TCONS_00070390 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070390
Unique NameTCONS_00070390
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2692

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070390 ID=TCONS_00070390|Name=TCONS_00070390|organism=Clytia hemisphaerica|type=transcript|length=2692bp
caagctttttgatattggattgacacggatgaagaacaagattggtcaga
aagaagaaaagaaagatattttttgcttatatcagcacaatataacaata
agaaacggaaacactttaaaataaaacctttaacttttgaattttcggAT
TTAGGAAAAAATTGCCTCGACAGAACATGGCATAGTTTTGTTTGGCAACA
GTAGAaattgatattttgtcaaataaaaaattcactatgacCGAATATTT
GACGAAATATATCAGGTGAATGTTGCAAAAATTAGTCGCcagaaaatcag
tgaaaatttcGGTTTGCAATcataaattatataaaaattccTTAAGATAG
GTAGTCCTTTTAAGTTTgagccattttctgtaagaaCCAGGcagttttgg
acaattttccacAAAGAAATTTAGCCAAAAAAAGTCCTGGGCTGAGTAAT
GGCACTTCTAAAGATGGCTGAAATAGATTTTGGAGCGTTTTTaagccgcc
attatggaatttgcgtttaaggtcacatgggtttttttggtttttttgga
AGCACTAATTGGGTACTtcaagaaaattaataaaaacccATGTGATCTTA
GTTGCAACTTGAAAAAATGCTTCTTAAAGTTGTAACAAAGAAAAcgagca
aaaaaagtgaattttttgattggctgtaaatccgccattatggatttcgg
ggacctgaaattttgtttgggattctgagtttttcactattctctaccaa
atatccaaaaatggaggaatttaaatttttctactaACACCACCTGCCTG
GTTCTTACAGAAAATGGCAAGTAGTCTCAGTGCAATTAACTGTGATCGGT
GTGATGTCTGGTTCTGGATAAAGGATCTTGTACCATATACCattatgcaa
aatttaaaaacttttcacttcaaaCAGTCATGCCCGAccaaaaaattgac
taaaattttttcaaatgcttTTCTAGAAAGCTTTCCCAGAAAGACTTGTC
TATAAAGGGAGctcaaaattgaattgaatggtGAATTTTCTATAGTAAAC
CCGAGTTTTAAGGAAAGTTGCTTGTTGTTTACTtcccattttcttttctt
tttagtgaTATAAGTAATATGCTTCCTAACAGCCAAATGCATACCCCGAG
TTAAACAATGtacacgcttttctttttataagaataacttctataagaat
atcagggtgagatttcagagttagaacaataggcctattgttcagaacaa
tagaaaaataagaataatgctcaccctcagccaaagtacactattcttat
taaaaaatgcgGGTGAAATGTTTACATTAAATTGCATGATGAAGGAGGGG
GTGGGTCTTTCCCATCAATAGTTGTTGTGCAACATTCTTCAATCAAGAAA
TACTTCTTTACTGTCAATGGTGAATTATTTCTGATATCAATCACTATTTC
ATCCATTCTTGTTTTCACTGCTTCCAGATCATTATTGTCAATATCATCAA
ATAAATTCAAATCTTCATCATGAAAGTGCGGTAAGCATGCAGTTGTAATG
CATTCATATAACTTCTCAATAGAGCGTCTGAAAACCTCCTCTATGTGTTT
CTCTAGCCATTTCTGGTCATCTTTAAGGACAGCCATAAttgttgttttta
aatgaaaatctgaCAACTTGTTCCAATTTGGTCCCTGCATATCACAGAAA
AGTTTCAAcagtttcaaaacttttctactGCAACATTCTTGAAAGTATGA
ATCCTCTTTGAAAGGATATGAAATATTCCATAAACGTCCAAACCCATCAG
AGATATTTGAATTTGGAGTAAAAGCTATATCATCATACCGGTGATCAATT
AATGGAACCAACTTTACTTTAACTTTAGTTCCACTGTCACAAAGTATTTC
TAGAATGCTGATTGAATCATCAACGTTATTTTGAAGTGTAACTGAAACAA
CTTCACTTGTTTTTGAATATTTGAACTTTTCTCCATACCACCATCTTCCA
ATTGATGaagtatttttgtaaataattttctcaattaTTTTTTGTAGCAA
ATTATTGAACCAAAGAAGGAAAGGTCCTGGTAACAATATGTATTTATATT
GACGAAATATCAATCCAGAATGATGTATACATTCAAAAAAGCTTTGTAGC
GATTTGAAATCAGAATAGCAAGGATGGTTCACTGGAAGTAACTCTTGAAA
