TCONS_00070409 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070409
Unique NameTCONS_00070409
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length777

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070409 ID=TCONS_00070409|Name=TCONS_00070409|organism=Clytia hemisphaerica|type=transcript|length=777bp
AGACCACACTAAGGATTTATGTCATTTGAAACTGgctttggaaaaaattg
aagaacaaaacaaaatcataGAAAGCCAACAATCAAAGCTTGAAAAGTCA
CGAACAACAAATTCGTCACCTGAACTCGCAAATGAATATTCTCCTCAAAC
AAACTTCTCATGAATCCACCAAACAAACACAACAATCTACTAAACCTAAA
GAAACATCTACTACTAAGTCAAAGACTGCCGAACAAGCACCTTCAAAAGC
TTTGGGATGTGGAGAATTCTTGTGGAAGTTGGAGATTGCAAAGGTTGGCT
ACCCTCCTCGAATGTTGTCAAAAGCAATGTTTTATTCTTCGTCTACTGGT
TATCATTTCATGATTGTTTATATCAAAGAAATAGAATCtcatgtttccat
tttatttCGAATCATTGAAGGATGGAATGATGCTTCTTTGCAATGGCCTT
TGAAAGCGAAGATTAAAATTTCACTCGTCAAAGGAgaaactgataaaaac
aaagtgaCTTTTCCTTACAATGGATAGTAAACCTGATGCAGGTATCTTCA
AAAGACCGAATGTGAATCCACAATCAATGTCGTCGTCGGTAGCTGTTGAA
ATTCCATATTTTCTTCAACACAATGCTTTGAGCAGTTTCATATCGAATAA
TAAACTGACCATCAAAGTTAACCTCACTCAAATCAAGGATTCAAATTTGA
GAAATTATCAAATTAAACCTTGCACTGGTGCGAGATTCGAAAGATTAGTG
TTTTTACAAggcaaaaaatgattttat
Run BLAST on NCBI

protein sequence of TCONS_00070409-protein

>TCONS_00070409-protein ID=TCONS_00070409-protein|Name=TCONS_00070409-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNILLKQTSHESTKQTQQSTKPKETSTTKSKTAEQAPSKALGCGEFLWKL
EIAKVGYPPRMLSKAMFYSSSTGYHFMIVYIKEIESHVSILFRIIEGWND
ASLQWPLKAKIKISLVKGETDKNKVTFPYNG
Run BLAST on NCBI

transcript from alignment at scaffold_55:13315..14091

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070409 ID=TCONS_00070409|Name=TCONS_00070409|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at scaffold_55:13315..14091 (Clytia hemisphaerica)
ataaaatcattttttgccTTGTAAAAACACTAATCTTTCGAATCTCGCAC
CAGTGCAAGGTTTAATTTGATAATTTCTCAAATTTGAATCCTTGATTTGA
GTGAGGTTAACTTTGATGGTCAGTTTATTATTCGATATGAAACTGCTCAA
AGCATTGTGTTGAAGAAAATATGGAATTTCAACAGCTACCGACGACGACA
TTGATTGTGGATTCACATTCGGTCTTTTGAAGATACCTGCATCAGGTTTA
CTATCCATTGTAAGGAAAAGtcactttgtttttatcagtttcTCCTTTGA
CGAGTGAAATTTTAATCTTCGCTTTCAAAGGCCATTGCAAAGAAGCATCA
TTCCATCCTTCAATGATTCGaaataaaatggaaacatgaGATTCTATTTC
TTTGATATAAACAATCATGAAATGATAACCAGTAGACGAAGAATAAAACA
TTGCTTTTGACAACATTCGAGGAGGGTAGCCAACCTTTGCAATCTCCAAC
TTCCACAAGAATTCTCCACATCCCAAAGCTTTTGAAGGTGCTTGTTCGGC
AGTCTTTGACTTAGTAGTAGATGTTTCTTTAGGTTTAGTAGATTGTTGTG
TTTGTTTGGTGGATTCATGAGAAGTTTGTTTGAGGAGAATATTCATTTGC
GAGTTCAGGTGACGAATTTGTTGTTCGTGACTTTTCAAGCTTTGATTGTT
GGCTTTCtatgattttgttttgttcttcaattttttccaaagcCAGTTTC
AAATGACATAAATCCTTAGTGTGGTCT

Coding sequence (CDS) from alignment at scaffold_55:13315..14091

>TCONS_00070409 ID=TCONS_00070409|Name=TCONS_00070409|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_55:13315..14091 (Clytia hemisphaerica)
CTATCCATTGTAAGGAAAAGtcactttgtttttatcagtttcTCCTTTGA
CGAGTGAAATTTTAATCTTCGCTTTCAAAGGCCATTGCAAAGAAGCATCA
TTCCATCCTTCAATGATTCGaaataaaatggaaacatgaGATTCTATTTC
TTTGATATAAACAATCATGAAATGATAACCAGTAGACGAAGAATAAAACA
TTGCTTTTGACAACATTCGAGGAGGGTAGCCAACCTTTGCAATCTCCAAC
TTCCACAAGAATTCTCCACATCCCAAAGCTTTTGAAGGTGCTTGTTCGGC
AGTCTTTGACTTAGTAGTAGATGTTTCTTTAGGTTTAGTAGATTGTTGTG
TTTGTTTGGTGGATTCATGAGAAGTTTGTTTGAGGAGAATATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043848XLOC_043848Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070409-proteinTCONS_00070409-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070409-exon-scaffold_55-1491911889:13315..14091TCONS_00070409-exon-scaffold_55-1491911889:13315..14091Clytia hemisphaericaexon
TCONS_00070409-exon-scaffold_55-1510915933:13315..14091TCONS_00070409-exon-scaffold_55-1510915933:13315..14091Clytia hemisphaericaexon
TCONS_00070409-exon-scaffold_55-1575043694:13315..14091TCONS_00070409-exon-scaffold_55-1575043694:13315..14091Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:13315..14091 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.76254	1.91459	0.720444	0.523924	1.40319	1.18851	2.53966	2.50648	1.72096	1.76504	1.72325	1.91514	6.48416	5.41618	8.44626	6.37964	3.47465	5.787	9.65568	9.38149	4.97735	4.28765	5.73426	5.5993	8.45487	9.99133	0	0.674213	3.29683	3.33707
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070409 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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