|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070357 ID=TCONS_00070357|Name=TCONS_00070357|organism=Clytia hemisphaerica|type=transcript|length=1488bp
TTTCAGCGTATTCAAGTTCCTTTCCTTCCTCATTTCTAGAACACGTCGTC
TTCACATTTCTTGGTTTTCAAAGAATTCACCAAAGAAGTCCTCAACAACA
TGATGTCATTCATCTCAATGCCTGCTGTATTGGAGAAAATCATGCAAGAT
CCAACTTACAAATCGGGGAAATTCGGTGAAATTAAAGAACTTATTTTGGG
TATGTTGGAAACGTATAATTATGAATTAACATTGTTAGAAACAACTAAAA
AGATTCTTGGACGTGATTTACATGGCCAGTATAAACGACAGAAACAGTTT
TTGTCACGTGGATTTCAACCGGCCACTTCCAAATGTGGATTATGTTTCCG
GTCTACCAATACAACGGAAAACGTGACATCCATATCCGCATGCAACAATC
GTAATGAAATCGTTTTTTTCCGCTGTGGACATATTTTTCATAAATCCTGT
CTGGAAGGATCGATTGGGTTTGAGGAGGAACCTGTTTGCGTTCTATGCAA
CAAGTCAAATGTCATGCGGACAGTTACCTACCGCAGAACAAATAGTCGTG
GAAACAGTGATAGCAAGGATCGGAAATCTgggaaaaataagaaacttGGC
AAGAAAGCTGATTTCTTTGTGAGTTTGAGCACCGAACAAGAAAAAGGTTT
GTGTAATTTATGGAACGATACCAATAAAGCTGCTAAAAATGCATTGTTTA
AAGAACTAGTCAACGGCTCCTCTTCAAGCCATCGTCAACGAAgtggaaat
atttttgataaacgAACTTCTTCGACGGGAAGTCGAGGGGACTTGAGAGA
TGATAAGTTTTCGTTGAAACTGGCACCTCCTCCTTTACATAATAGATAAG
TTTTTCAACTGGTGCGTTTTCAATGTCTTGATTAATATGATACCTAATAA
TTtgactttctattttttattttccaaatggGATTTTTGATCTTGATCCA
TTGTGTGCTTTTGTATCTCTATCATAGATTTTCAGAggaactactctcgg
gtacctaatagccggggggccccgctaattaattttccgaaaattttcca
cccaggacattcttattccaaccccccccccgcttattgattttcgggaa
atttattttgaaagttaCCTCTTTTGctctaattctgctgtattagcctc
tttttcgaaaaatttccacccaagacatttttattcccaccccccccccc
cgcttattaattttcgagattttttccaacccccctgcttattccaaatc
ccccggctattaggtacccgagagtaaaaaAACAGCTTGATTCTGGCTTT
TTTCGAAAAGGACTGAGGGATGTTACTGTTTCcgaaattttgtaaattct
aAAACTGTACCGCCGCCGCGGGCGACGACGGGCgatttttcgtttctttt
ttaaagatcttGCCGTGAATCAATTTTCGTTAGAAATTTTGTGTCTGTAC
TAGACAAACTTTTTTGCACAAATCATCGAAAACAGTTG Run BLAST on NCBI protein sequence of TCONS_00070357-protein >TCONS_00070357-protein ID=TCONS_00070357-protein|Name=TCONS_00070357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MMSFISMPAVLEKIMQDPTYKSGKFGEIKELILGMLETYNYELTLLETTK
KILGRDLHGQYKRQKQFLSRGFQPATSKCGLCFRSTNTTENVTSISACNN
RNEIVFFRCGHIFHKSCLEGSIGFEEEPVCVLCNKSNVMRTVTYRRTNSR
GNSDSKDRKSGKNKKLGKKADFFVSLSTEQEKGLCNLWNDTNKAAKNALF
