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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070335 ID=TCONS_00070335|Name=TCONS_00070335|organism=Clytia hemisphaerica|type=transcript|length=3879bp
AATGGCTCGCCGGGGGCCCATTAATCTGCATACTCTCTTCTCTCTAACTc
tattgtaaaaattgtttgcTGAACGGTACAAAGATTTTCTTGCAATGGCG
GGTCGACATCAATGATCTTTGTCATTAATGATCTTTGACATTTTCAGCTC
TGTCACATCCAAAATCAATGTCATAAGCATGAAATCTTACTTGTGTTTTA
CTGCCTAAATTCTCCACTTGGGAAGACCACGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAACATTCCCAGTTCAAATCTAATGATAAAG
ATAATTTACAAGGCCTAAGATATGAACAAAACACAACTGTTATACCAGGT
ACTGCatcttttgtttggttttattcataaaaagttttatttgtattgta
tcatttgattataggatccagtttgttttcaatgatttctttttattgaa
ttttatttagtTGGATATCATTATGTTACTAATATAATGTTGATGGCATT
GATATCAAACCAATCGTTGTACTTTGTTATTGTCaaagtctaaaaataaa
aatctgaggGGGGGATTCctctatttttttcattttaaggggGGACATTC
TAACAAGGGGTACCggtaatttttgttcgatttaaggggggagttttctt
taagggcaaaattgcattttaaggggggactgAAAAAGTAGGCAGAAACC
ATGATACGTTTTTAAattcctttttgttttacttttggtcttcaaatcaa
aatttgagactCAGCATCGCGTAGTTAATATAAAactattctaataaaaa
aacctGTTAGTTTTAAAGTGCATCGGAATACTAAAATATTATATCAGCTC
AATCTTTAAGAAAGTACTTTTATGGTTCAGTAAAGAGGAACCGAAACTGA
ACTTCTCGGGAATGTTTGCTTTCCTATTTTCTTCCTATTCGTCCATTTAG
ATGGCTTTGACCCATTTTCGTTTACTGCGTTGTTGGAGAGAGCGTGCAAC
CTCTGGTCAAGTCGAAGCGCGTCGTGTGCTAGCGGAGATGCTGACACCTT
CAGGTGGTAATCGAGCGAATTGTTACAAATTCATTTCGTGGGTGACGGGG
TGTAGCAATTCGACTATTGGAAAAGTCAACGAGCAGATGAAAAGTACAGG
CGGAGATCGGGAGCCTCCGGAACACGGGCTGAAGAAATATTGGCGAGTCA
ATCCAAAGAGTGTAGGATTGAACGGCGAGGAGACAGAAGAAACAGCTTTC
GTTCCATCTTACCAAATCCTTCAAACAGCTGCCAGTTCTGCTGGCCTCGC
CCCTATGATGCAACAAAGTGCCGAGACCGAGAAACCGTTAGCCGAACCAC
AAAAGAAGAGAACGCGAAAGAAAGCTAAGAATAATACGGACATCAGTAAG
AATGATGTAGGAGTTGTACTGATGGGGgagaaaattgatttcaattctGC
GAGAACGGGAGGTCGTATCCCGGCCAATATCAAGATAGTCGAAAACACTG
ATTCACTTGTCTCAATGTCTGCTCAAAACACAAACTTATCCACTTATCCA
TCGGCTGTTATTGCAGTTAATGGACAATTCTCAAATAACGGGTTTATTTC
GATACCGGCAGGTTTGACGAACGAGTCTACTGTGACGGTACCGAACACAA
TGACACTACAAGCGCTTCAAttacaacagcaacaacaattACAACTTCAA
ATTCAATTGCTTCAACAACAGCTACAAAACTCTCAAGCTACTCTAGCCGC
CCAAGCACAGGCGGCCGCCCAACAGGCGATACGCCAACCTATGGAAAATG
CTGCTACAGAATATATAGTAACACCAAGTGCAATTGAACAATCAGTCGGA
AATCCTGTTGTAGTTCAAGCAGTTACGACTCCCATTCAAGCGTCGGTTAT
ACAACAAAACGTCGTGCCACAAAACCTTGTACCGAACGTTGTAAACACGG
AGACAGTGATGCCTACAATCGTTGCTTCAGCTAACAATAATCCAGGACTG
GCAGAGTTTCTTACACCAACGGCTAATATGAATAACATACTACAAGCCAT
CGGAAATAATCAAACCAAAGTCACTCCAAATATATCGCTAATGACTTCTC
CACTACGTAATACGAACAATgaaattaatattttgaccacGCTTGCTAAT
CCGGTTTCCCTCAATATGTTGAACACTTCGAGCATTAGTAATCTTACGGA
