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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070411 ID=TCONS_00070411|Name=TCONS_00070411|organism=Clytia hemisphaerica|type=transcript|length=1962bp
gtcaaagtcaattttccagtgggactgaaattcaagggtattttcccacc
agggATGAAATGTTTGCTTAAtttatgacacaggggtgtttaaatcttaa
atagaaagtttttatttttttgattttgcctaaaatgcttggtcaatagt
taaatttcctaaaatttggtgatttttagtactcatgtactaaaattttt
cttaaatttcttgaagaccccacctaatttgggattttagtacacatggt
actaaaatgcttCAAGGCCTTTTTTgtaataccaccacgtcactaaaagt
catgatgtctgaaattttagtaccgaccccccccctgaaatAATTTGCTA
AATTAGCAATAAATCATAAAATCGAAAACAATAAGAGTCACGATAGTTTT
CAGTAAACAAAGAAATCTTATTTACACCTATTTTTACAGCTAAAATATAA
ACAGAATATGCAAAGGTCAACATAAAATACCCAGTTCGAAGGGATCGTTT
GATAACGTTTGTCTATAAATCAAAAGATgctgataatttttttctttaca
gaaTTGAGTTTGAAAACTCAAATCGAAATTGAGTTGGAAATTACCCTGTA
TTGGTACCATTCTTTAAGTTAGTGGTACAATACCATTGAAGATAAACGAG
CAATTCGACCATGTAGAATCTTATGCATGTAGTTCAGTTTTGCTTCAAGC
CGTCTTTGCTGAAGGGTTTTTTCAGGTTAAGATTACCAATCATGGTGGTT
GGACTACTGGAATATCTCCAATCATTACATATGAATCTGGACGCCTTGCG
TTGGACCATTTCTAATTGGTTGATGTTGGCTTTAGTATGAGGATCCCATA
CAACTGATGCGTATTCAAGAATCTGCCTCACATAGGTATGATAGGCTTGG
AGCTTGATTACTTGGTTACATGTACGCAAGTTGCGCTGAAGGAAGCATCT
GACTTAGTTGGCTTTTTTCAAAGTGTAGCTGACATGGGTATTCCAAGATA
CCTTTATGTGTATAAATACACCAAAAACACCAAGGTATTTTGCTGAGTGA
ACAAGCTCAAGGATTTGGTTGTTCATGGAATAGTCAGATAGAATTATTTT
GCTTTTATTGGTGACTCTGTGGACCTTGCATTTGTCTAGATTGAATTCCA
TCGACCAATGCCTTTCCCATTCAACCAGTTCATTCAGGTCATGTTGAAGT
TGGTAAATGCCATTGCAAGGTAATCTCAAATCCAAGAGAGAGTATTACCT
CTTATTCCATAGTGATCAAGTTTAATACACAGTTTTTCATGGTCCATCTT
GTcaaatttggaaaagttaagcAAGATGGAATCGATTTGACTTCCCTCAT
TAAGCAATTTTGCAAAATCATAAGTGGTGAGTAAAAGCTAAGATTCACAT
GAAGGATTTTTTCGAAAGCCATGTTGTGTATCAAGGTCGGAGATGATATT
AACTGTGAAGAATATGCTCAAATATCTTGCGTGATGCTGATGTTAGGCTT
ATAGGCCTATAAAATCCAGCTTTGGCTCGGTTTGACTGTTTTCCCTAGTT
TGAAGACTGGGGCAGCCAAGGCATGACACCAGTCCTCAGGAGTCTTTGAC
TGCATCATGGAGGCCTGCATTACATCTTAGTCCAGGTGCAATTTCATTAC
CAAGCTCTTTTAGGAACTTAGAGGAGACATTGTCTGGACCAGATGCTTTG
TTTGGGTTGAAATCTTTCAGAAGTTTATTggggggggtccatgtacaaaa
tgtacaaaatactatccagcaaactcaCAAAACATCCCAACACCCcctat
attttacaatatactatccagtactatccagcaaactcccaaatacaccc
tgacaccccctgtataatacaatatactatcaAGCAAACTGCCAAATATA
CCCCAACACCCCCTTACATAGCACAATATACTATCCAGAAAACTACCAAA
TATACCTCTACA Run BLAST on NCBI transcript from alignment at scaffold_55:85623..87584 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070411 ID=TCONS_00070411|Name=TCONS_00070411|organism=Clytia hemisphaerica|type=transcript|length=1962bp|location=Sequence derived from alignment at scaffold_55:85623..87584 (Clytia hemisphaerica)
TGTAGAGGTATATTTGGTAGTTTTCTGGATAGTATATTGTGCTATGTAAG
