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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070344 ID=TCONS_00070344|Name=TCONS_00070344|organism=Clytia hemisphaerica|type=transcript|length=1094bp
AAAAAAGTGagagacaaaaaaaatttcaaaagactCCTGCAATGATTGAA
CAGCTTCGCAGTCCTGAATGAAACATTGGAAAAGGGTGCGTAAAGTCCAC
gtgagaaaaatgaagattatCTTGTTATTTGCAACAATGGCGCTATTTTG
CTGGAGTGAAACTGAGGCGTGTAGTGGAGGCGGTGGTGACAGTGGGCGGA
TATGGATTGGCGGTTGTTGGGCGACATTGAGCCGCTGCACGCACTGGAGT
AATTCTTTGACCGAAATCATGAGTAAGTCGTGCAATGACCGATGTAAAGA
TCTTGGCAAGTCTGGTGGTAGCTGCAAACTTTCGACATCGAATTGCCCGG
CATCGAATAATCCTTATCAATGCCAGTGTtattaaaactttcttttaatg
aCGACCCTCTTGTGGTTGTGTCACATAATGTATAACATAATGTATAACTT
TTATAAcattaatgtataacttttatAACATTAGTATTGAAAGATATTTC
CTTGGGCCAATAATTCAATGGTGAAAAGGAACAGAAATAAGGGTGTTTGA
ACGTGTTCTAGATTTACACTCTGATGGTGACCTCTTGTAGCGGAGGTCGA
AtatatagtttttaaataaaacatGGTTATTACATTGTTCTGGTTATTCT
TTTCACCATTATATATAACATTagtataatttgtttaccttaaAGTTCTG
TTTACTTCATATTTACTCTTGGTTGTTATTATCAAATAAATTGATTGTTT
ATCACTTATCTTAAAGTTTATTTACTCGCGTTCAGCGGCACTCTTTCCGG
CGTGTTGCGATGACGGATAGCGTCTAGTACTATTACAGTACAGTGTAATT
TGTAGTGTTATCCAATATTTTTCAGTATTTCAAAACCTTTTGCTAATCTT
GTTGCACTtgcccgggggtactaggtttgcgagaagacgtttttgggacc
cttaggaACCCTTAAAGACTTTTCTATTGTTGTCGATTTTTAGTTGATAT
Ttgtacaaatttttgaaaatcacgacccttcgagagaggaaatttcgatt
ttcgtgaatttggATCCTTACCCTTACCCTTGACTCGATTTGCT Run BLAST on NCBI protein sequence of TCONS_00070344-protein >TCONS_00070344-protein ID=TCONS_00070344-protein|Name=TCONS_00070344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
MKHWKRVRKVHVRKMKIILLFATMALFCWSETEACSGGGGDSGRIWIGGC
WATLSRCTHWSNSLTEIMSKSCNDRCKDLGKSGGSCKLSTSNCPASNNPY
QCQCY Run BLAST on NCBI transcript from alignment at scaffold_54:39165..44214- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070344 ID=TCONS_00070344|Name=TCONS_00070344|organism=Clytia hemisphaerica|type=transcript|length=5050bp|location=Sequence derived from alignment at scaffold_54:39165..44214- (Clytia hemisphaerica)
AAAAAAGTGAGAGACAAAAAAAATTTCAAAAGACTCCTGCAATGATTGAA
CAGCTTCGCAGTCCTGAATGAAACATTGGAAAAGGTATTTTACAAATTCA
TAATTACATTTTAAGGTTTTGGGGACACTAAAACACCCGAATAGGAAAAT
GGACAAAAATACTTACAAAATGGGGAAAATAAGAACATGTTAAGAACATT
TTTATCATCGTGCTTTCAGCTACAGTGAATCTCACCGCTCACTAATGGCT
GTATAATGGAGTATATTTAACAATACACAAAATTTACAATCGAGTCAAAA
GTTTTTACGACTTTGATAATTCTCAACGTCAAAAATACTTCTGTTAACAA
