TCONS_00070374-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070374-protein
Unique NameTCONS_00070374-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length488

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070374-protein ID=TCONS_00070374-protein|Name=TCONS_00070374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=488bp
QVKRKIYDKVTGVSTFRITWTSKASANQRAGRAGRVGPGHCYRLYSSAVF
QNDFEEFAEPEICGRPVEDLVLQMKSLCIDKVLNFPFPSPPELKSLQAAE
KILLRLGALQMRKMTNGQELAVISKMGRKMSRIPLLPRFSKMLILASLQN
THCLQYVIAIVAALTVKEIFTDDIDVKNLADTDNEIDIKRKRMLITQARR
KWCGEGSISHLGDLMVILRAVGACEYSGCSQSFCQQNGLRYKSMVEIRKL
RAQITNAVTSVCGEGNLYMDPKMQPPDHKQSEVIRKIVLSCVGDHVARKI
PREEAKEKKLRNAYMCCLSEDPVYIHPTSSLFTKLPEYIVFHEIIETSKC
YMRCCFEIEEEWLPSYAPYMCTLGKPAEEPAPCIKEGRVFCHRSCNFGPH
VWTLPACYVDSSDWPQRFRWFGRFFLEGLVITELEKNASLFLTPPAVMVK
SWSHLQPKSERLLKALIDKDMDSEEKLRKAWKKDSKCK
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043834XLOC_043834Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070374TCONS_00070374Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007502Helicase-assoc_dom
IPR011709DUF1605
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004386 helicase activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007502Helicase-associated domainSMARTSM00847ha2_5coord: 98..218
e-value: 2.3E-17
score: 73.7
IPR007502Helicase-associated domainPFAMPF04408HA2coord: 99..216
e-value: 5.4E-20
score: 71.6
IPR011709Domain of unknown function DUF1605PFAMPF07717OB_NTP_bindcoord: 284..368
e-value: 2.7E-17
score: 62.8
NoneNo IPR availableGENE3D3.40.50.300coord: 1..58
e-value: 3.3E-16
score: 58.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..178

Blast
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BLAST of TCONS_00070374-protein vs. Swiss-Prot (Human)
Match: DHX37 (Probable ATP-dependent RNA helicase DHX37 OS=Homo sapiens GN=DHX37 PE=1 SV=1)

HSP 1 Score: 494.197 bits (1271), Expect = 3.994e-164
Identity = 248/496 (50.00%), Postives = 344/496 (69.35%), Query Frame = 0 
Query:    1 QVKRKIYDKVTGVSTFRITWTSKASANQRAGRAGRVGPGHCYRLYSSAVFQNDFEEFAEPEICGRPVEDLVLQMKSLCIDKVLNFPFPSPPELKSLQAAEKILLRLGALQ-------MRKMTNGQELAVISKMGRKMSRIPLLPRFSKMLILASLQNTHCLQYVIAIVAALTVKEIFTDDIDVKNLADTDNEID-IKRKRMLITQARRKWCGEGSISHLGDLMVILRAVGACEYSGCSQSFCQQNGLRYKSMVEIRKLRAQITNAVTSVCGEGNLYMDPKMQPPDHKQSEVIRKIVLSCVGDHVARKIPREEAKEKKLRNAYMCCLSEDPVYIHPTSSLFTKLPEYIVFHEIIETSKCYMRCCFEIEEEWLPSYAPYMCTLGKPAEEPAP--CIKEGRVFCHRSCNFGPHVWTLPACYVDSSDWPQRFRWFGRFFLEGLVITELEKNASLFLTPPAVMVKSWSHLQPKSERLLKALIDKDMDSEEKLRKAWKKDSK 486
            +VK++ YD+VTGVS+FR+TW S+ASA+QRAGRAGR  PGHCYRLYSSAVF  DFE+F  PEI  RPVEDL+LQMK+L ++KV+NFPFP+PP +++L AAE++L+ LGALQ       ++++   +    I+ +GR M+  P+ PR++KML L+  +   CL Y I IVA++TV+E+F +++D    A +D E+  +K KR  + Q +R W G+G+   LGDLMV+L AVGACEY+ C+  FC+ NGLRYK+M+EIR+LR Q+T AV +VC E  L++DPKMQPP   Q   +R+IV + +GDH+AR++  EE  E K RNAY   L +DPV+IHP+S LF +LPE++V+ EI+ET+K YM+    +E +W+P+  P  C   KP EEPAP  C + GRV CHR+  F    W LPA  VD  +   R++ F RF LEG V  +L    S  L+ P  M+K+W+ LQP++E LL+AL+ +  D  E L  AWKK+ K
Sbjct:  640 KVKKRYYDRVTGVSSFRVTWVSQASADQRAGRAGRTEPGHCYRLYSSAVF-GDFEQFPPPEITRRPVEDLILQMKALNVEKVINFPFPTPPSVEALLAAEELLIALGALQPPQKAERVKQLQENRLSCPITALGRTMATFPVAPRYAKMLALS--RQHGCLPYAITIVASMTVRELF-EELD--RPAASDEELTRLKSKRARVAQMKRTWAGQGASLKLGDLMVLLGAVGACEYASCTPQFCEANGLRYKAMMEIRRLRGQLTTAVNAVCPEAELFVDPKMQPPTESQVTYLRQIVTAGLGDHLARRVQSEEMLEDKWRNAYKTPLLDDPVFIHPSSVLFKELPEFVVYQEIVETTKMYMKGVSSVEVQWIPALLPSYCQFDKPLEEPAPTYCPERGRVLCHRASVFYRVGWPLPAIEVDFPEGIDRYKHFARFLLEGQVFRKLASYRSCLLSSPGTMLKTWARLQPRTESLLRALVAEKADCHEALLAAWKKNPK 1129
The following BLAST results are available for this feature:
BLAST of TCONS_00070374-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DHX373.994e-16450.00Probable ATP-dependent RNA helicase DHX37 OS=Homo ... [more]
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