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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070341 ID=TCONS_00070341|Name=TCONS_00070341|organism=Clytia hemisphaerica|type=transcript|length=944bp
CTTATCGATGttttctgtttcaatttttagaGAAAGCTGTGTTTCATATG
GTATGTTTCATCAACTCCGTGTCGACCATGGAAAAGAATTCTATCTAATG
TTGGGAATGcaagaaatctttgaaaatctgAGATCGAGAGGGGATATTCA
GTGTTATCGTCAAACAGAGTCAAAAAAGAATCTACCAGTAGAACGATTTT
GGGTAGAAATGAACGGGCGCGTGAACTATCCCTTGAAAACGGCACTTGTC
TGGTTAGACAATAATAATATCTTCGATATCAATgacgaaattcaaaaata
ttctgtatccagagtctctatggCTGTTGCTAAATATGGTGCTGGCATAT
GTATTAGATCGTGGAATGAACATCATATCAGAGgTCGAGGCAAACCAAGA
ACAATAAAAGACGAGACAAATTTGTTGCAGCCGTTACGGCCGACCGATCT
CCCAAATGTGTTAGAAGCAGTGGATCTCTATCAGCAGGTTTACAGAGGAA
ACTTGACAATGGAACGTGATTTTGGAAGTGATCCATTGTTTGATTTCCCA
GACTTACGGCAGGTTAGAAGGGCCGAATTCGAACAACACTTTTCTATGAA
GGACATATTCGAAGATTGTCTAAACTTCAGATCGCAGCTGCTGGGAGAAG
CTATTGTCTGGTATTATCAAAGAACCTTGGAACTCGCAAGATAGGAAGTC
TCATCAAAGTGTTGTCTGAACTTTAGTACtgctgtttttttctttaaaaa
gtctTATGTTTTACTAACAGCCgcaaagaaaacaattttatcTGTATTAC
TTTATAATGAAATGACAATTTTCTCAAGACACGAATATTCCACCGCTTTT
CCAGGTCAAGAAATACAGACATCTTTATTACAAAATGAGTTTATCCTTAT
CGAACTTAGCCAATATTCCTATAGAAAATGTATGTTATCTGGAT Run BLAST on NCBI protein sequence of TCONS_00070341-protein >TCONS_00070341-protein ID=TCONS_00070341-protein|Name=TCONS_00070341-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
LSMFSVSIFRESCVSYGMFHQLRVDHGKEFYLMLGMQEIFENLRSRGDIQ
CYRQTESKKNLPVERFWVEMNGRVNYPLKTALVWLDNNNIFDINDEIQKY
SVSRVSMAVAKYGAGICIRSWNEHHIRGRGKPRTIKDETNLLQPLRPTDL
PNVLEAVDLYQQVYRGNLTMERDFGSDPLFDFPDLRQVRRAEFEQHFSMK
DIFEDCLNFRSQLLGEAIVWYYQRTLELAR Run BLAST on NCBI transcript from alignment at scaffold_54:26636..28196- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070341 ID=TCONS_00070341|Name=TCONS_00070341|organism=Clytia hemisphaerica|type=transcript|length=1561bp|location=Sequence derived from alignment at scaffold_54:26636..28196- (Clytia hemisphaerica)
CTTATCGATGTTTTCTGTTTCAATTTTTAGAGAAAGCTGTGTTTCATATG
GTATGTTTCATCAACTCCGTGTCGACCATGGAAAAGAATTCTATCTAATG
TTGGGAATGCAAGAAATCTTTGAAAATCTGAGATCGAGAGGGGATATTCA
GTGTTATCGTCAAACAGAGTCAAAAAAGGTATTCTGGGATTTTTTAGTTT
TTAGTCTCTCTCTCTCTCCCTTTAAACATTCTCAAACTCAGGCAAGCTTC
AATAGTTTAAGATGATAAATCCAGGTCCAAGAGTGTAGTCCAATAGCAAG
TCCAGTTCAGCAACTCAAAGATATGACAACAAAATCTCTCTCTCTCTCTC
TAACTTGAATGATTATTAATGCCCTCTGCTTTGACTCCCTGTAACCTGGA
CGATTACTGATCACTTTTGGCGTTCCAAATGACGCCTTGTTTTGTTTCTA
AACATTGCAATGCAATTTTACATTTCAGCAGAATCTACCAGTAGAACGAT
