TCONS_00070357-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00070357-protein
Unique Name	TCONS_00070357-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	249

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00070357-protein ID=TCONS_00070357-protein|Name=TCONS_00070357-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MMSFISMPAVLEKIMQDPTYKSGKFGEIKELILGMLETYNYELTLLETTK
KILGRDLHGQYKRQKQFLSRGFQPATSKCGLCFRSTNTTENVTSISACNN
RNEIVFFRCGHIFHKSCLEGSIGFEEEPVCVLCNKSNVMRTVTYRRTNSR
GNSDSKDRKSGKNKKLGKKADFFVSLSTEQEKGLCNLWNDTNKAAKNALF
KELVNGSSSSHRQRSGNIFDKRTSSTGSRGDLRDDKFSLKLAPPPLHNR

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_043824	XLOC_043824	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00070357	TCONS_00070357	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 57..172 e-value: 2.9E-8 score: 32.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 205..249
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..165
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 78..140
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 79..134 score: 8.993

Blast

[Close]

BLAST of TCONS_00070357-protein vs. Swiss-Prot (Human)
Match: VPS8 (Vacuolar protein sorting-associated protein 8 homolog OS=Homo sapiens GN=VPS8 PE=1 SV=3)

HSP 1 Score: 110.538 bits (275), Expect = 1.549e-27
Identity = 84/262 (32.06%), Postives = 129/262 (49.24%), Query Frame = 0

Query:    1 MMSFISMPAVLEKIMQDPTYKSGKFGEIKELILGMLETYNYELTLLETTKKILGRDLHGQYKRQKQFLSRGFQPATSKCGLCFRSTNTTENVTSISACNNRNEIVFFRCGHIFHKSCL---EGSIGFEEEP--VCVLCNKSNVMRTVTYR-------RTNSRGNSDSKDRKSGKNKKLGKKADFFVSLSTEQEKG---LCNLWNDTNKAAKNALFKELV-NGSSSSHRQRSGNIFDKRTSSTGSRGDLRDDKFSLKLAPPPL 246
            M +FI++P++L++I+QDP Y  GK GEI+ LILGML+T+NYE TLLETT  +L +DLH      +  ++RG  P    C +C +     + +         +EI+ F CGH++H  CL   E ++ FE +    C  C+ SN +  ++         R        S      K     KK      L  +Q +    LC L+  +++    AL  EL  N SS S+R  SG+      S+       +++ F L+L PPP+
Sbjct: 1180 MAAFIALPSILQRILQDPVYGKGKLGEIQGLILGMLDTFNYEQTLLETTTSLLNQDLHWSLCNLRASVTRGLNPKQDYCSICLQQYKRRQEMA--------DEIIVFSCGHLYHSFCLQNKECTVEFEGQTRWTCYKCSSSNKVGKLSENSSEIKKGRITPSQVKMSPSYHQSKGDPTAKKGTSEPVLDPQQIQAFDQLCRLYRGSSRL---ALLTELSQNRSSESYRPFSGS-----QSAPAFNSIFQNENFQLQLIPPPV 1425

The following BLAST results are available for this feature:

BLAST of TCONS_00070357-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00070357-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VPS8	1.549e-27	32.06	Vacuolar protein sorting-associated protein 8 homo...	[more]

You are here

TCONS_00070357-protein (polypeptide) - C. hemisphaerica