GGTTTTAGCGGTCCAAAAAATTATAGTTCCTGGTTGAATATCAAGTCTGT
CAGATTCTTTACTGTTTGTCTTGAGAACCTCAAAGTGGCCACCAAAAAAT
GGTAGATTCAAAACGACACCAAGCTCAAATTCCGTATATTCACCAACCTT
CAAACCATCGGAAAATGAACCTGTAACGATTGTCTTTTGAAAAAGTCCTT
TGAAACATTTATCAATATCTTTCATCTCACCAATCAAAACATTCTCAATA
AAATCTTGCATGACACTCTTTGCTTTAGCGGCCACAACATCATCAGCAGA
GAACTTTTCAGCATAAATATCTTCAAGAATCTGGTTCATAGACATAGAGT
CACTCATTTTGATGATCAAATTGTGTTAAAATGTACATGTATTCAAAATT
ATGTGAATTCATAAAAGATATTTAAAGTAGAGATACGTGGAAGTCACCTG
AcaaagaaatttcttttgacACCAGCACGAAAATGTACGAAA
Run BLAST on NCBI

transcript from alignment at scaffold_55:134646..137416-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070390 ID=TCONS_00070390|Name=TCONS_00070390|organism=Clytia hemisphaerica|type=transcript|length=2771bp|location=Sequence derived from alignment at scaffold_55:134646..137416- (Clytia hemisphaerica)
CAAGCTTTTTGATATTGGATTGACACGGATGAAGAACAAGATTGGTCAGA
AAGAAGAAAAGAAAGATATTTTTTGCTTATATCAGCACAATATAACAATA
AGAAACGGAAACACTTTAAAATAAAACCTTTAACTTTTGAATTTTCGGAT
TTAGGAAAAAATTGCCTCGACAGAACATGGCATAGTTTTGTTTGGCAACA
GTAGAAATTGATATTTTGTCAAATAAAAAATTCACTATGACCGAATATTT
GACGAAATATATCAGGTGAATGTTGCAAAAATTAGTCGCCAGAAAATCAG
TGAAAATTTCGGTTTGCAATCATAAATTATATAAAAATTCCTTAAGATAG
GTAGTCCTTTTAAGTTTGAGCCATTTTCTGTAAGAACCAGGCAGTTTTGG
ACAATTTTCCACAAAGAAATTTAGCCAAAAAAAGTCCTGGGCTGAGTAAT
GGCACTTCTAAAGATGGCTGAAATAGATTTTGGAGCGTTTTTAAGCCGCC
ATTATGGAATTTGCGTTTAAGGTCACATGGGTTTTTTTGGTTTTTTTGGA
AGCACTAATTGGGTACTTCAAGAAAATTAATAAAAACCCATGTGATCTTA
GTTGCAACTTGAAAAAATGCTTCTTAAAGTTGTAACAAAGAAAACGAGCA
AAAAAAGTGAATTTTTTGATTGGCTGTAAATCCGCCATTATGGATTTCGG
GGACCTGAAATTTTGTTTGGGATTCTGAGTTTTTCACTATTCTCTACCAA
ATATCCAAAAATGGAGGAATTTAAATTTTTCTACTAACACCACCTGCCTG
GTTCTTACAGAAAATGGCAAGTAGTCTCAGTGCAATTAACTGTGATCGGT
GTGATGTCTGGTTCTGGATAAAGGATCTTGTACCATATACCATTATGCAA
AATTTAAAAACTTTTCACTTCAAACAGTCATGCCCGACCAAAAAATTGAC
TAAAATTTTTTCAAATGCTTTTCTAGAAAGCTTTCCCAGAAAGACTTGTC
TATAAAGGGAGCTCAAAATTGAATTGAATGGTGAATTTTCTATAGTAAAC
CCGAGTTTTAAGGAAAGTTGCTTGTTGTTTACTTCCCATTTTCTTTTCTT
TTTAGTGATATAAGTAATATGCTTCCTAACAGCCAAATGCATACCCCGAG
TTAAACAATGTACACGCTTTTCTTTTTATAAGAATAACTTCTATAAGAAT
ATCAGGGTGAGATTTCAGAGTTAGAACAATAGGCCTATTGTTCAGAACAA
TAGAAAAATAAGAATAATGCTCACCCTCAGCCAAAGTACACTATTCTTAT
TAAAAAATGCGGGTGAAATGTTTACATTAAATTGCATGATGAAGGAGGGG
GTGGGTCTTTCCCATCAATAGTTGTTGTGCAACATTCTTCAATCAAGAAA
TACTTCTTTACTGTCAATGGTGAATTATTTCTGATATCAATCACTATTTC
ATCCATTCTTGTTTTCACTGCTTCCAGATCATTATTGTCAATATCATCAA
ATAAATTCAAATCTTCATCATGAAAGTGCGGTAAGCATGCAGTTGTAATG
CATTCATATAACTTCTCAATAGAGCGTCTGAAAACCTCCTCTATGTGTTT
CTCTAGCCATTTCTGGTCATCTTTAAGGACAGCCATAATTGTTGTTTTTA
AATGAAAATCTGACAACTTGTTCCAATTTGGTCCCTGCATATCACAGAAA
AGTTTCAACAGTTTCAAAACTTTTCTACTGCAACATTCTTGAAAGTATGA