TATATAAAGATATCGTTACAATAAAAATATCTTTCCAACTTGTAAATATT
TGTGTTAAAAGTTGAACTGCTGTGTCTATCCCAGTCAGAAATAAGAAATT
ACTGAAAATCAAAGCCAATATTGGAACCGTCAATATTACGGAGCGGAGTC
TAACAGAATTCCGAATTGATTCCTCACTGCCGAATCTCTTGACCAAAATC
TTTGCCATCGATTCAAGAACAATCCCAACCCAATTGACCACACCCCAAGT
GAACAAAAGTTCAGTTGCACCATGCCAATATGCCACAAAGCCAAAACATA
AAAAAGAAGCTGAAATCTGTCTCGCCAATCCTTTCTTAGACCCTCCCATT
GGATAATAAATACAATGTTGAAGGAATTGGTACAGACCTCGATCAAATGT
TCGCCACATTTCCATAAAAGTTGTAGTCATGGAAACACATTTAGGTGGAC
CAGGTGGAGTAAAGCCATCAATTTTTGCAAATAAGCCAGAAAACCGGAAA
AATATGATATACTTGATGCAAAATAGTTGAACGTGAACCCAAGCGATGGA
CAACGCTTCAAGTCCAGTTTGCGTCGAAAGTAAATCTGTTTGATGGATCA
CTTTTGGAGTATACAAATGATTCATAAACAACTCCAAGCAAGCTGCGTAT
GTTATACACGTAATCACATTTTTGGCAATCTCGGAGATCCTGGATTCCTT
TGTTTTGCCGTTNATGTTATACACGTAATCACATCTTTGGCAATCTCGGA
GATCCTGGATTCCTTTGTTTTGCCGTTAGATTTAACAATTTCGAAATTTT
GCTGTTGAAAGTCTTTATAAGTCATCAGCGGCCCGTTCAAAAATAAAGGT
AGATAAAACATATAATGAAGAAAATCAGTGAGGTTGTTTTCTTGTCTTTC
TTCCATAACTGAAGAACCATAATCGATGCATCGGATGTAAACCATCAGCA
GTGAAAATCTGACGATGTCTGCTACTTGAGGACTAATGACGAAGAAATCT
TTCTGTATTTCGAATTTGAAGTTGATTGTATAGATCATGAACAAGGCGTA
GATCCACAGCAGAGAACGTCTTTCGACACGAATGATTATGTAGAAAAACA
TAATATGTGTCAAAAACAACATCACTGCGTTTGTAGAAAGTAACAAGGCC
AATGCAAGAGCTCCCGCCAGTGTAAAGTAAACTTTTCGATATTTTGGAAA
GTTTTGAGACATCAATCTACCAAGGATCGAATAAATGGAAAAAGCTATAC
CTAAGGGTAGAGCATGTTCCCACCACGCGTGCCATTCATGATCATCTGGT
GCACCATCTTCCAGGCCATCAATGTAGGTCAGCTTCCGTAAGCGATAAAC
GACGTGAAGAGGATAGAGACAAAGAAATATCCTTAAACTCCAGATCAAGG
TTGTTTCAATTTTCTGAAAACCATTCATTATTGCCTATTTCTTTACTTTG
AAGCTAAAAAGTTAGAAATGATAAAACAAAACCTTATGGTAAATGTCTAA
AATATCACATTATATTCCTTTTTTACAGGAATAACTGTTAAGAGAAATTC
AGTACCATATATGTGCGTGTTCCTGTAAGATTTTCAATCAAAAAGGGTAT
ATCAAAAAAACCTATCGACTTCTTGAAAGGGTCCCAAAACCATAGCAGTT
TCAAATTCAAAACATTGTGAACTTTTTCTTACGGATGAATTTTAGATACA
TGGTTTATATACATTACAAACGTTATAACATGCAATGTTTTCTGATTAGA
TTTGTTTGAAATTACACTTCCTAGTTTCCGGTGCATCTCCCCATTTCTTT
TTTTCCGTGAACTGGCAAGTAATCAATAAGGGACAAAGAGTCAAGAAAAT
GGACTGGAACACTTTTTTCGGACACACACTGTAAATACTCATATGTATAC
TTAAAGTCTATTCACGATAAGTGTGCACTCATTTTTCTTTTAGCTATAAC
TTTTGAAGGAATTCTTCGTTCTTTATAAATTTGGTATTGTTGGAGAGATA
TTAGTGAGTGGAACAATTTGGAATAAAAAAAATCTATAAAAAATTCTAAA
AATGAAGATGAAAATGAAGAAGAAAAAAATGAAGATCTTGTAGAAAGGTG
CTATAACTATCATTTTCACTGAAGTGACTCCTTCATTATCGAAACATTAC
TTTCACTGTGAAAAAAATTCTCAAAAATAATCATTCAGTCAAAATATATC
AAACAAAGTTATAAGCTGATTGACGTCTAAAAACGCTGTTTTCTGCTGTT
TTCTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNACTTTGTATCATAACTTTATATTGAATAAATAT
TTTAGTGAAATTTCTTCACAGTGATGACCTCCTAAGATCAAAGAATCTCT
CCAGTGAAAATGAAAGTTACTTCTCTACAAGATCTTCATTTTTTCCTTCT
TCATTTTCATCTTCGTTTTTAGAATTTTTTTAAAACTTTTTACTTCAAAT
TGTTCCACTCACAAATATCTCTCCAACGATACCAAATTTATAAAGAACAA
AGAATTCCTTCAAAAGTTATAGCTAAAAGAAAAAAGAGTGCACACTTATC
GTGAACAGACTTTAGTCCAATTGTTTCTTTGAGATGTGATATATTTACCT
TTCATAACTCAATGCTTTCAGCACATTTCTGCACATTTCCATAAAATGTT
GTGTCAGATAGGTAAAGGATAAAAAAACTAGGAAGTCTAACTCGCAGGTT
ACATTAATCAAAAGTTGCTGCAAGTTTTAAGAAGAAGTAAAAAAGACATC
AAAATTATATTCTCTGACTATTGTTCACTCTGTGTTTCAGAAACGTCATT
CAGCCGTTTATCCAATTACTTGCTGAAAGTTGATAGAATGATAAGAATGA
CGAATGATTACTATCACGGCTCGTATCTCTCTAAGGGAATGTATGTAGTA
TCCCATAGGCGGTTTTAGACCCTGTTGAACTTTATCAGATGGAGAGATTT
ATAATCGTCATTTCATTGTCTTTTAACGAGCGTTGCACTCCTTCGCATGT
TTCCGACGTACTTACTCTAAATACTTGTTCTTAAATCCGCCAGTACAATG
CATTGTTAGCTTGCCTTTGCTGACAATTTAATGGGACAAGCTGGAGCTTT
TACAAGCTCTTATTTGATTTGGTTGGTCGTTAAGATGTAATAAAAGAACG
CGTCGTCTCTATCACTTTAAATGACCAATTAGTGAAGTATCTTGTAAGTC
TTGTAAAAACTCCAGGTCATCCCAATTTAATGACAAATCTTGTTTCATGC
GTTGTGCGAGACAAACAAGAGCAAAAAACTTCCTTTCTAATAGCTGGTAG
ACTGCCAACTACTTCAGTATAAATACCCACCATTTCAATCAAAATACTTC
ATTCGATTCAAGTTTAAGCTACAGCAAAGATACTTTAAAAGGTAGGTGTT
AATTGCCTCGAAAATAAAGGAACAGAATTAAATTTATTAATGCTGTATTC
TAACTATCATATCTTTAAAACAATTTTCAGACTGCCGGGAAGATTTTCAC
GAAACGTGAAAATATATACGATCTTTCCTCATATTTTTAGGGTGCGTAAA
GTCCACGTGAGAAAAATGAAGATTATCTTGTTATTTGCAACAATGGCGCT
ATTTTGCTGGAGTGAAACTGAGGCGTGTAGTGGAGGCGGTGGTGACAGTG
GGCGGATATGGATTGGCGGTTGTTGGGCGACATTGAGCCGCTGCACGCAC
TGGAGTAATTCTTTGACCGAAATCATGAGTAAGTCGTGCAATGACCGATG
TAAAGATCTTGGCAAGTCTGGTGGTAGCTGCAAACTTTCGACATCGAATT
GCCCGGCATCGAATAATCCTTATCAATGCCAGTGTTATTAAAACTTTCTT
TTAATGACGACCCTCTTGTGGTTGTGTCACATAATGTATAACATAATGTA
TAACTTTTATAACATTAATGTATAACTTTTATAACATTAGTATTGAAAGA
TATTTCCTTGGGCCAATAATTCAATGGTGAAAAGGAACAGAAATAAGGGT
GTTTGAACGTGTTCTAGATTTACACTCTGATGGTGACCTCTTGTAGCGGA
GGTCGAATATATAGTTTTTAAATAAAACATGGTTATTACATTGTTCTGGT
TATTCTTTTCACCATTATATATAACATTAGTATAATTTGTTTACCTTAAA
GTTCTGTTTACTTCATATTTACTCTTGGTTGTTATTATCAAATAAATTGA
TTGTTTATCACTTATCTTAAAGTTTATTTACTCGCGTTCAGCGGCACTCT
TTCCGGCGTGTTGCGATGACGGATAGCGTCTAGTACTATTACAGTACAGT
GTAATTTGTAGTGTTATCCAATATTTTTCAGTATTTCAAAACCTTTTGCT
AATCTTGTTGCACTTGCCCGGGGGTACTAGGTTTGCGAGAAGACGTTTTT
GGGACCCTTAGGAACCCTTAAAGACTTTTCTATTGTTGTCGATTTTTAGT
