTGTTTCGAGTATTAGAAGTTGACAATGGTTC
AGAAGTTGAGGTAGATTCGTTTCTTTTATTAGTTGGTAATTCGGTGGCTT
TATCAGCTTCTTCAGTCGGAACACCTTCATTGTCTTCAGTTGTTGAGTAT
TGAGGTGGCGGAGATGGTTCTGTCTCCGTGTCGTGGGTTGTGCAGTCGTC
GAGGTTTGATGCTGTGCTTGTTGTGTCTTTAGTAGATGTCGCAGGAGGTG
TTATTTCTCTTGTGATCGTTGACTTTGTTGACGTTGAAGATGTAGCCAAA
ATTGTAGTGGTCGTCGTAGAGTCTTCTATAGATGTGGAGAGGATTGAGTT
TCCTCCTACGATTGGTAATTCAGTTGTAGATGACAAGGTGGCAGTAGATT
TGTCTTCCGGAGATATTATTTCCGACGGCTTAGTTGGTAAAACGGTCGTT
GATTCTGTGGTAGAAGACAGAGCAGATTTCGCGATATCAGTAGTTGTCGT
AGGATCTGTTATAGGTGTGGGGGATTCTTCTTCGGTTATTGACGATATTG
TTGTATCAACTACTCCTTTCGGAGATGTGGTATTTGGAGATTCAGTTACC
ATTGCTGTCCGCGTAGTCAATGCAGAATCGCCATTGGATTCAACTTCTAT
CGCTGTTGTTTTAGTAGATGTGATTGTAGTTGATTTCTGTGTAGTTGATT
CATATTTCTTACTCGTGGATGAGATCGTATCAGTTGGAAGTTCCGTTGGA
ATAAAAGTCGTAGTTTCTACCAAGGCTTCTGTTTTTTCATCTACAGGTGT
AGTTGTTGATTGTACAGAGAAGACATTGTTGCCAGTTTTCGAAGAGGTTG
TATAATCTTCTTTTGTCAAAACATTTGACAATAAATCTACTGTTGATATT
GTCGGTAAATTCAAAGAAGATTTCGCAGACGTTGCATCTTTTACTCGAAG
TGTGGGTGTGGTATTGTCTGTCTTAGGTGAAATAGTAGAAGAAGCTACTA
AAGCCTGCGATGAATTCtccattgttgtttttcttacgGACTTTGACGGT
GATTTATTTTTCACGAGTAATTTGGTAACTAAAGGTTTCGTCGTAACTTT
GTTAGTATTTGGTGTTGTTTCTGGTGACCCTTCTGTTGAGGTTTGTCGAG
GTATTTCTGCAGATGTCTTTCTGGTTGTTCTACCTTGTTTCGTAGATGGC
TTTGTAGATTGGCTTGGTGATCTGCTAGTCATTATTGATCGGTAAAGGTC
CGTAGAGGTTTCTACTGATACCATCGCAGTTGGAAATTTGGCATCTTGTG
TAGTTTCTCTTTTGAGAATAGCAGGTAAGTTGGTGGTCATTGTTACTATG
GTTGCTTTAGTCTTTTGAACTGTAGCAGGTGTTGGTGTCGTTTCTGTTGT
CAGTGTGTTGCCTGCTTCTCTTGAAGTAATCTTGACAACAACTGGAGATG
GTGTTGTAACTGTTGTGGATGTTGAAGGTGAAGGTGatgttgtggctgat
tgtgaggctgttgttgttgttgctgctaGAGTTTCTTTTGTCGACTTTGA
TGTTGTTGATGTCAAAGCAGATGTCGTGAATACAGGCTTTAGAGTTGAAA
TTATATTGCTTGGCATGGTAGTTTTTGTAGTAGCTATAGTGACTGTTGTC
GATGCTTTCGAAGATGTCGTTACTTCAGGTGCCATCGTATTAATCAATGC
TCGTGTCTTTTCTATCAGAGTCGTCGATGGTGAAGGCAACGCCATTGTTG
GTGTACGTGATGTTGTTGTCGGCCTGGTAGATGTTGTCAATAAAGGTGTT
GTCTTCGTTAATGTCGTTGTGGTTGTTGTCGTCGTCGCTGTTGATGTTGT
TGTTGGATTCGTTGATGTAGAGGTTGAAGTAGTAGTTGTAGTAGTCTTTG
GCGAGgtttttgttgattttactAGAGTTTTGAACGGGGTTGATGTCgtt
gttttcttcttcttctttttgtttttcttattcttatttttacGTTTCTT
GTTCTTTCGTTTGCCGCCTTTGTTCTTTCGATTCTTTTTCTTGCggtctt
tcttcttcttttttttctctttggaACCTGAGA
Run BLAST on NCBI

transcript from alignment at scaffold_56:131577..135071+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070433 ID=TCONS_00070433|Name=TCONS_00070433|organism=Clytia hemisphaerica|type=transcript|length=3495bp|location=Sequence derived from alignment at scaffold_56:131577..135071+ (Clytia hemisphaerica)
