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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070314 ID=TCONS_00070314|Name=TCONS_00070314|organism=Clytia hemisphaerica|type=transcript|length=2046bp TTCTTCTTGAAATAGAATTATCCTATGGATTACAAAACTAAAATTAAAGA AACTGATTTAATCATGCTTCAATTCCATTTAATAACccttgatttttaaa attttcactattactttctgaaagtgacTTTTTCACTCGATTGAACATTA CTTTTGATCCAATGAACCAAACTTAATACATGTTTCGTCAAAATTCTCTC CAGTGCAAAACTATTACTTTAGAATTTATAGAGTGGGAGAAAACTAAGTT CAAAAAGAGAAACTTTTCTGTACTGTGCCCGATATCCTTACAAAAAAACC TATAACAATATTGTTAAACCTttcaatatatatatatactcaACATAAAA AGATATTATCTTGAGATTCAGTTTTCATCTTCATTGATAGGTGGTGTAAC TTGAATAGTCggattttcatcaaaaagttctttatattCTTCTCTAGTTG GCTTACCAAGCATTTCTGGTAAAAACAAGCAGAGAATTGTACCAGCCACT GCGAAACCTGCCATTATGAAGTATGGTAGCTTAGGATCAATATCTTGTAA GACTGAAGTCAGGAATGGAGCAGCTGCAGAACCAAGACGTGAAAACATTT GGCAGATGTTCATTCCTTTGGAGCGTACAACAGTTGGGTAGATTTCAAAG GTCCACAAGAAAAGTGTGTTGAAAGCTAAGGTTGCCCCCATCCTTCCTGA GATAGCCATGCCAACTCTTGCCATTGTGTATGTTTCTGGTGTCAAACCAA TTGCAATGAGAAACAAGCATGATAAGCTAAAACCTGCGACAACCACCTTT TTCCTACCAACATAAATACTCATGAAAATTGTGATAGCATAGCCTGGAAC ATCAGCAAGCGAGGATAAAATGAAGTTAGTGTACAAATTTCCGCCAAGAT TTGATGATTCCAATGCAATTGCATAAAAAACAAGACCAATGCCAAACCAT AAGTAGCATTGCAAAGATGTCAATACAAACACTCTCCATTTGTTGAATAA GTGAACAtaagaaaaattggattttttcttttcacGATTTCTTACCAGAG AAACCTTCAATGGTTTACCGttaaattttcccatttttttcaATACATCT TCCGCTTTGCCAAACTGTTCCTTGGAAGACAGCCAATGAGGAGATTCCAT CAGAAACCATGAACCAATGAATGAGAGCAAAGGAAATGCACTTGTATACA ACACAAGCTTACGCCAAGAAGGTACATAATATGCCAGCATTGATACAATC ATCATTGAGAAAGTGAAGCCAAAGAAATAAATGTTGCCTACCCATCCTCT GGACTTAGGTGAATTACTTTCTGACAAATAGATATAAACTGTTGGAGTTA GAGCGCCAAAACCAGCTCCAATAACAGTGCGTAGAACCAAATATTGCCAT GGTGCAGTTACAAAGTAACCAGCTAAAGCAGCCAAAAACTCAGCAAAAAA TCCACCTATGATGACCGGCTTTCTTCCGTACGCATCAGCCAAGGGGCCTG ACAAAACGGCTCCTATCATCCCACCGATGAAGAACAAAGCAGTTGACAGT GCTTTAAGGTATTCTTTAGAACAAACTAAATCAAATTCAGTTGTAAAGGA ATATGTCTTTGGACGTGTATATTCCCATTGGTTGCGCTTCAAGTGACATC TCTTTGTGAAGAACTTTGTGCCTTCTTGAAAAGGACCCTTGGTACAAAAT GAGGATATATTAACATCCACACATTTCCATGGAGGGTCATCAGCGGTGTA GTATGTAACGAGAGACTGAAAAGATACACTGTTACTAAAGATAAACATGC ATATCAATAAAAGACCAAGTTGATATCTACCAAATGGTCCactttttgtt aatatttcatCAACAGTCATCCGTTCAGACTCTTCTTGATCATTCTGATG AAGAAGAGGGTCCTCGTCATGCtccatttatttattttgttttcttcttc aatttttttatttctaaaaagtgaaaaaatatattcaattggACATACAA