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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070358 ID=TCONS_00070358|Name=TCONS_00070358|organism=Clytia hemisphaerica|type=transcript|length=2290bp
AATGGATTTCGAACTGAACAACTCAGGTCTTAATGATCTGCTAAAacata
ttttaaaattaatggATGAAAGTGACAGAAGATACAGTGATGCTGACgag
aaagtttcaaaatacATGCTGTCAAGAATGAAAAGCTGCAGAAACTCAAT
AAGACTTCTTAGCTCCATGAAGTCATCGTTAAGGCAAGATTTTGACCAGG
TACTATTTGATAAACTATCCCACGTATACATATGGACATTTTGGTAGTAA
TATGGGAAGAAAAACTTAAGGAGAGCAGAGAAAATAAACCTCAGTTGATT
GATGTTACAAAGCTCAAATTAGTCCCAGTCCATAACGGGCTCCCCGGTCG
ACCTGCTTATCATGTAAATTTTGAATTGGTTGATGCCCTGAGAAGTTATC
ATTTTAATTTGACAACTATTGCACAAATCTTTTGGCATTAATCGCACAAC
ATTATggagaaagatgcaaaatgaAGGCTACGATTCCaaccaaaaatttt
cagatataaCTGAGGACAATTTAGATACAGAAATAGTTCAAATTAAGCAA
AGTCATCCTTTAGCAGGTGAAAGAATGGTTTGTGGTATTTTGAGAGCTAA
GGGATATCATCTTCAAAGAAGAAAGGTTCGAGAAAGTATACATCGAGTTG
ATCCTATCAACACTATAAAAAGATGGCTTCAAAAAAATCCAAGATGGGTT
TACAGTGTGCCCGGCCCTAACAGCCTTTGGCACAACGATGGCTTGCACAA
GCTGATAAAGTTTGGTTTTGTCATTCACGCATGTATAGATGGCTTCTCCA
GAATGGTAACATCATTACATTGTGCCACAAATAACTATGCCAGCACTGCA
CTTCAAGGCTTTTTGACAGGTGTTTCGAAATTCGGCATACCTGCTCGTGT
TAGAGGAGATAGAGGGGGTGAAAATGTCCGAATCCTTGAATACATGAGGC
AAAATNCTCAAATTAGTCCCAGTCCATAACGGGCTCCCCGGTCGACCTGC
TTATCATGTAAATTTTGAATTGGTTGATGCCCTGAGAAGTTATCATTTTA
ATTTGACAACTATTGCACAAATCTTTTGGCATTAATCGCACAACATTATg
gagaaagatgcaaaatgaAGGCTACGATTCCaaccaaaaattttcagata
taaCTGAGGACAATTTAGATACAGAAATAGTTCAAATTAAGCAAAGTCAT
CCTTTAGCAGGTGAAAGAATGGTTTGTGGTATTTTGAGAGCTAAGGGATA
TCATCTTCAAAGAAGAAAGGTTCGAGAAAGTATACATCGAGTTGATCCTA
TCAACACTATAAAAAGATGGCTTCAAAAAAATCCAAGATGGGTTTACAGT
GTGCCCGGCCCTAACAGCCTTTGGCACAACGATGGCTTGCACAAGCTGAT
AAAGTTTGGTTTTGTCATTCACGCATGTATAGATGGCTTCTCCAGAATGG
TAACATCATTACATTGTGCCACAAATAACTATGCCAGCACTGCACTTCAA
GGCTTTTTGACAGGTGTTTCGAAATTCGGCATACCTGCTCGTGTTAGAGG
AGATAGAGGGGGCGAAAATGTCCGAATCCTTGAATACATGAGGCAAAATC
AAGGCTATGAAGGTGCTTACATTCAAGGTACCTCGGTACACAACCAGAGA
ATCGAAAGGCTACACTATGACACCACACACTGTGTCTTAGCACACTTCAT
TGATCTATTCAAGTATATGGAAGAGAATGGTTTGTTACAACGAGAGCTGA
ATATTGATCGTTTTGCTTtgcattttgtcttccttccaAGAATTCAAAAT
TCTCTCAATCAGTTTCAAGAAGGTTGGAATCATCATAAATTGTCAACAGA
GCACAATAAAACCCCCTATCAGCTTTGGCTTTTGGGGATGATGGATGAGG
ATAAACAATCACAAAGAGGTGTAAGGAGATTCTATAACGATACAAATGAT
GATCTATTCGGTGTGGATATGTCTTCCAATTTAAGTTTTATGCCAGACGA
TTTGTCAACAGTTGAGCTTCACAATGTCACCATCAATAATGAATCATTCA
TTCTGAACACTCTCAAGACAGAATTCAATCCCACGGATCATGACGGAAAC
TatggaatagcttgtttttctGCTGTCAAAGAAAGAATCTCTGAACTGTT
AGAATCTTTTGATCATTGATCACATTTTCTTTAGGAAACATTATTAATTA
AAAAAcacattatttttatttagtatGTTCTATTCACCATTATGACATGT