TTTGGGTAGAAATGAACGGGCGCGTGAACTATCCCTTGAAAACGGCACTT
GTCTGGTTAGACAATAATAATATCTTCGATATCAATGACGAAATTCAAAA
ATATTCTGTATCCAGAGTCTCTATGGCTGTTGCTAAATATGGTGCTGGCA
TATGTATTAGATCGTGGAATGAACATCATATCAGAGGTAAAAGATTTTTG
ACACCTAAAGCCCTTATTCTGAACCGTCTCTAACGTTGACATCTTTAGAT
TGCACAAAATTCTAAACTATCGGCCTCCAATTCGCCACTGGTCAATGATA
TCTATGTTTAGACTATTCTCGATAATCCTGATTTATGAATCAAAAGTCGG
TTGAATCTTTAGGTGTTGGAAAAATATCGAAAATGGTGCTTTTCATAACA
TTCTCTTCCAATGTCAATTCAAACTTTTTTTAAACACCTGTTACAATTAA
TTTTTGCAAAGTTTATTGTTTTTTAATTTTGTTTCAATTTTAATTTTAAG
GTCGAGGCAAACCAAGAACAATAAAAGACGAGACAAATTTGTTGCAGCCG
TTACGGCCGACCGATCTCCCAAATGTGTTAGAAGCAGTGGATCTCTATCA
GCAGGTTTACAGAGGAAACTTGACAATGGAACGTGATTTTGGAAGTGATC
CATTGTTTGATTTCCCAGACTTACGGCAGGTTAGAAGGGCCGAATTCGAA
CAACACTTTTCTATGAAGGACATATTCGAAGATTGTCTAAACTTCAGATC
GCAGCTGCTGGGAGAAGCTATTGTCTGGTATTATCAAAGAACCTTGGAAC
TCGCAAGATAGGAAGTCTCATCAAAGTGTTGTCTGAACTTTAGTACTGCT
GTTTTTTTCTTTAAAAAGTCTTATGTTTTACTAACAGCCGCAAAGAAAAC
AATTTTATCTGTATTACTTTATAATGAAATGACAATTTTCTCAAGACACG
AATATTCCACCGCTTTTCCAGGTCAAGAAATACAGACATCTTTATTACAA
AATGAGTTTATCCTTATCGAACTTAGCCAATATTCCTATAGAAAATGTAT
GTTATCTGGAT Coding sequence (CDS) from alignment at scaffold_54:26636..28196- >TCONS_00070341 ID=TCONS_00070341|Name=TCONS_00070341|organism=Clytia hemisphaerica|type=CDS|length=2079bp|location=Sequence derived from alignment at scaffold_54:26636..28196- (Clytia hemisphaerica)
GTCGAGGCAAACCAAGAACAATAAAAGACGAGACAAATTTGTTGCAGCCG
TTACGGCCGACCGATCTCCCAAATGTGTTAGAAGCAGTGGATCTCTATCA
GCAGGTTTACAGAGGAAACTTGACAATGGAACGTGATTTTGGAAGTGATC
CATTGTTTGATTTCCCAGACTTACGGCAGGTTAGAAGGGCCGAATTCGAA
CAACACTTTTCTATGAAGGACATATTCGAAGATTGTCTAAACTTCAGATC
GCAGCTGCTGGGAGAAGCTATTGTCTGGTATTATCAAAGAACCTTGGAAC
TCGCAAGATAGAATCTACCAGTAGAACGATTTTGGGTAGAAATGAACGGG
CGCGTGAACTATCCCTTGAAAACGGCACTTGTCTGGTTAGACAATAATAA
TATCTTCGATATCAATGACGAAATTCAAAAATATTCTGTATCCAGAGTCT
CTATGGCTGTTGCTAAATATGGTGCTGGCATATGTATTAGATCGTGGAAT
GAACATCATATCAGAGTTATCGATGTTTTCTGTTTCAATTTTTAGAGAAA
GCTGTGTTTCATATGGTATGTTTCATCAACTCCGTGTCGACCATGGAAAA
GAATTCTATCTAATGTTGGGAATGCAAGAAATCTTTGAAAATCTGAGATC
GAGAGGGGATATTCAGTGTTATCGTCAAACAGAGTCAAAAAAGGTCGAGG
CAAACCAAGAACAATAAAAGACGAGACAAATTTGTTGCAGCCGTTACGGC
CGACCGATCTCCCAAATGTGTTAGAAGCAGTGGATCTCTATCAGCAGGTT
TACAGAGGAAACTTGACAATGGAACGTGATTTTGGAAGTGATCCATTGTT
TGATTTCCCAGACTTACGGCAGGTTAGAAGGGCCGAATTCGAACAACACT
TTTCTATGAAGGACATATTCGAAGATTGTCTAAACTTCAGATCGCAGCTG
CTGGGAGAAGCTATTGTCTGGTATTATCAAAGAACCTTGGAACTCGCAAG
ATAGAATCTACCAGTAGAACGATTTTGGGTAGAAATGAACGGGCGCGTGA
ACTATCCCTTGAAAACGGCACTTGTCTGGTTAGACAATAATAATATCTTC
