XLOC_043809 (gene) - C. hemisphaerica

Overview
NameXLOC_043809
Unique NameXLOC_043809
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_54:31654..35797+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043809 ID=XLOC_043809|Name=XLOC_043809|organism=Clytia hemisphaerica|type=gene|length=4144bp|location=Sequence derived from alignment at scaffold_54:31654..35797+ (Clytia hemisphaerica)
AATGGCTCGCCGGGGGCCCATTAATCTGCATACTCTCTTCTCTCTAACTc
tattgtaaaaattgtttgcTGAACGGTACAAAGATTTTCTTGCAATGGCG
GGTCGACATCAATGATCTTTGTCATTAATGATCTTTGACATTTTCAGCTC
TGTCACATCCAAAATCAATGTCATAAGCATGAAATCTTACTTGTGTTTTA
CTGCCTAAATTCTCCACTTGGGAAGACCACGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNAAACATTCCCAGTTCAAATCTAATGATAAAG
ATAATTTACAAGGCCTAAGATATGAACAAAACACAACTGTTATACCAGGT
ACTGCatcttttgtttggttttattcataaaaagttttatttgtattgta
tcatttgattataggatccagtttgttttcaatgatttctttttattgaa
ttttatttagtTGGATATCATTATGTTACTAATATAATGTTGATGGCATT
GATATCAAACCAATCGTTGTACTTTGTTATTGTCaaagtctaaaaataaa
aatctgaggGGGGGATTCctctatttttttcattttaaggggGGACATTC
TAACAAGGGGTACCggtaatttttgttcgatttaaggggggagttttctt
taagggcaaaattgcattttaaggggggactgAAAAAGTAGGCAGAAACC
ATGATACGTTTTTAAattcctttttgttttacttttggtcttcaaatcaa
aatttgagactCAGCATCGCGTAGTTAATATAAAactattctaataaaaa
aacctGTTAGTTTTAAAGTGCATCGGAATACTAAAATATTATATCAGCTC
AATCTTTAAGAAAGTACTTTTATGGTTCAGTAAAGAGGAACCGAAACTGA
ACTTCTCGGGAATGTTTGCTTTCCTATTTTCTTCCTATTCGTCCATTTAG
ATGGCTTTGACCCATTTTCGTTTACTGCGTTGTTGGAGAGAGCGTGCAAC
CTCTGGTCAAGTCGAAGCGCGTCGTGTGCTAGCGGAGATGCTGACACCTT
CAGGTGGTAATCGAGCGAATTGTTACAAATTCATTTCGTGGGTGACGGGG
TGTAGCAATTCGACTATTGGAAAAGTCAACGAGCAGATGAAAAGTACAGG
TACGTCGACTCATAAGGAGTATTTATATTGGAACAATTTTATCACAAAAT
TCGCGTTTTTTCGATACCACTTTTAGAATATACCTTTTCTACATTATTCA
TATTCATGTGTATAACCGTTGAAATTCTAGTTCAATGgttcaaaatgttt
ttactACTCTTTCTTTTTAGGTGTCTAAATTTCAAATCTTTCCTTGCAAA
ATGATCTGGAAGTTTTTCTGTTTTGATACTTATCAAtctgaaacattttt
cttttcttcgcTAGGCGGAGATCGGGAGCCTCCGGAACACGGGCTGAAGA
AATATTGGCGAGTCAATCCAAAGAGTGTAGGATTGAACGGCGAGGAGACA
GAAGAAACAGCTTTCGTTCCATCTTACCAAATCCTTCAAACAGCTGCCAG
TTCTGCTGGCCTCGCCCCTATGATGCAACAAAGTGCCGAGACCGAGAAAC
CGTTAGCCGAACCACAAAAGAAGAGAACGCGAAAGAAAGCTAAGAATAAT
ACGGACATCAGTAAGAATGATGTAGGAGTTGTACTGATGGGGgagaaaat
tgatttcaattctGCGAGAACGGGAGGTCGTATCCCGGCCAATATCAAGA
TAGTCGAAAACACTGATTCACTTGTCTCAATGTCTGCTCAAAACACAAAC
TTATCCACTTATCCATCGGCTGTTATTGCAGTTAATGGACAATTCTCAAA
TAACGGGTTTATTTCGATACCGGCAGGTTTGACGAACGAGTCTACTGTGA
CGGTACCGAACACAATGACACTACAAGCGCTTCAAttacaacagcaacaa
caattACAACTTCAAATTCAATTGCTTCAACAACAGCTACAAAACTCTCA
AGCTACTCTAGCCGCCCAAGCACAGGCGGCCGCCCAACAGGCGATACGCC
AACCTATGGAAAATGCTGCTACAGAATATATAGTAACACCAAGTGCAATT