GTCATTTCAAAAGTATGTTGTAACCCATGGGAGAGTGGAT Run BLAST on NCBI protein sequence of TCONS_00070358-protein >TCONS_00070358-protein ID=TCONS_00070358-protein|Name=TCONS_00070358-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MQNEGYDSNQKFSDITEDNLDTEIVQIKQSHPLAGERMVCGILRAKGYHL
QRRKVRESIHRVDPINTIKRWLQKNPRWVYSVPGPNSLWHNDGLHKLIKF
GFVIHACIDGFSRMVTSLHCATNNYASTALQGFLTGVSKFGIPARVRGDR
GGENVRILEYMRQNQGYEGAYIQGTSVHNQRIERLHYDTTHCVLAHFIDL
FKYMEENGLLQRELNIDRFALHFVFLPRIQNSLNQFQEGWNHHKLSTEHN
KTPYQLWLLGMMDEDKQSQRGVRRFYNDTNDDLFGVDMSSNLSFMPDDLS
TVELHNVTINNESFILNTLKTEFNPTDHDGNYGIACFSAVKERISELLES
FDH Run BLAST on NCBI transcript from alignment at scaffold_54:105856..108145 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070358 ID=TCONS_00070358|Name=TCONS_00070358|organism=Clytia hemisphaerica|type=transcript|length=2290bp|location=Sequence derived from alignment at scaffold_54:105856..108145 (Clytia hemisphaerica)
ATCCACTCTCCCATGGGTTACAACATACTTTTGAAATGACACATGTCATA
ATGGTGAATAGAACatactaaataaaaataatgtgTTTTTTAATTAATAA
TGTTTCCTAAAGAAAATGTGATCAATGATCAAAAGATTCTAACAGTTCAG
AGATTCTTTCTTTGACAGCagaaaaacaagctattccatAGTTTCCGTCA
TGATCCGTGGGATTGAATTCTGTCTTGAGAGTGTTCAGAATGAATGATTC
ATTATTGATGGTGACATTGTGAAGCTCAACTGTTGACAAATCGTCTGGCA
TAAAACTTAAATTGGAAGACATATCCACACCGAATAGATCATCATTTGTA
TCGTTATAGAATCTCCTTACACCTCTTTGTGATTGTTTATCCTCATCCAT
CATCCCCAAAAGCCAAAGCTGATAGGGGGTTTTATTGTGCTCTGTTGACA
ATTTATGATGATTCCAACCTTCTTGAAACTGATTGAGAGAATTTTGAATT
CTtggaaggaagacaaaatgcaAAGCAAAACGATCAATATTCAGCTCTCG
TTGTAACAAACCATTCTCTTCCATATACTTGAATAGATCAATGAAGTGTG
CTAAGACACAGTGTGTGGTGTCATAGTGTAGCCTTTCGATTCTCTGGTTG
TGTACCGAGGTACCTTGAATGTAAGCACCTTCATAGCCTTGATTTTGCCT
CATGTATTCAAGGATTCGGACATTTTCGCCCCCTCTATCTCCTCTAACAC
GAGCAGGTATGCCGAATTTCGAAACACCTGTCAAAAAGCCTTGAAGTGCA
GTGCTGGCATAGTTATTTGTGGCACAATGTAATGATGTTACCATTCTGGA
GAAGCCATCTATACATGCGTGAATGACAAAACCAAACTTTATCAGCTTGT
GCAAGCCATCGTTGTGCCAAAGGCTGTTAGGGCCGGGCACACTGTAAACC
CATCTTGGATTTTTTTGAAGCCATCTTTTTATAGTGTTGATAGGATCAAC
TCGATGTATACTTTCTCGAACCTTTCTTCTTTGAAGATGATATCCCTTAG
CTCTCAAAATACCACAAACCATTCTTTCACCTGCTAAAGGATGACTTTGC
TTAATTTGAACTATTTCTGTATCTAAATTGTCCTCAGttatatctgaaaa
tttttggttGGAATCGTAGCCTtcattttgcatctttctccATAATGTTG
TGCGATTAATGCCAAAAGATTTGTGCAATAGTTGTCAAATTAAAATGATA
ACTTCTCAGGGCATCAACCAATTCAAAATTTACATGATAAGCAGGTCGAC
CGGGGAGCCCGTTATGGACTGGGACTAATTTGAGNATTTTGCCTCATGTA
TTCAAGGATTCGGACATTTTCACCCCCTCTATCTCCTCTAACACGAGCAG
GTATGCCGAATTTCGAAACACCTGTCAAAAAGCCTTGAAGTGCAGTGCTG
GCATAGTTATTTGTGGCACAATGTAATGATGTTACCATTCTGGAGAAGCC
ATCTATACATGCGTGAATGACAAAACCAAACTTTATCAGCTTGTGCAAGC
CATCGTTGTGCCAAAGGCTGTTAGGGCCGGGCACACTGTAAACCCATCTT
GGATTTTTTTGAAGCCATCTTTTTATAGTGTTGATAGGATCAACTCGATG
TATACTTTCTCGAACCTTTCTTCTTTGAAGATGATATCCCTTAGCTCTCA
