TCONS_00070381 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00070381
Unique Name	TCONS_00070381
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	408

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_55:5379..11112-

transcript sequence

>TCONS_00070381 ID=TCONS_00070381|Name=TCONS_00070381|organism=Clytia hemisphaerica|type=transcript|length=408bp
AAGTAATTAAAAATGAGAATTGTTCGATTGAAAAGTTTTGTGGACTGGCT
ATTGCAAAGAAAAATGCAAGATAGACAGAGAGTCTTCTTAAAGGGCTCTC
TATCCTTATTTTTTAGGAATAGGAAAtagtaaaattttatttcattgtgG
ATGATTGGATTTCAACCGAAGAgaagaaaaatgttttggtgACAGGCTGT
GATTCtggttttggttttcaaacagcTTTAGAATTAAGTGaatctaattg
taaagtttttgctGGTTGTTTAACTCAAGATGGTGTCAAACGACTTGAGA
GCAATGCCAGGTTTCGAGGGATGGCTTTTATCATGGACGTGACTAAAGAC
GAGGATGTTCAGAAAGCAAAGGAGGTCATTGAAGAGAATGGAGCTTTGGA
CGGTATAG

Run BLAST on NCBI

transcript from alignment at scaffold_55:5379..11112-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00070381 ID=TCONS_00070381|Name=TCONS_00070381|organism=Clytia hemisphaerica|type=transcript|length=5734bp|location=Sequence derived from alignment at scaffold_55:5379..11112- (Clytia hemisphaerica)
AAGTAATTAAAAATGAGAATTGTTCGATTGAAAAGTTTTGTGGACTGGCT
ATTGCAAAGAAAAATGCAAGATAGACAGAGAGTCTTCTTAAAGGGCTCTC
TATCCTTATTTTTTAGGAATAGGAAATAGTAAAATTTTATTTCATTGTGG
ATGATTGGATTTCAACCGAAGAGAAGAAAAATGTTTTGGTGACAGGCTGT
GATTCTGGTTTTGGTTTTCAAACAGCTTTAGAATTAAGTGAATCTAATTG
TAAAGTTTTTGCTGGTTGTTTAACTCAAGATGGTGTCAAACGACTTGAGA
GCAATGCCAGGTTTCGAGGGATGGCTTTTATCATGGACGTGACTAAAGAC
GAGGATGTTCAGAAAGCAAAGGAGGTCATTGAAGAGAATGGAGGTATAAG
ACTTTTTTTTATTTAAGTGTTTCGTCAATGGCTACTTAACATACACTTAT
AGCTATCCGTCTGACTTTATGTCTCGTGTTTTATTATGTTATCAAAGATT
TGGGTATCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNCCCCCCCCCCCCAGTTGCTACGGCACTGTAACAT
CTGAATGTCTGTTGTTCTATCACTGTTGTATTTAATGACTATTTGTTGAT
CAAGAAATAAGTAATGTAGCATCTTTAATGGTAAATTTTATTGGTTGGTC
GTTAATACTTATTTGTCAGTGCGTTTTAGACATCAAGGATATGCCCTTGA
TAATACACTTGCATTACAAAATCATTGTGCAGGAAAGATTAACAATAAGA
AATTTAAACAAGCACAAAATGGCTGGGCTGAAAGAACTCAAAAATTAATA
AAGTGCCTCGAAATGCCTTCACAATATTTCAGTGAAATCTTTTTAGAAAT
CGATGAAATAGTATTCAAATTTATCATTCAAACTGACAGGAAAGTTGTCA
TCTTAAATACAGTTATATATACTTATAATTTTAATTTTGGCGAAAAACTA
TCAAAAATACCCCTAAAAGATATCCAAAATCAGTTCAAGTGTTTTATTGG
GTATTGTTAACCGGTTACTTTTTCAAAGCGGGCTACACGGCTTTTTGCGC
AATGCAATTGGTTCTTTTTCCATGAGGACGGGCCTACACTGTCCAGAGTT
GCCCGTCGTTAGGAAATTTCATTGTGACGTCACTTTTTCAATGGAAAATT
AACAATGCGCTAACATCGAGGTCCTGGAGTCACCGGAGACACTCACCTTT
CGTTAACACCACTGCTGACGCAGAAGTCACAAATTTCATTTGTAATATTT
AATTAAAGTTTTCAATAAGTTTTCAGTTTTTTTGTTTTTTTTANNNNNNN
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TAAAACAATGAATTAACTGGTTAGTGACAGTTAGTGAAAACTCTCTTTGT
GGGGAAAATTCTGTTGCGGTTCACAGAACTGTAATTTCAAACTTTTTAAG
CTGTAATAACCGACGTTATAACCGGAACACCTTGGCCAATATGAAGAATG
TTAACTCTTAAAATTTTGATTGTATTGAATATGGAATTAAACAATTGGAA