ACATATTTTCATTGTATGATTTCAAACTTTTAACAAGAAATTATTG Run BLAST on NCBI protein sequence of TCONS_00070314-protein >TCONS_00070314-protein ID=TCONS_00070314-protein|Name=TCONS_00070314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MEHDEDPLLHQNDQEESERMTVDEILTKSGPFGRYQLGLLLICMFIFSNS VSFQSLVTYYTADDPPWKCVDVNISSFCTKGPFQEGTKFFTKRCHLKRNQ WEYTRPKTYSFTTEFDLVCSKEYLKALSTALFFIGGMIGAVLSGPLADAY GRKPVIIGGFFAEFLAALAGYFVTAPWQYLVLRTVIGAGFGALTPTVYIY LSESNSPKSRGWVGNIYFFGFTFSMMIVSMLAYYVPSWRKLVLYTSAFPL LSFIGSWFLMESPHWLSSKEQFGKAEDVLKKMGKFNGKPLKVSLVRNREK KKSNFSYVHLFNKWRVFVLTSLQCYLWFGIGLVFYAIALESSNLGGNLYT NFILSSLADVPGYAITIFMSIYVGRKKVVVAGFSLSCLFLIAIGLTPETY TMARVGMAISGRMGATLAFNTLFLWTFEIYPTVVRSKGMNICQMFSRLGS AAAPFLTSVLQDIDPKLPYFIMAGFAVAGTILCLFLPEMLGKPTREEYKE LFDENPTIQVTPPINEDEN Run BLAST on NCBI transcript from alignment at scaffold_52:89938..91983 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070314 ID=TCONS_00070314|Name=TCONS_00070314|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at scaffold_52:89938..91983 (Clytia hemisphaerica) CAATAATTTCTTGTTAAAAGTTTGAAATCATACAATGAAAATATGTTTGT
ATGTccaattgaatatattttttcactttttagaaataaaaaaattgaag
aagaaaacaaaataaataaatggaGCATGACGAGGACCCTCTTCTTCATC
AGAATGATCAAGAAGAGTCTGAACGGATGACTGTTGatgaaatattaaca
aaaagtGGACCATTTGGTAGATATCAACTTGGTCTTTTATTGATATGCAT
GTTTATCTTTAGTAACAGTGTATCTTTTCAGTCTCTCGTTACATACTACA
CCGCTGATGACCCTCCATGGAAATGTGTGGATGTTAATATATCCTCATTT
TGTACCAAGGGTCCTTTTCAAGAAGGCACAAAGTTCTTCACAAAGAGATG
TCACTTGAAGCGCAACCAATGGGAATATACACGTCCAAAGACATATTCCT
TTACAACTGAATTTGATTTAGTTTGTTCTAAAGAATACCTTAAAGCACTG
TCAACTGCTTTGTTCTTCATCGGTGGGATGATAGGAGCCGTTTTGTCAGG
CCCCTTGGCTGATGCGTACGGAAGAAAGCCGGTCATCATAGGTGGATTTT
TTGCTGAGTTTTTGGCTGCTTTAGCTGGTTACTTTGTAACTGCACCATGG
CAATATTTGGTTCTACGCACTGTTATTGGAGCTGGTTTTGGCGCTCTAAC
TCCAACAGTTTATATCTATTTGTCAGAAAGTAATTCACCTAAGTCCAGAG
GATGGGTAGGCAACATTTATTTCTTTGGCTTCACTTTCTCAATGATGATT
GTATCAATGCTGGCATATTATGTACCTTCTTGGCGTAAGCTTGTGTTGTA
TACAAGTGCATTTCCTTTGCTCTCATTCATTGGTTCATGGTTTCTGATGG
AATCTCCTCATTGGCTGTCTTCCAAGGAACAGTTTGGCAAAGCGGAAGAT
GTATtgaaaaaaatgggaaaatttaaCGGTAAACCATTGAAGGTTTCTCT
GGTAAGAAATCgtgaaaagaaaaaatccaatttttcttaTGTTCACTTAT
TCAACAAATGGAGAGTGTTTGTATTGACATCTTTGCAATGCTACTTATGG
TTTGGCATTGGTCTTGTTTTTTATGCAATTGCATTGGAATCATCAAATCT
