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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070374 ID=TCONS_00070374|Name=TCONS_00070374|organism=Clytia hemisphaerica|type=transcript|length=1569bpRun BLAST on NCBI protein sequence of TCONS_00070374-protein >TCONS_00070374-protein ID=TCONS_00070374-protein|Name=TCONS_00070374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp QVKRKIYDKVTGVSTFRITWTSKASANQRAGRAGRVGPGHCYRLYSSAVFRun BLAST on NCBI transcript from alignment at scaffold_55:310399..329863+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070374 ID=TCONS_00070374|Name=TCONS_00070374|organism=Clytia hemisphaerica|type=transcript|length=19465bp|location=Sequence derived from alignment at scaffold_55:310399..329863+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_55:310399..329863+ >TCONS_00070374 ID=TCONS_00070374|Name=TCONS_00070374|organism=Clytia hemisphaerica|type=CDS|length=23472bp|location=Sequence derived from alignment at scaffold_55:310399..329863+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070374 vs. Swiss-Prot (Human)
Match: DHX37 (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1) HSP 1 Score: 488.419 bits (1256), Expect = 1.109e-159 Identity = 245/491 (49.90%), Postives = 340/491 (69.25%), Query Frame = 3
Query: 3 QVKRKIYDKVTGVSTFRITWTSKASANQRAGRAGRVGPGHCYRLYSSAVFQNDFEEFAEPEICGRPVEDLVLQMKSLCIDKVLNFPFPSPPELKSLQAAEKILLRLGALQ-------MRKMTNGQELAVISKMGRKMSRIPLLPRFSKMLILASLQNTHCLQYVIAIVAALTVKEIFTDDIDVKNLADTDNEID-IKRKRMLITQARRKWCGEGSISHLGDLMVILRAVGACEYSGCSQSFCQQNGLRYKSMVEIRKLRAQITNAVTSVCGEGNLYMDPKMQPPDHKQSEVIRKIVLSCVGDHVARKIPREEAKEKKLRNAYMCCLSEDPVYIHPTSSLFTKLPEYIVFHEIIETSKCYMRCCFEIEEEWLPSYAPYMCTLGKPAEEPAP--CIKEGRVFCHRSCNFGPHVWTLPACYVDSSDWPQRFRWFGRFFLEGLVITELEKNASLFLTPPAVMVKSWSHLQPKSERLLKALIDKDMDSEEKLRKAW 1445
+VK++ YD+VTGVS+FR+TW S+ASA+QRAGRAGR PGHCYRLYSSAVF DFE+F PEI RPVEDL+LQMK+L ++KV+NFPFP+PP +++L AAE++L+ LGALQ ++++ + I+ +GR M+ P+ PR++KML L+ + CL Y I IVA++TV+E+F +++D A +D E+ +K KR + Q +R W G+G+ LGDLMV+L AVGACEY+ C+ FC+ NGLRYK+M+EIR+LR Q+T AV +VC E L++DPKMQPP Q +R+IV + +GDH+AR++ EE E K RNAY L +DPV+IHP+S LF +LPE++V+ EI+ET+K YM+ +E +W+P+ P C KP EEPAP C + GRV CHR+ F W LPA VD + R++ F RF LEG V +L S L+ P M+K+W+ LQP++E LL+AL+ + D E L AW
Sbjct: 640 KVKKRYYDRVTGVSSFRVTWVSQASADQRAGRAGRTEPGHCYRLYSSAVF-GDFEQFPPPEITRRPVEDLILQMKALNVEKVINFPFPTPPSVEALLAAEELLIALGALQPPQKAERVKQLQENRLSCPITALGRTMATFPVAPRYAKMLALS--RQHGCLPYAITIVASMTVRELF-EELD--RPAASDEELTRLKSKRARVAQMKRTWAGQGASLKLGDLMVLLGAVGACEYASCTPQFCEANGLRYKAMMEIRRLRGQLTTAVNAVCPEAELFVDPKMQPPTESQVTYLRQIVTAGLGDHLARRVQSEEMLEDKWRNAYKTPLLDDPVFIHPSSVLFKELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSYCQFDKPLEEPAPTYCPERGRVLCHRASVFYRVGWPLPAIEVDFPEGIDRYKHFARFLLEGQVFRKLASYRSCLLSSPGTMLKTWARLQPRTESLLRALVAEKADCHEALLAAW 1124 The following BLAST results are available for this feature:
BLAST of TCONS_00070374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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