CTCTTCACCGCTGACTGACCTCCGCGCGGCCGCCCAACAGGTGCATTTAA
TTGCCGCCACTCAGGCTCCACCGACAGTAGCAGCTGTTAGTCAACCAATG
ACAATTTCTCTGCAACAACCTTCGATCTCTTTAGCTACATTACCCACAAT
GCTTTTCTCTTCCACAACACACGATCCTTTAGTACAACCCACTGTCCAAT
CACATACACAGCAGCAACAACTTATCATTCAACAAACGGCCGCCACTACG
CCTCAAATACAACGCGTGACTGAGCCTCAACACATGGTTTTACAACGTGC
GATTACAAGTTACTCTAACCCTGTCGCTGCAACGAATCAGCTGATAGTCT
ATACAACACCTCAAACCCCAGATACGAATAATACTTTAAATACAATGTTA
CCCCCTATAACGTCATTTAACGCTGACGCTTTTCTGACGAGCGTTTCTAG
CGGCGTTGGTACCGCTTACACTGTTGTACATAATACCTCAATGGCTGATT
TGTAAATAATGAGACTGTTTGTAAATATTATTGGAAAAGAAGTGAGACAC
TAATAAAATCGAAACATGATTTTctatgttttgaaattctttcaaGCTTT
ATAAGCTATAATAATgcgaaataataataatttagaCAATTGAAAtaatt
gttaattttttttgtagtgTATATAGAATGTTGTATCAgttaattattta
aaaattcgGTTTAGAAAATAAGGATGAATGACCTTCGAGTTAGAAAATAC
TATGTACCTCCTAAGCATTTCTTAAGTCCATTCGCTTTCAGTGTAGAAAC
CATACCATCGGAATtgagatgagctggagtttttacaagatgcttaactg
attggttatttttaaacaatagggatgacgcgttctttagaaaaagtaat
aaaatcgtttgtctcaacatttaacgaccaacagagtcatcaaagaactt
gtaaaaactccagctagTCCCTCGGAATTAGACTAATCccgtttgaaagt
ttttaaaaacaatggtAGAAAAATGAGTGAACACTTAAAGCTAGAGAATT
TACTATTTACTAGACCTATAGatatacacgttgttttttataagaacaaa
ctgtataagaacataaggcttcgatgaccaaaatatcaagaacaagttaa
gaacatattaaggctTCGTAAAacatccgatttcttaggagaatggacaa
aaatactcaaaaaacggtgacaataagaacatgttaagaatatttttagg
cttaaaactcaaaaagttaagaacatcgaaaggtttcaaaatttttggat
gttcttataaaaaacgtgtataatctTTACAAGAGGTTTATTCGTTAGAG
TATGAGTAGGAAAGCCTGTTAAAATTCTAGTTCCATTAAAAATCATCGTT
CTAACGACCACCTTAATTTATACGGTCATCGGGTCATAATCCAAACCACC
AGGCCACACACATCTCAACTTTTCAGCATCAAAATATCTTGGTTTCTCAC
ACACACCGCAACCCATTGTTGTTCCATGCCAACATGCTAAGAATTTATGT
TTATCGGTGGGATGAACTGCATTACCCAACCAACTTTGGCTCATTTTGGA
GCACAAGTCTGGACATTCCTCAATGGCCTTTTGTTGTTCTTCTTTGGTGG
GTGTCTCGTACTCGcatgctaaaaaaata Run BLAST on NCBI transcript from alignment at scaffold_54:31654..35797+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070335 ID=TCONS_00070335|Name=TCONS_00070335|organism=Clytia hemisphaerica|type=transcript|length=4144bp|location=Sequence derived from alignment at scaffold_54:31654..35797+ (Clytia hemisphaerica)
AATGGCTCGCCGGGGGCCCATTAATCTGCATACTCTCTTCTCTCTAACTc
tattgtaaaaattgtttgcTGAACGGTACAAAGATTTTCTTGCAATGGCG
GGTCGACATCAATGATCTTTGTCATTAATGATCTTTGACATTTTCAGCTC
TGTCACATCCAAAATCAATGTCATAAGCATGAAATCTTACTTGTGTTTTA
CTGCCTAAATTCTCCACTTGGGAAGACCACGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAACATTCCCAGTTCAAATCTAATGATAAAG
ATAATTTACAAGGCCTAAGATATGAACAAAACACAACTGTTATACCAGGT
ACTGCatcttttgtttggttttattcataaaaagttttatttgtattgta
