TCONS_00070326 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070326
Unique NameTCONS_00070326
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length744

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070326 ID=TCONS_00070326|Name=TCONS_00070326|organism=Clytia hemisphaerica|type=transcript|length=744bp
tttttattttgtttttttgtgagTGATGAGTGATGACACTGGATTGGATA
AAGTGAGGCcaagaaagtttttgactttcagttttgtgtaaaaaaggtca
actttactttttcttttagataaatggaaattgagagaaaaatcaaaatg
aatcgCATAAATTTTATTCAAGTTATCTTCAAAATGTACTTTGAACTGCA
GCACAAAGAGGAGGATCGAAGAGAGTATGGACTTCATTATTTTGGTGGTT
TTAAATGCGCGATCAGTAAATACACAAACGAAGATACAGTCAACTACGGC
AGACCTGACGAACAACATTACGGACTTATGAATCTATGAAGGGACCAGAT
AGTAACGCAGGGACCATGAAGAGAAGGGACAATCGCCGTCATTCATTTTG
TTAGTTTTCCAAATCAAAGTGACTTACATTTACTGTACTGTAACCGCagt
aaaaactttatatattgaaTGATTAATACTCAATTTTTCTTGAGAGTAAT
TGGACAAAAAATGACTGAATACACATGCGAATTGATTGAGTCATGGAAGC
ATAAATAGAAATACTTTAATTTATTCAATTATATCATATTGACTCAGTGT
CATTACTGTTATTATTATTACACGTCTTTTAcgaatttgtaaaaaaattt
taaaggagaaaagttaaaatggaTGTTAAACTCTGTCAATCTTGCTAGCT
TTCTTTCCACAACTGGAATCGAAAAGATCTTACGAGTTCTTATT
Run BLAST on NCBI

transcript from alignment at scaffold_53:6770..7513

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070326 ID=TCONS_00070326|Name=TCONS_00070326|organism=Clytia hemisphaerica|type=transcript|length=744bp|location=Sequence derived from alignment at scaffold_53:6770..7513 (Clytia hemisphaerica)
AATAAGAACTCGTAAGATCTTTTCGATTCCAGTTGTGGAAAGAAAGCTAG
CAAGATTGACAGAGTTTAACAtccattttaacttttctcctttaaaattt
ttttacaaattcgTAAAAGACGTGTAATAATAATAACAGTAATGACACTG
AGTCAATATGATATAATTGAATAAATTAAAGTATTTCTATTTATGCTTCC
ATGACTCAATCAATTCGCATGTGTATTCAGTCATTTTTTGTCCAATTACT
CTCAAGAAAAATTGAGTATTAATCAttcaatatataaagtttttactGCG
GTTACAGTACAGTAAATGTAAGTCACTTTGATTTGGAAAACTAACAAAAT
GAATGACGGCGATTGTCCCTTCTCTTCATGGTCCCTGCGTTACTATCTGG
TCCCTTCATAGATTCATAAGTCCGTAATGTTGTTCGTCAGGTCTGCCGTA
GTTGACTGTATCTTCGTTTGTGTATTTACTGATCGCGCATTTAAAACCAC
CAAAATAATGAAGTCCATACTCTCTTCGATCCTCCTCTTTGTGCTGCAGT
TCAAAGTACATTTTGAAGATAACTTGAATAAAATTTATGcgattcatttt
gatttttctctcaatttccatttatctaaaagaaaaagtaaagttgacct
tttttacacaaaactgaaagtcaaaaactttcttgGCCTCACTTTATCCA
ATCCAGTGTCATCACTCATCActcacaaaaaaacaaaataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043800XLOC_043800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070326-exon-scaffold_53-1491911889:6770..7513TCONS_00070326-exon-scaffold_53-1491911889:6770..7513Clytia hemisphaericaexon
TCONS_00070326-exon-scaffold_53-1510915933:6770..7513TCONS_00070326-exon-scaffold_53-1510915933:6770..7513Clytia hemisphaericaexon
TCONS_00070326-exon-scaffold_53-1575043694:6770..7513TCONS_00070326-exon-scaffold_53-1575043694:6770..7513Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_53supercontigscaffold_53:6770..7513 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.208622	0	0	36.5505	30.0739	5.2207	7.2177	0.699476	2.49724	0.732568	0.138138	0.0882061	0.229007	2.62164	4.60548	0.285255	0.182794	0	0	0.324166	0.151037	0.112363	0.149572	0.0711979	0.0843708	1.30162	0.485855	0.40395	0.0749897
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070326 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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