TCATTATCTTGAACTTGGTACTTGGAGATTTTCTTCCCCATGCATTTATA
ATGTGGAAAACTTTTTGTTCGTGGAGATTTTTTCCACTTGCGTTTTAAAC
GTGGAAACTTTTGTTGTGAATTTGGAGATTTTCTTCCCCGTGCATTTAAA
ACGTGGAAAACTTTGGTTGTGAATTTGTAGATTGTTTTCCATNNNNNNNN
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NNAGGGTTTCAGTTTTCATGTTTGCCTTTTCTTTTTCCTCTTGGTCATTG
CTCACTGTTTTTCAGATTTTTCATCTTAAAATATATTTGATTTCTATTAT
ATGTATATCAAAATAAATTTGTGCTTTATCTTAAATGCGTTGACATCATT
TCTCTCATTTTTTATTTCTGACGTCAGAAATTATAACAATTTTTTATCTC
TTTTCGCTTGTTTTTTTTCGCTTTATTTCGCTATTTTTCCTTGATAAATA
AATCAATCGAAGCTGAAGGAAACGGTTAACAAATACAATAATGACCGGGT
TTTTCGGGCTGTACTGAAAATATTGACCTCGGGCAATATTTCTCAGTATA
GCCCTCACTAACCGGTCATTATTGTATTACAGATTCAAAGATATCTAGCA
ATAAAAAAGCTTTTTGTGAAGGAAAATAAAAGAAAAATTTCAAAACTATC
TACAAATAATAAACTGACAATCTTGATGTTCTTATAAAGCTCGGAGACAG
AGATAGAACAGCAATTAACTGAAAAGACAATGCGGTAGATATTCCAGCCG
CGGCTTTCTTATACTATGCTCTAAGCAATTTTTTCATGTGAAAGTTTTCA
TTTTTGTCTTGATTCGCGAAAGTCTATGCTCGCGAAATATATTTTCGTTG
AATTCGCGAAAGTAAATGTTGGAAATTTCGGAATTTTCCGACCTCGCAAA
GGTTTCTGCTCGGGAAAGTTTGCACGCCTAAAGTACCATGGATTGTAAAA
TCCACCCTACTGTAGCTAAATAAGAACAAGGTAAAGAACATTTTAAAGCT
TCGAGTAGTGCTGAAAAATGAGAACGGCCGAGCTTTAAACGATTATAATT
GTAGAACTTCAATTAGAATCCTGCCAAGATTGAGAGTTATACTGTGAATC
TTCCTTGATTTTCGTACAGCTTTGGACGGTATAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_043837	XLOC_043837	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00070381-exon-scaffold_55-1575043694:10720..11112	TCONS_00070381-exon-scaffold_55-1575043694:10720..11112	Clytia hemisphaerica	exon
TCONS_00070381-exon-scaffold_55-1575043694:5379..5393	TCONS_00070381-exon-scaffold_55-1575043694:5379..5393	Clytia hemisphaerica	exon
TCONS_00070381-exon-scaffold_55-1510915933:10720..11112	TCONS_00070381-exon-scaffold_55-1510915933:10720..11112	Clytia hemisphaerica	exon
TCONS_00070381-exon-scaffold_55-1510915933:5379..5393	TCONS_00070381-exon-scaffold_55-1510915933:5379..5393	Clytia hemisphaerica	exon
TCONS_00070381-exon-scaffold_55-1491911889:10720..11112	TCONS_00070381-exon-scaffold_55-1491911889:10720..11112	Clytia hemisphaerica	exon
TCONS_00070381-exon-scaffold_55-1491911889:5379..5393	TCONS_00070381-exon-scaffold_55-1491911889:5379..5393	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_55	supercontig	scaffold_55:5379..11112 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.794103	0.178996	0.636339	0.865166	0	0.379967	0.229207	1.93123	1.05163	1.11653	2.18904	1.83794	4.87966	4.66667	6.10164	7.65673	4.37525	4.74718	10.4463	10.9985	7.38376	8.91222	7.99278	11.6732	15.6128	16.5486	3.73088	3.66202	28.5889	17.2802

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00070381 vs. Swiss-Prot (Human)

BLAST of TCONS_00070381 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00070381 (transcript) - C. hemisphaerica