KELVNGSSSSHRQRSGNIFDKRTSSTGSRGDLRDDKFSLKLAPPPLHNR Run BLAST on NCBI transcript from alignment at scaffold_54:82808..84295 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070357 ID=TCONS_00070357|Name=TCONS_00070357|organism=Clytia hemisphaerica|type=transcript|length=1488bp|location=Sequence derived from alignment at scaffold_54:82808..84295 (Clytia hemisphaerica)
CAACTGTTTTCGATGATTTGTGCAAAAAAGTTTGTCTAGTACAGACACAA
AATTTCTAACGAAAATTGATTCACGGCaagatctttaaaaaagaaacgaa
aaatcGCCCGTCGTCGCCCGCGGCGGCGGTACAGTTTtagaatttacaaa
atttcgGAAACAGTAACATCCCTCAGTCCTTTTCGAAAAAAGCCAGAATC
AAGCTGTTtttttactctcgggtacctaatagccgggggatttggaataa
gcaggggggttggaaaaaatctcgaaaattaataagcggggggggggggt
gggaataaaaatgtcttgggtggaaatttttcgaaaaagaggctaataca
gcagaattagagCAAAAGAGGtaactttcaaaataaatttcccgaaaatc
aataagcggggggggggttggaataagaatgtcctgggtggaaaattttc
ggaaaattaattagcggggccccccggctattaggtacccgagagtagtt
ccTCTGAAAATCTATGATAGAGATACAAAAGCACACAATGGATCAAGATC
AAAAATCccatttggaaaataaaaaatagaaagtcaAATTATTAGGTATC
ATATTAATCAAGACATTGAAAACGCACCAGTTGAAAAACTTATCTATTAT
GTAAAGGAGGAGGTGCCAGTTTCAACGAAAACTTATCATCTCTCAAGTCC
CCTCGACTTCCCGTCGAAGAAGTTcgtttatcaaaaatatttccacTTCG
TTGACGATGGCTTGAAGAGGAGCCGTTGACTAGTTCTTTAAACAATGCAT
TTTTAGCAGCTTTATTGGTATCGTTCCATAAATTACACAAACCTTTTTCT
TGTTCGGTGCTCAAACTCACAAAGAAATCAGCTTTCTTGCCaagtttctt
atttttcccAGATTTCCGATCCTTGCTATCACTGTTTCCACGACTATTTG
TTCTGCGGTAGGTAACTGTCCGCATGACATTTGACTTGTTGCATAGAACG
CAAACAGGTTCCTCCTCAAACCCAATCGATCCTTCCAGACAGGATTTATG
AAAAATATGTCCACAGCGGAAAAAAACGATTTCATTACGATTGTTGCATG
CGGATATGGATGTCACGTTTTCCGTTGTATTGGTAGACCGGAAACATAAT
CCACATTTGGAAGTGGCCGGTTGAAATCCACGTGACAAAAACTGTTTCTG
TCGTTTATACTGGCCATGTAAATCACGTCCAAGAATCTTTTTAGTTGTTT
CTAACAATGTTAATTCATAATTATACGTTTCCAACATACCCAAAATAAGT
TCTTTAATTTCACCGAATTTCCCCGATTTGTAAGTTGGATCTTGCATGAT
TTTCTCCAATACAGCAGGCATTGAGATGAATGACATCATGTTGTTGAGGA
CTTCTTTGGTGAATTCTTTGAAAACCAAGAAATGTGAAGACGACGTGTTC
TAGAAATGAGGAAGGAAAGGAACTTGAATACGCTGAAA Coding sequence (CDS) from alignment at scaffold_54:82808..84295 >TCONS_00070357 ID=TCONS_00070357|Name=TCONS_00070357|organism=Clytia hemisphaerica|type=CDS|length=750bp|location=Sequence derived from alignment at scaffold_54:82808..84295 (Clytia hemisphaerica)
TTATCTATTATGTAAAGGAGGAGGTGCCAGTTTCAACGAAAACTTATCAT
CTCTCAAGTCCCCTCGACTTCCCGTCGAAGAAGTTcgtttatcaaaaata
tttccacTTCGTTGACGATGGCTTGAAGAGGAGCCGTTGACTAGTTCTTT
AAACAATGCATTTTTAGCAGCTTTATTGGTATCGTTCCATAAATTACACA
AACCTTTTTCTTGTTCGGTGCTCAAACTCACAAAGAAATCAGCTTTCTTG