CCTGTTTGATGGACTATTGCACCACATCTTCCATACTCCGTTTCCAAGAT
CATCTCTTGCTGGTTAAGCACTGAAAATTGGCAACTCGTGTCGCTTAAGG
TGATATTCTTAGTATGCTGTCTCAAACTGTTCTCATCATTTTGTGTTCTT
AATATTATTCTCATCATTCCATTATCGCAGCTTAATGTTTTGAGTTCTAA
GCGTTCGTTTTTAATGGCGGTTTCTTCAGTACTGCTTACTGTGTTTTGGG
CTTTagtgaaattttcagatttagGCTGTATTGTTGGTAGGTTTGGAGGT
GTGaagtatttttcttctttttcgccTCGTGTGATATTTTTGAATAGAGG
TGTCTCAGGTCTTTCAGACTTGGGCCCGCCGGTTGTTGCTAGGTTGAAGA
TTGTCAATACATTGCCTTCCGTTGTAGCTTTAGTAACGTTCAGAAAGACT
TTGGTACTTGACTTCTGAGTTTTTGTGGCAACTGTGGTGTTGGGATTCAA
TGTAATGGTTTTATTGTCGAACACGAGGGAATGGTTGGTAGGGGAATATA
TGGATTGTACGGGTGTGACACTCACTGTTGAATTAATTTTATCATTTGGA
TGAATATCATTGTCAGATGAGGTTTTATTAACATTGATGATCACTGTAGG
TCTTGGAGTAATTGGTCCTTTAGTATCTCTCGCTGCATTCGAGCTTTCCG
AGTCATTGTTTTTAAGAATAATGTTGAAATTATTTCTAGCCTCTGACGTC
GGTTTAAAAGTGTCATTCTGCATCTTATTCATACTCGAGGTGAAGTTTCC
GGCGTATTTAGAGGTTGACAAAGTCTCAGTGGTGCGCAACCCGACAGATG
TATCACTTGTGGAGGCTGGTAATGAAGTATTTTCAACGTTCACCACTGGA
CTTGATAATGGCGACGTAGTGCGTTCTGATAGTGGTTCTTGGGTAGCTGA
AACCTTTTGTGAGCTGGTTGTTTCAGTTGCAGGTCTCGTCTCAGTTGTTT
CGTATTCAGGCTCAGTGATGTAGAAGCTTTTTGAGGATGGTTTGGATGTT
GTAGTAATCGGATCTGGTGATTCTAATGTTGCATTGTTGAGCAAGTCAGT
TTCATTACTTAATCCAACAGACGGTGTCGAAGTTGGACGCTTGGTCGTTG
ACTCCTCTTGGCGTTTTGTCTCGAATGTTGCAGGTTCCAACGTGGAAGTT
GTAGGCTTTTCAGTGTCTTTTTGTTCGAATTCATCCGATGGTGTAGTGAC
TATGTTAGTTGGTTTGGTTGAGGTGTTTAATGTTACCAATGTTGAGTTTT
TCGTGTCTATGTCTTGAGATTGCGTTGTTGTACTGACTTCATCTGAGGTA
ATTAGAATTTGAGTTGGATTGTTTCGAGTATTAGAAGTTGACAATGGTTC
AGAAGTTGAGGTAGATTCGTTTCTTTTATTAGTTGGTAATTCGGTGGCTT
TATCAGCTTCTTCAGTCGGAACACCTTCATTGTCTTCAGTTGTTGAGTAT
TGAGGTGGCGGAGATGGTTCTGTCTCCGTGTCGTGGGTTGTGCAGTCGTC
GAGGTTTGATGCTGTGCTTGTTGTGTCTTTAGTAGATGTCGCAGGAGGTG
TTATTTCTCTTGTGATCGTTGACTTTGTTGACGTTGAAGATGTAGCCAAA
ATTGTAGTGGTCGTCGTAGAGTCTTCTATAGATGTGGAGAGGATTGAGTT
TCCTCCTACGATTGGTAATTCAGTTGTAGATGACAAGGTGGCAGTAGATT
TGTCTTCCGGAGATATTATTTCCGACGGCTTAGTTGGTAAAACGGTCGTT
GATTCTGTGGTAGAAGACAGAGCAGATTTCGCGATATCAGTAGTTGTCGT
AGGATCTGTTATAGGTGTGGGGGATTCTTCTTCGGTTATTGACGATATTG
TTGTATCAACTACTCCTTTCGGAGATGTGGTATTTGGAGATTCAGTTACC
ATTGCTGTCCGCGTAGTCAATGCAGAATCGCCATTGGATTCAACTTCTAT
CGCTGTTGTTTTAGTAGATGTGATTGTAGTTGATTTCTGTGTAGTTGATT
CATATTTCTTACTCGTGGATGAGATCGTATCAGTTGGAAGTTCCGTTGGA
ATAAAAGTCGTAGTTTCTACCAAGGCTTCTGTTTTTTCATCTACAGGTGT
AGTTGTTGATTGTACAGAGAAGACATTGTTGCCAGTTTTCGAAGAGGTTG
TATAATCTTCTTTTGTCAAAACATTTGACAATAAATCTACTGTTGATATT
GTCGGTAAATTCAAAGAAGATTTCGCAGACGTTGCATCTTTTACTCGAAG
TGTGGGTGTGGTATTGTCTGTCTTAGGTGAAATAGTAGAAGAAGCTACTA
AAGCCTGCGATGAATTCtccattgttgtttttcttacgGACTTTGACGGT