TGGCGGAAATTTGTACACTAACTTCATTTTATCCTCGCTTGCTGATGTTC
CAGGCTATGCTATCACAATTTTCATGAGTATTTATGTTGGTAGGAAAAAG
GTGGTTGTCGCAGGTTTTAGCTTATCATGCTTGTTTCTCATTGCAATTGG
TTTGACACCAGAAACATACACAATGGCAAGAGTTGGCATGGCTATCTCAG
GAAGGATGGGGGCAACCTTAGCTTTCAACACACTTTTCTTGTGGACCTTT
GAAATCTACCCAACTGTTGTACGCTCCAAAGGAATGAACATCTGCCAAAT
GTTTTCACGTCTTGGTTCTGCAGCTGCTCCATTCCTGACTTCAGTCTTAC
AAGATATTGATCCTAAGCTACCATACTTCATAATGGCAGGTTTCGCAGTG
GCTGGTACAATTCTCTGCTTGTTTTTACCAGAAATGCTTGGTAAGCCAAC
TAGAGAAGaatataaagaactttttgatgaaaatccGACTATTCAAGTTA
CACCACCTATCAATGAAGATGAAAACTGAATCTCAAGATAATATCTTTTT
ATGTtgagtatatatatatattgaaAGGTTTAACAATATTGTTATAGGTT
TTTTTGTAAGGATATCGGGCACAGTACAGAAAAGTTTCTCTTTTTGAACT
TAGTTTTCTCCCACTCTATAAATTCTAAAGTAATAGTTTTGCACTGGAGA
GAATTTTGACGAAACATGTATTAAGTTTGGTTCATTGGATCAAAAGTAAT
GTTCAATCGAGTGAAAAAgtcactttcagaaagtaatagtgaaaatttta
aaaatcaaggGTTATTAAATGGAATTGAAGCATGATTAAATCAGTTTCTT
TAATTTTAGTTTTGTAATCCATAGGATAATTCTATTTCAAGAAGAA Coding sequence (CDS) from alignment at scaffold_52:89938..91983 >TCONS_00070314 ID=TCONS_00070314|Name=TCONS_00070314|organism=Clytia hemisphaerica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_52:89938..91983 (Clytia hemisphaerica) atggaGCATGACGAGGACCCTCTTCTTCATCAGAATGATCAAGAAGAGTC TGAACGGATGACTGTTGatgaaatattaacaaaaagtGGACCATTTGGTA GATATCAACTTGGTCTTTTATTGATATGCATGTTTATCTTTAGTAACAGT GTATCTTTTCAGTCTCTCGTTACATACTACACCGCTGATGACCCTCCATG GAAATGTGTGGATGTTAATATATCCTCATTTTGTACCAAGGGTCCTTTTC AAGAAGGCACAAAGTTCTTCACAAAGAGATGTCACTTGAAGCGCAACCAA TGGGAATATACACGTCCAAAGACATATTCCTTTACAACTGAATTTGATTT AGTTTGTTCTAAAGAATACCTTAAAGCACTGTCAACTGCTTTGTTCTTCA TCGGTGGGATGATAGGAGCCGTTTTGTCAGGCCCCTTGGCTGATGCGTAC GGAAGAAAGCCGGTCATCATAGGTGGATTTTTTGCTGAGTTTTTGGCTGC TTTAGCTGGTTACTTTGTAACTGCACCATGGCAATATTTGGTTCTACGCA CTGTTATTGGAGCTGGTTTTGGCGCTCTAACTCCAACAGTTTATATCTAT TTGTCAGAAAGTAATTCACCTAAGTCCAGAGGATGGGTAGGCAACATTTA TTTCTTTGGCTTCACTTTCTCAATGATGATTGTATCAATGCTGGCATATT ATGTACCTTCTTGGCGTAAGCTTGTGTTGTATACAAGTGCATTTCCTTTG CTCTCATTCATTGGTTCATGGTTTCTGATGGAATCTCCTCATTGGCTGTC TTCCAAGGAACAGTTTGGCAAAGCGGAAGATGTATtgaaaaaaatgggaa aatttaaCGGTAAACCATTGAAGGTTTCTCTGGTAAGAAATCgtgaaaag aaaaaatccaatttttcttaTGTTCACTTATTCAACAAATGGAGAGTGTT TGTATTGACATCTTTGCAATGCTACTTATGGTTTGGCATTGGTCTTGTTT TTTATGCAATTGCATTGGAATCATCAAATCTTGGCGGAAATTTGTACACT AACTTCATTTTATCCTCGCTTGCTGATGTTCCAGGCTATGCTATCACAAT