CCaagtttcttatttttcccAGATTTCCGATCCTTGCTATCACTGTTTCC
ACGACTATTTGTTCTGCGGTAGGTAACTGTCCGCATGACATTTGACTTGT
TGCATAGAACGCAAACAGGTTCCTCCTCAAACCCAATCGATCCTTCCAGA
CAGGATTTATGAAAAATATGTCCACAGCGGAAAAAAACGATTTCATTACG
ATTGTTGCATGCGGATATGGATGTCACGTTTTCCGTTGTATTGGTAGACC
GGAAACATAATCCACATTTGGAAGTGGCCGGTTGAAATCCACGTGACAAA
AACTGTTTCTGTCGTTTATACTGGCCATGTAAATCACGTCCAAGAATCTT
TTTAGTTGTTTCTAACAATGTTAATTCATAATTATACGTTTCCAACATAC
CCAAAATAAGTTCTTTAATTTCACCGAATTTCCCCGATTTGTAAGTTGGA
TCTTGCATGATTTTCTCCAATACAGCAGGCATTGAGATGAATGACATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070357-exon-scaffold_54-1491911889:82808..84295 | TCONS_00070357-exon-scaffold_54-1491911889:82808..84295 | Clytia hemisphaerica | exon |
| TCONS_00070357-exon-scaffold_54-1510915933:82808..84295 | TCONS_00070357-exon-scaffold_54-1510915933:82808..84295 | Clytia hemisphaerica | exon |
| TCONS_00070357-exon-scaffold_54-1575043694:82808..84295 | TCONS_00070357-exon-scaffold_54-1575043694:82808..84295 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:82808..84295 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070357 vs. Swiss-Prot (Human)
Match: VPS8 (Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens GN=VPS8 PE=1 SV=3) HSP 1 Score: 101.679 bits (252), Expect = 1.677e-22 Identity = 90/294 (30.61%), Postives = 144/294 (48.98%), Query Frame = 1
Query: 4 QRIQVPFLPHF*NTSSSHFLVFKEFTKEVLNNMMSFISMPAVLEKIMQDPTYKSGKFGEIKELILGMXXXXXXXXXXXXXXKKILGRDLHGQYKRQKQFLSRGFQPATSKCGLCFRSTNTTENVTSISACNNRNEIVFFRCGHIFHKSCL---EGSIGFEEEP--VCVLCNKSNVMRTVTYRRTNSRXXXXXXXXXXXXXXXXXXXADFFVS-------LSTEQEKG---LCNLWNDTNKAAKNALFKELV-NGSSSSHRQRSGNIFDKRTSSTGSRGDLRDDKFSLKLAPPPL 837
Q++ +PH H K T +VLN+M +FI++P++L++I+QDP Y GK GEI+ LILGML+T+NYE TLLETT +L +DLH + ++RG P C +C + + + +EI+ F CGH++H CL E ++ FE + C C+ SN + ++ + + + + K D L +Q + LC L+ +++ AL EL N SS S+R SG+ S+ +++ F L+L PPP+
Sbjct: 1154 QKLSSSAIPHL------HSEALKSLTMQVLNSMAAFIALPSILQRILQDPVYGKGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICLQQYKRRQEMA--------DEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSENSSEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRL---ALLTELSQNRSSESYRPFSGS-----QSAPAFNSIFQNENFQLQLIPPPV 1425
The following BLAST results are available for this feature:
|