GGGGTGTTGGGGTATATTTGGCAGTTTGCTtgatagtatattgtattata
cagggggtgtcagggtgtatttgggagtttgctggatagtactggatagt
atattgtaaaatataggGGGTGTTGGGATGTTTTGtgagtttgctggata
gtattttgtacattttgtacatggaccccccccAATAAACTTCTGAAAGA
TTTCAACCCAAACAAAGCATCTGGTCCAGACAATGTCTCCTCTAAGTTCC
TAAAAGAGCTTGGTAATGAAATTGCACCTGGACTAAGATGTAATGCAGGC
CTCCATGATGCAGTCAAAGACTCCTGAGGACTGGTGTCATGCCTTGGCTG
CCCCAGTCTTCAAACTAGGGAAAACAGTCAAACCGAGCCAAAGCTGGATT
TTATAGGCCTATAAGCCTAACATCAGCATCACGCAAGATATTTGAGCATA
TTCTTCACAGTTAATATCATCTCCGACCTTGATACACAACATGGCTTTCG
AAAAAATCCTTCATGTGAATCTTAGCTTTTACTCACCACTTATGATTTTG
CAAAATTGCTTAATGAGGGAAGTCAAATCGATTCCATCTTgcttaacttt
tccaaatttgACAAGATGGACCATGAAAAACTGTGTATTAAACTTGATCA
CTATGGAATAAGAGGTAATACTCTCTCTTGGATTTGAGATTACCTTGCAA
TGGCATTTACCAACTTCAACATGACCTGAATGAACTGGTTGAATGGGAAA
GGCATTGGTCGATGGAATTCAATCTAGACAAATGCAAGGTCCACAGAGTC
ACCAATAAAAGCAAAATAATTCTATCTGACTATTCCATGAACAACCAAAT
CCTTGAGCTTGTTCACTCAGCAAAATACCTTGGTGTTTTTGGTGTATTTA
TACACATAAAGGTATCTTGGAATACCCATGTCAGCTACACTTTGAAAAAA
GCCAACTAAGTCAGATGCTTCCTTCAGCGCAACTTGCGTACATGTAACCA
AGTAATCAAGCTCCAAGCCTATCATACCTATGTGAGGCAGATTCTTGAAT
ACGCATCAGTTGTATGGGATCCTCATACTAAAGCCAACATCAACCAATTA
GAAATGGTCCAACGCAAGGCGTCCAGATTCATATGTAATGATTGGAGATA
TTCCAGTAGTCCAACCACCATGATTGGTAATCTTAACCTGAAAAAACCCT
TCAGCAAAGACGGCTTGAAGCAAAACTGAACTACATGCATAAGATTCTAC
ATGGTCGAATTGCTCGTTTATCTTCAATGGTATTGTACCACTAACTTAAA
GAATGGTACCAATACAGGGTAATTTCCAACTCAATTTCGATTTGAGTTTT
CAAACTCAAttctgtaaagaaaaaaattatcagcATCTTTTGATTTATAG
ACAAACGTTATCAAACGATCCCTTCGAACTGGGTATTTTATGTTGACCTT
TGCATATTCTGTTTATATTTTAGCTGTAAAAATAGGTGTAAATAAGATTT
CTTTGTTTACTGAAAACTATCGTGACTCTTATTGTTTTCGATTTTATGAT
TTATTGCTAATTTAGCAAATTatttcagggggggggtcggtactaaaatt
tcagacatcatgacttttagtgacgtggtggtattacAAAAAAGGCCTTG
aagcattttagtaccatgtgtactaaaatcccaaattaggtggggtcttc
aagaaatttaagaaaaattttagtacatgagtactaaaaatcaccaaatt
ttaggaaatttaactattgaccaagcattttaggcaaaatcaaaaaaata
aaaactttctatttaagatttaaacacccctgtgtcataaaTTAAGCAAA
CATTTCATccctggtgggaaaatacccttgaatttcagtcccactggaaa
attgactttgac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070411-exon-scaffold_55-1491911889:85623..87584 | TCONS_00070411-exon-scaffold_55-1491911889:85623..87584 | Clytia hemisphaerica | exon |
| TCONS_00070411-exon-scaffold_55-1510915933:85623..87584 | TCONS_00070411-exon-scaffold_55-1510915933:85623..87584 | Clytia hemisphaerica | exon |
| TCONS_00070411-exon-scaffold_55-1575043694:85623..87584 | TCONS_00070411-exon-scaffold_55-1575043694:85623..87584 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_55 | supercontig | scaffold_55:85623..87584 . |
Blast
The following BLAST results are available for this feature:
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