AAATACCACAAACCATTCTTTCACCTGCTAAAGGATGACTTTGCTTAATT
TGAACTATTTCTGTATCTAAATTGTCCTCAGttatatctgaaaatttttg
gttGGAATCGTAGCCTtcattttgcatctttctccATAATGTTGTGCGAT
TAATGCCAAAAGATTTGTGCAATAGTTGTCAAATTAAAATGATAACTTCT
CAGGGCATCAACCAATTCAAAATTTACATGATAAGCAGGTCGACCGGGGA
GCCCGTTATGGACTGGGACTAATTTGAGCTTTGTAACATCAATCAACTGA
GGTTTATTTTCTCTGCTCTCCTTAAGTTTTTCTTCCCATATTACTACCAA
AATGTCCATATGTATACGTGGGATAGTTTATCAAATAGTACCTGGTCAAA
ATCTTGCCTTAACGATGACTTCATGGAGCTAAGAAGTCTTATTGAGTTTC
TGCAGCTTTTCATTCTTGACAGCATgtattttgaaactttctcGTCAGCA
TCACTGTATCTTCTGTCACTTTCATccattaattttaaaatatgtTTTAG
CAGATCATTAAGACCTGAGTTGTTCAGTTCGAAATCCATT Coding sequence (CDS) from alignment at scaffold_54:105856..108145 >TCONS_00070358 ID=TCONS_00070358|Name=TCONS_00070358|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_54:105856..108145 (Clytia hemisphaerica)
TCAATGATCAAAAGATTCTAACAGTTCAGAGATTCTTTCTTTGACAGCag
aaaaacaagctattccatAGTTTCCGTCATGATCCGTGGGATTGAATTCT
GTCTTGAGAGTGTTCAGAATGAATGATTCATTATTGATGGTGACATTGTG
AAGCTCAACTGTTGACAAATCGTCTGGCATAAAACTTAAATTGGAAGACA
TATCCACACCGAATAGATCATCATTTGTATCGTTATAGAATCTCCTTACA
CCTCTTTGTGATTGTTTATCCTCATCCATCATCCCCAAAAGCCAAAGCTG
ATAGGGGGTTTTATTGTGCTCTGTTGACAATTTATGATGATTCCAACCTT
CTTGAAACTGATTGAGAGAATTTTGAATTCTtggaaggaagacaaaatgc
aAAGCAAAACGATCAATATTCAGCTCTCGTTGTAACAAACCATTCTCTTC
CATATACTTGAATAGATCAATGAAGTGTGCTAAGACACAGTGTGTGGTGT
CATAGTGTAGCCTTTCGATTCTCTGGTTGTGTACCGAGGTACCTTGAATG
TAAGCACCTTCATAGCCTTGATTTTGCCTCATGTATTCAAGGATTCGGAC
ATTTTCGCCCCCTCTATCTCCTCTAACACGAGCAGGTATGCCGAATTTCG
AAACACCTGTCAAAAAGCCTTGAAGTGCAGTGCTGGCATAGTTATTTGTG
GCACAATGTAATGATGTTACCATTCTGGAGAAGCCATCTATACATGCGTG
AATGACAAAACCAAACTTTATCAGCTTGTGCAAGCCATCGTTGTGCCAAA
GGCTGTTAGGGCCGGGCACACTGTAAACCCATCTTGGATTTTTTTGAAGC
CATCTTTTTATAGTGTTGATAGGATCAACTCGATGTATACTTTCTCGAAC
CTTTCTTCTTTGAAGATGATATCCCTTAGCTCTCAAAATACCACAAACCA
TTCTTTCACCTGCTAAAGGATGACTTTGCTTAATTTGAACTATTTCTGTA
TCTAAATTGTCCTCAGttatatctgaaaatttttggttGGAATCGTAGCC
Ttcattttgcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070358-exon-scaffold_54-1491911889:105856..108145 | TCONS_00070358-exon-scaffold_54-1491911889:105856..108145 | Clytia hemisphaerica | exon |
| TCONS_00070358-exon-scaffold_54-1510915933:105856..108145 | TCONS_00070358-exon-scaffold_54-1510915933:105856..108145 | Clytia hemisphaerica | exon |
| TCONS_00070358-exon-scaffold_54-1575043694:105856..108145 | TCONS_00070358-exon-scaffold_54-1575043694:105856..108145 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:105856..108145 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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