ATCCTCTTTGAAAGGATATGAAATATTCCATAAACGTCCAAACCCATCAG
AGATATTTGAATTTGGAGTAAAAGCTATATCATCATACCGGTGATCAATT
AATGGAACCAACTTTACTTTAACTTTAGTTCCACTGTCACAAAGTATTTC
TAGAATGCTGATTGAATCATCAACGTTATTTTGAAGTGTAACTGAAACAA
CTTCACTTGTTTTTGAATATTTGAACTTTTCTCCATACCACCATCTTCCA
ATTGATGAAGTATTTTTGTAAATAATTTTCTCAATTATTTTTTGTAGCAA
ATTATTGAACCAAAGAAGGAAAGGTCCTGGTAACAATATGTATTTATATT
GACGAAATATCAATCCAGAATGATGTATACATTCAAAAAAGCTTTGTAGC
GATTTGAAATCAGAATAGCAAGGATGGTTCACTGGAAGTAACTCTTGAAA
GGTTTTNACATTCAAAAAAGCTTTGTAGCGATTTGAAATCAGAATAGCAA
GGATGGTTCACTGGAAGTAACTCTTGAAAGGTTTTAGCGGTCCAAAAAAT
TATAGTTCCTGGTTGAATATCAAGTCTGTCAGATTCTTTACTGTTTGTCT
TGAGAACCTCAAAGTGGCCACCAAAAAATGGTAGATTCAAAACGACACCA
AGCTCAAATTCCGTATATTCACCAACCTTCAAACCATCGGAAAATGAACC
TGTAACGATTGTCTTTTGAAAAAGTCCTTTGAAACATTTATCAATATCTT
TCATCTCACCAATCAAAACATTCTCAATAAAATCTTGCATGACACTCTTT
GCTTTAGCGGCCACAACATCATCAGCAGAGAACTTTTCAGCATAAATATC
TTCAAGAATCTGGTTCATAGACATAGAGTCACTCATTTTGATGATCAAAT
TGTGTTAAAATGTACATGTATTCAAAATTATGTGAATTCATAAAAGATAT
TTAAAGTAGAGATACGTGGAAGTCACCTGACAAAGAAATTTCTTTTGACA
CCAGCACGAAAATGTACGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043841XLOC_043841Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070390-exon-scaffold_55-1575043694:135216..137416TCONS_00070390-exon-scaffold_55-1575043694:135216..137416Clytia hemisphaericaexon
TCONS_00070390-exon-scaffold_55-1575043694:134646..135136TCONS_00070390-exon-scaffold_55-1575043694:134646..135136Clytia hemisphaericaexon
TCONS_00070390-exon-scaffold_55-1510915933:135216..137416TCONS_00070390-exon-scaffold_55-1510915933:135216..137416Clytia hemisphaericaexon
TCONS_00070390-exon-scaffold_55-1510915933:134646..135136TCONS_00070390-exon-scaffold_55-1510915933:134646..135136Clytia hemisphaericaexon
TCONS_00070390-exon-scaffold_55-1491911889:135216..137416TCONS_00070390-exon-scaffold_55-1491911889:135216..137416Clytia hemisphaericaexon
TCONS_00070390-exon-scaffold_55-1491911889:134646..135136TCONS_00070390-exon-scaffold_55-1491911889:134646..135136Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_55supercontigscaffold_55:134646..137416 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.301334	0.218046	0.431344	0.374862	1.3387	1.11836	4.57175	4.46362	2.27726	1.84374	1.95614	1.57667	1.95723	2.88941	1.23863	1.22171	1.32299	1.74266	2.89454	1.52772	2.77468	3.00864	1.85749	2.13195	3.73026	6.25637	1.98505	2.11707	1.19921	0.816375
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024810Mab-21_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070390 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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