TGATATTTGTACAAATTTTTGAAAATCACGACCCTTCGAGAGAGGAAATT
TCGATTTTCGTGAATTTGGATCCTTACCCTTACCCTTGACTCGATTTGCT
Coding sequence (CDS) from alignment at scaffold_54:39165..44214- >TCONS_00070344 ID=TCONS_00070344|Name=TCONS_00070344|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_54:39165..44214- (Clytia hemisphaerica)
GGTGCGTAAAGTCCACGTGAGAAAAATGAAGATTATCTTGTTATTTGCAA
CAATGGCGCTATTTTGCTGGAGTGAAACTGAGGCGTGTAGTGGAGGCGGT
GGTGACAGTGGGCGGATATGGATTGGCGGTTGTTGGGCGACATTGAGCCG
CTGCACGCACTGGAGTAATTCTTTGACCGAAATCATGAGTAAGTCGTGCA
ATGACCGATGTAAAGATCTTGGCAAGTCTGGTGGTAGCTGCAAACTTTCG
ACATCGAATTGCCCGGCATCGAATAATCCTTATCAATGCCAGTGTTATTA
AATGAAACATTGGAAAAGGGTGCGTAAAGTCCACGTGAGAAAAATGAAGA
TTATCTTGTTATTTGCAACAATGGCGCTATTTTGCTGGAGTGAAACTGAG
GCGTGTAGTGGAGGCGGTGGTGACAGTGGGCGGATATGGATTGGCGGTTG
TTGGGCGACATTGAGCCGCTGCACGCACTGGAGTAATTCTTTGACCGAAA
TCATGAGTAAGTCGTGCAATGACCGATGTAAAGATCTTGGCAAGTCTGGT
GGTAGCTGCAAACTTTCGACATCGAATTGCCCGGCATCGAATAATCCTTA
TCAATGCCAGTGTTATTAAATGAAACATTGGAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070344-exon-scaffold_54-1575043694:44131..44214 | TCONS_00070344-exon-scaffold_54-1575043694:44131..44214 | Clytia hemisphaerica | exon |
| TCONS_00070344-exon-scaffold_54-1575043694:39165..40174 | TCONS_00070344-exon-scaffold_54-1575043694:39165..40174 | Clytia hemisphaerica | exon |
| TCONS_00070344-exon-scaffold_54-1510915933:44131..44214 | TCONS_00070344-exon-scaffold_54-1510915933:44131..44214 | Clytia hemisphaerica | exon |
| TCONS_00070344-exon-scaffold_54-1510915933:39165..40174 | TCONS_00070344-exon-scaffold_54-1510915933:39165..40174 | Clytia hemisphaerica | exon |
| TCONS_00070344-exon-scaffold_54-1491911889:44131..44214 | TCONS_00070344-exon-scaffold_54-1491911889:44131..44214 | Clytia hemisphaerica | exon |
| TCONS_00070344-exon-scaffold_54-1491911889:39165..40174 | TCONS_00070344-exon-scaffold_54-1491911889:39165..40174 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:39165..44214 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR029230 | Macin |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006952 | defense response |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006952 |
defense response |
Blast
The following BLAST results are available for this feature:
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