GATTTATTTTTCACGAGTAATTTGGTAACTAAAGGTTTCGTCGTAACTTT
GTTAGTATTTGGTGTTGTTTCTGGTGACCCTTCTGTTGAGGTTTGTCGAG
GTATTTCTGCAGATGTCTTTCTGGTTGTTCTACCTTGTTTCGTAGATGGC
TTTGTAGATTGGCTTGGTGATCTGCTAGTCATTATTGATCGGTAAAGGTC
CGTAGAGGTTTCTACTGATACCATCGCAGTTGGAAATTTGGCATCTTGTG
TAGTTTCTCTTTTGAGAATAGCAGGTAAGTTGGTGGTCATTGTTACTATG
GTTGCTTTAGTCTTTTGAACTGTAGCAGGTGTTGGTGTCGTTTCTGTTGT
CAGTGTGTTGCCTGCTTCTCTTGAAGTAATCTTGACAACAACTGGAGATG
GTGTTGTAACTGTTGTGGATGTTGAAGGTGAAGGTGatgttgtggctgat
tgtgaggctgttgttgttgttgctgctaGAGTTTCTTTTGTCGACTTTGA
TGTTGTTGATGTCAAAGCAGATGTCGTGAATACAGGCTTTAGAGTTGAAA
TTATATTGCTTGGCATGGTAGTTTTTGTAGTAGCTATAGTGACTGTTGTC
GATGCTTTCGAAGATGTCGTTACTTCAGGTGCCATCGTATTAATCAATGC
TCGTGTCTTTTCTATCAGAGTCGTCGATGGTGAAGGCAACGCCATTGTTG
GTGTACGTGATGTTGTTGTCGGCCTGGTAGATGTTGTCAATAAAGGTGTT
GTCTTCGTTAATGTCGTTGTGGTTGTTGTCGTCGTCGCTGTTGATGTTGT
TGTTGGATTCGTTGATGTAGAGGTTGAAGTAGTAGTTGTAGTAGTCTTTG
GCGAGGTTATTGTCNGTCGTGACGGTTGTTGCCGTAGGTTGAAGTAGTTG
CAGTTATCTTTGGCGaggtttttgttgattttactAGAGTTTTGAACGGG
GTTGATGTCgttgttttcttcttcttctttttgtttttcttattcttatt
tttacGTTTCTTGTTCTTTCGTTTGCCGCCTTTGTTCTTTCGATTCTTTT
TCTTGCggtctttcttcttcttttttttctctttggaACCTGAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043865XLOC_043865Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070433-exon-scaffold_56-1491911889:131577..134831TCONS_00070433-exon-scaffold_56-1491911889:131577..134831Clytia hemisphaericaexon
TCONS_00070433-exon-scaffold_56-1510915933:131577..134831TCONS_00070433-exon-scaffold_56-1510915933:131577..134831Clytia hemisphaericaexon
TCONS_00070433-exon-scaffold_56-1575043694:131577..134831TCONS_00070433-exon-scaffold_56-1575043694:131577..134831Clytia hemisphaericaexon
TCONS_00070433-exon-scaffold_56-1491911889:134894..135071TCONS_00070433-exon-scaffold_56-1491911889:134894..135071Clytia hemisphaericaexon
TCONS_00070433-exon-scaffold_56-1510915933:134894..135071TCONS_00070433-exon-scaffold_56-1510915933:134894..135071Clytia hemisphaericaexon
TCONS_00070433-exon-scaffold_56-1575043694:134894..135071TCONS_00070433-exon-scaffold_56-1575043694:134894..135071Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_56supercontigscaffold_56:131577..135071 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.630192	0.0200318	0.0963265	0.644457	0	0.159346	0	0.48375	0	0	0	0	0	0	6.59325	5.75094	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001507ZP_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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