GATATCAATGACGAAATTCAAAAATATTCTGTATCCAGAGTCTCTATGGC
TGTTGCTAAATATGGTGCTGGCATATGTATTAGATCGTGGAATGAACATC
ATATCAGAGTTATCGATGTTTTCTGTTTCAATTTTTAGAGAAAGCTGTGT
TTCATATGGTATGTTTCATCAACTCCGTGTCGACCATGGAAAAGAATTCT
ATCTAATGTTGGGAATGCAAGAAATCTTTGAAAATCTGAGATCGAGAGGG
GATATTCAGTGTTATCGTCAAACAGAGTCAAAAAAGGTCGAGGCAAACCA
AGAACAATAAAAGACGAGACAAATTTGTTGCAGCCGTTACGGCCGACCGA
TCTCCCAAATGTGTTAGAAGCAGTGGATCTCTATCAGCAGGTTTACAGAG
GAAACTTGACAATGGAACGTGATTTTGGAAGTGATCCATTGTTTGATTTC
CCAGACTTACGGCAGGTTAGAAGGGCCGAATTCGAACAACACTTTTCTAT
GAAGGACATATTCGAAGATTGTCTAAACTTCAGATCGCAGCTGCTGGGAG
AAGCTATTGTCTGGTATTATCAAAGAACCTTGGAACTCGCAAGATAGAAT
CTACCAGTAGAACGATTTTGGGTAGAAATGAACGGGCGCGTGAACTATCC
CTTGAAAACGGCACTTGTCTGGTTAGACAATAATAATATCTTCGATATCA
ATGACGAAATTCAAAAATATTCTGTATCCAGAGTCTCTATGGCTGTTGCT
AAATATGGTGCTGGCATATGTATTAGATCGTGGAATGAACATCATATCAG
AGTTATCGATGTTTTCTGTTTCAATTTTTAGAGAAAGCTGTGTTTCATAT
GGTATGTTTCATCAACTCCGTGTCGACCATGGAAAAGAATTCTATCTAAT
GTTGGGAATGCAAGAAATCTTTGAAAATCTGAGATCGAGAGGGGATATTC
AGTGTTATCGTCAAACAGAGTCAAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070341-exon-scaffold_54-1575043694:28019..28196 | TCONS_00070341-exon-scaffold_54-1575043694:28019..28196 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1575043694:27511..27715 | TCONS_00070341-exon-scaffold_54-1575043694:27511..27715 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1575043694:26636..27196 | TCONS_00070341-exon-scaffold_54-1575043694:26636..27196 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1510915933:28019..28196 | TCONS_00070341-exon-scaffold_54-1510915933:28019..28196 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1510915933:27511..27715 | TCONS_00070341-exon-scaffold_54-1510915933:27511..27715 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1510915933:26636..27196 | TCONS_00070341-exon-scaffold_54-1510915933:26636..27196 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1491911889:28019..28196 | TCONS_00070341-exon-scaffold_54-1491911889:28019..28196 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1491911889:27511..27715 | TCONS_00070341-exon-scaffold_54-1491911889:27511..27715 | Clytia hemisphaerica | exon |
| TCONS_00070341-exon-scaffold_54-1491911889:26636..27196 | TCONS_00070341-exon-scaffold_54-1491911889:26636..27196 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:26636..28196 - |
Blast
The following BLAST results are available for this feature:
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