tcatttgattataggatccagtttgttttcaatgatttctttttattgaa
ttttatttagtTGGATATCATTATGTTACTAATATAATGTTGATGGCATT
GATATCAAACCAATCGTTGTACTTTGTTATTGTCaaagtctaaaaataaa
aatctgaggGGGGGATTCctctatttttttcattttaaggggGGACATTC
TAACAAGGGGTACCggtaatttttgttcgatttaaggggggagttttctt
taagggcaaaattgcattttaaggggggactgAAAAAGTAGGCAGAAACC
ATGATACGTTTTTAAattcctttttgttttacttttggtcttcaaatcaa
aatttgagactCAGCATCGCGTAGTTAATATAAAactattctaataaaaa
aacctGTTAGTTTTAAAGTGCATCGGAATACTAAAATATTATATCAGCTC
AATCTTTAAGAAAGTACTTTTATGGTTCAGTAAAGAGGAACCGAAACTGA
ACTTCTCGGGAATGTTTGCTTTCCTATTTTCTTCCTATTCGTCCATTTAG
ATGGCTTTGACCCATTTTCGTTTACTGCGTTGTTGGAGAGAGCGTGCAAC
CTCTGGTCAAGTCGAAGCGCGTCGTGTGCTAGCGGAGATGCTGACACCTT
CAGGTGGTAATCGAGCGAATTGTTACAAATTCATTTCGTGGGTGACGGGG
TGTAGCAATTCGACTATTGGAAAAGTCAACGAGCAGATGAAAAGTACAGG
TACGTCGACTCATAAGGAGTATTTATATTGGAACAATTTTATCACAAAAT
TCGCGTTTTTTCGATACCACTTTTAGAATATACCTTTTCTACATTATTCA
TATTCATGTGTATAACCGTTGAAATTCTAGTTCAATGgttcaaaatgttt
ttactACTCTTTCTTTTTAGGTGTCTAAATTTCAAATCTTTCCTTGCAAA
ATGATCTGGAAGTTTTTCTGTTTTGATACTTATCAAtctgaaacattttt
cttttcttcgcTAGGCGGAGATCGGGAGCCTCCGGAACACGGGCTGAAGA
AATATTGGCGAGTCAATCCAAAGAGTGTAGGATTGAACGGCGAGGAGACA
GAAGAAACAGCTTTCGTTCCATCTTACCAAATCCTTCAAACAGCTGCCAG
TTCTGCTGGCCTCGCCCCTATGATGCAACAAAGTGCCGAGACCGAGAAAC
CGTTAGCCGAACCACAAAAGAAGAGAACGCGAAAGAAAGCTAAGAATAAT
ACGGACATCAGTAAGAATGATGTAGGAGTTGTACTGATGGGGgagaaaat
tgatttcaattctGCGAGAACGGGAGGTCGTATCCCGGCCAATATCAAGA
TAGTCGAAAACACTGATTCACTTGTCTCAATGTCTGCTCAAAACACAAAC
TTATCCACTTATCCATCGGCTGTTATTGCAGTTAATGGACAATTCTCAAA
TAACGGGTTTATTTCGATACCGGCAGGTTTGACGAACGAGTCTACTGTGA
CGGTACCGAACACAATGACACTACAAGCGCTTCAAttacaacagcaacaa
caattACAACTTCAAATTCAATTGCTTCAACAACAGCTACAAAACTCTCA
AGCTACTCTAGCCGCCCAAGCACAGGCGGCCGCCCAACAGGCGATACGCC
AACCTATGGAAAATGCTGCTACAGAATATATAGTAACACCAAGTGCAATT
GAACAATCAGTCGGAAATCCTGTTGTAGTTCAAGCAGTTACGACTCCCAT
TCAAGCGTCGGTTATACAACAAAACGTCGTGCCACAAAACCTTGTACCGA
ACGTTGTAAACACGGAGACAGTGATGCCTACAATCGTTGCTTCAGCTAAC
AATAATCCAGGACTGGCAGAGTTTCTTACACCAACGGCTAATATGAATAA
CATACTACAAGCCATCGGAAATAATCAAACCAAAGTCACTCCAAATATAT
CGCTAATGACTTCTCCACTACGTAATACGAACAATgaaattaatattttg
accacGCTTGCTAATCCGGTTTCCCTCAATATGTTGAACACTTCGAGCAT
TAGTAATCTTACGGACTCTTCACCGCTGACTGACCTCCGCGCGGCCGCCC
AACAGGTGCATTTAATTGCCGCCACTCAGGCTCCACCGACAGTAGCAGCT
GTTAGTCAACCAATGACAATTTCTCTGCAACAACCTTCGATCTCTTTAGC
TACATTACCCACAATGCTTTTCTCTTCCACAACACACGATCCTTTAGTAC
AACCCACTGTCCAATCACATACACAGCAGCAACAACTTATCATTCAACAA
ACGGCCGCCACTACGCCTCAAATACAACGCGTGACTGAGCCTCAACACAT
GGTTTTACAACGTGCGATTACAAGTTACTCTAACCCTGTCGCTGCAACGA