GAACAATCAGTCGGAAATCCTGTTGTAGTTCAAGCAGTTACGACTCCCAT
TCAAGCGTCGGTTATACAACAAAACGTCGTGCCACAAAACCTTGTACCGA
ACGTTGTAAACACGGAGACAGTGATGCCTACAATCGTTGCTTCAGCTAAC
AATAATCCAGGACTGGCAGAGTTTCTTACACCAACGGCTAATATGAATAA
CATACTACAAGCCATCGGAAATAATCAAACCAAAGTCACTCCAAATATAT
CGCTAATGACTTCTCCACTACGTAATACGAACAATgaaattaatattttg
accacGCTTGCTAATCCGGTTTCCCTCAATATGTTGAACACTTCGAGCAT
TAGTAATCTTACGGACTCTTCACCGCTGACTGACCTCCGCGCGGCCGCCC
AACAGGTGCATTTAATTGCCGCCACTCAGGCTCCACCGACAGTAGCAGCT
GTTAGTCAACCAATGACAATTTCTCTGCAACAACCTTCGATCTCTTTAGC
TACATTACCCACAATGCTTTTCTCTTCCACAACACACGATCCTTTAGTAC
AACCCACTGTCCAATCACATACACAGCAGCAACAACTTATCATTCAACAA
ACGGCCGCCACTACGCCTCAAATACAACGCGTGACTGAGCCTCAACACAT
GGTTTTACAACGTGCGATTACAAGTTACTCTAACCCTGTCGCTGCAACGA
ATCAGCTGATAGTCTATACAACACCTCAAACCCCAGATACGAATAATACT
TTAAATACAATGTTACCCCCTATAACGTCATTTAACGCTGACGCTTTTCT
GACGAGCGTTTCTAGCGGCGTTGGTACCGCTTACACTGTTGTACATAATA
CCTCAATGGCTGATTTGTAAATAATGAGACTGTTTGTAAATATTATTGGA
AAAGAAGTGAGACACTAATAAAATCGAAACATGATTTTctatgttttgaa
attctttcaaGCTTTATAAGCTATAATAATgcgaaataataataatttag
aCAATTGAAAtaattgttaattttttttgtagtgTATATAGAATGTTGTA
TCAgttaattatttaaaaattcgGTTTAGAAAATAAGGATGAATGACCTT
CGAGTTAGAAAATACTATGTACCTCCTAAGCATTTCTTAAGTCCATTCGC
TTTCAGTGTAGAAACCATACCATCGGAATtgagatgagctggagttttta
caagatgcttaactgattggttatttttaaacaatagggatgacgcgttc
tttagaaaaagtaataaaatcgtttgtctcaacatttaacgaccaacaga
gtcatcaaagaacttgtaaaaactccagctagTCCCTCGGAATTAGACTA
ATCccgtttgaaagtttttaaaaacaatggtAGAAAAATGAGTGAACACT
TAAAGCTAGAGAATTTACTATTTACTAGACCTATAGatatacacgttgtt
ttttataagaacaaactgtataagaacataaggcttcgatgaccaaaata
tcaagaacaagttaagaacatattaaggctTCGTAAAacatccgatttct
taggagaatggacaaaaatactcaaaaaacggtgacaataagaacatgtt
aagaatatttttaggcttaaaactcaaaaagttaagaacatcgaaaggtt
tcaaaatttttggatgttcttataaaaaacgtgtataatctTTACAAGAG
GTTTATTCGTTAGAGTATGAGTAGGAAAGCCTGTTAAAATTCTAGTTCCA
TTAAAAATCATCGTTCTAACGACCACCTTAATTTATACGGTCATCGGGTC
ATAATCCAAACCACCAGGCCACACACATCTCAACTTTTCAGCATCAAAAT
ATCTTGGTTTCTCACACACACCGCAACCCATTGTTGTTCCATGCCAACAT
GCTAAGAATTTATGTTTATCGGTGGGATGAACTGCATTACCCAACCAACT
TTGGCTCATTTTGGAGCACAAGTCTGGACATTCCTCAATGGCCTTTTGTT
GTTCTTCTTTGGTGGGTGTCTCGTACTCGcatgctaaaaaaata
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00070335TCONS_00070335Clytia hemisphaericatranscript
TCONS_00070336TCONS_00070336Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00070336-proteinTCONS_00070336-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_54supercontigscaffold_54:31654..35797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.11	6.87	4.3	3.74	9.54	7.92	7.6	6.99	3.39	6.38	4.73	2.7	3.41	4.48	3.29	4.26	5.59	5.19	4.01	4.31	5.15	5.47	6.91	7.01	6.94	6.76	6.2	4.78	9.48	7.85