ATCAGCTGATAGTCTATACAACACCTCAAACCCCAGATACGAATAATACT
TTAAATACAATGTTACCCCCTATAACGTCATTTAACGCTGACGCTTTTCT
GACGAGCGTTTCTAGCGGCGTTGGTACCGCTTACACTGTTGTACATAATA
CCTCAATGGCTGATTTGTAAATAATGAGACTGTTTGTAAATATTATTGGA
AAAGAAGTGAGACACTAATAAAATCGAAACATGATTTTctatgttttgaa
attctttcaaGCTTTATAAGCTATAATAATgcgaaataataataatttag
aCAATTGAAAtaattgttaattttttttgtagtgTATATAGAATGTTGTA
TCAgttaattatttaaaaattcgGTTTAGAAAATAAGGATGAATGACCTT
CGAGTTAGAAAATACTATGTACCTCCTAAGCATTTCTTAAGTCCATTCGC
TTTCAGTGTAGAAACCATACCATCGGAATtgagatgagctggagttttta
caagatgcttaactgattggttatttttaaacaatagggatgacgcgttc
tttagaaaaagtaataaaatcgtttgtctcaacatttaacgaccaacaga
gtcatcaaagaacttgtaaaaactccagctagTCCCTCGGAATTAGACTA
ATCccgtttgaaagtttttaaaaacaatggtAGAAAAATGAGTGAACACT
TAAAGCTAGAGAATTTACTATTTACTAGACCTATAGatatacacgttgtt
ttttataagaacaaactgtataagaacataaggcttcgatgaccaaaata
tcaagaacaagttaagaacatattaaggctTCGTAAAacatccgatttct
taggagaatggacaaaaatactcaaaaaacggtgacaataagaacatgtt
aagaatatttttaggcttaaaactcaaaaagttaagaacatcgaaaggtt
tcaaaatttttggatgttcttataaaaaacgtgtataatctTTACAAGAG
GTTTATTCGTTAGAGTATGAGTAGGAAAGCCTGTTAAAATTCTAGTTCCA
TTAAAAATCATCGTTCTAACGACCACCTTAATTTATACGGTCATCGGGTC
ATAATCCAAACCACCAGGCCACACACATCTCAACTTTTCAGCATCAAAAT
ATCTTGGTTTCTCACACACACCGCAACCCATTGTTGTTCCATGCCAACAT
GCTAAGAATTTATGTTTATCGGTGGGATGAACTGCATTACCCAACCAACT
TTGGCTCATTTTGGAGCACAAGTCTGGACATTCCTCAATGGCCTTTTGTT
GTTCTTCTTTGGTGGGTGTCTCGTACTCGcatgctaaaaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070335-exon-scaffold_54-1491911889:31654..32802 | TCONS_00070335-exon-scaffold_54-1491911889:31654..32802 | Clytia hemisphaerica | exon |
| TCONS_00070335-exon-scaffold_54-1510915933:31654..32802 | TCONS_00070335-exon-scaffold_54-1510915933:31654..32802 | Clytia hemisphaerica | exon |
| TCONS_00070335-exon-scaffold_54-1575043694:31654..32802 | TCONS_00070335-exon-scaffold_54-1575043694:31654..32802 | Clytia hemisphaerica | exon |
| TCONS_00070335-exon-scaffold_54-1491911889:33068..35797 | TCONS_00070335-exon-scaffold_54-1491911889:33068..35797 | Clytia hemisphaerica | exon |
| TCONS_00070335-exon-scaffold_54-1510915933:33068..35797 | TCONS_00070335-exon-scaffold_54-1510915933:33068..35797 | Clytia hemisphaerica | exon |
| TCONS_00070335-exon-scaffold_54-1575043694:33068..35797 | TCONS_00070335-exon-scaffold_54-1575043694:33068..35797 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:31654..35797 + |
Blast
The following BLAST results are available for this feature:
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