TTTCATGAGTATTTATGTTGGTAGGAAAAAGGTGGTTGTCGCAGGTTTTA GCTTATCATGCTTGTTTCTCATTGCAATTGGTTTGACACCAGAAACATAC ACAATGGCAAGAGTTGGCATGGCTATCTCAGGAAGGATGGGGGCAACCTT AGCTTTCAACACACTTTTCTTGTGGACCTTTGAAATCTACCCAACTGTTG TACGCTCCAAAGGAATGAACATCTGCCAAATGTTTTCACGTCTTGGTTCT GCAGCTGCTCCATTCCTGACTTCAGTCTTACAAGATATTGATCCTAAGCT ACCATACTTCATAATGGCAGGTTTCGCAGTGGCTGGTACAATTCTCTGCT TGTTTTTACCAGAAATGCTTGGTAAGCCAACTAGAGAAGaatataaagaa ctttttgatgaaaatccGACTATTCAAGTTACACCACCTATCAATGAAGA TGAAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070314-exon-scaffold_52-1491911889:89938..91983 | TCONS_00070314-exon-scaffold_52-1491911889:89938..91983 | Clytia hemisphaerica | exon |
TCONS_00070314-exon-scaffold_52-1510915933:89938..91983 | TCONS_00070314-exon-scaffold_52-1510915933:89938..91983 | Clytia hemisphaerica | exon |
TCONS_00070314-exon-scaffold_52-1575043694:89938..91983 | TCONS_00070314-exon-scaffold_52-1575043694:89938..91983 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_52 | supercontig | scaffold_52:89938..91983 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0022857 | transmembrane transporter activity |
GO:0005215 | transporter activity |
Vocabulary: Cellular Component
Term | Definition |
GO:0016021 | integral component of membrane |
Vocabulary: Biological Process
Term | Definition |
GO:0055085 | transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0055085 |
transmembrane transport |
cellular_component |
GO:0016021 |
integral component of membrane |
molecular_function |
GO:0022857 |
transmembrane transporter activity |
molecular_function |
GO:0005215 |
transporter activity |
Blast
BLAST of TCONS_00070314 vs. Swiss-Prot (Human)
Match: S22A5 (Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 4.441e-49 Identity = 117/415 (28.19%), Postives = 216/415 (52.05%), Query Frame = -3
Query: 422 NQWEYTRPKTYS-FTTEFDLVCSKEYLKALSTALFFIGGMIGAVLSGPLADAYGRKPVIIXXXXXXXXXXXXXXFVTAPWQYLVLRTVIGAGFGALTPTVYIYLSESNSPKSR---GWVGNIYFFGFTFSMMIVSMLAYYVPSWRKLVLYTSAFPLLSFIGSWFLMESPHWLSSKEQFGKAEDVLKKMGKFNGKPLKVSLVRNRE------KKKSNFSYVHLFNKWRVFVLTSLQCYLWFGIGLVFYAIALESSNLGGNLYTNFILSSLADVPGYAITIFMSIYVGRKKVVVAGFSLSCLFLIAIGLTP-ETYTMARVGMAISGRMGATLAFNTLFLWTFEIYPTVVRSKGMNICQMFSRLGSAAAPFLTSVLQDIDPKLPYFIMAGFAVAGTILCLFLPEMLGKPTREEYKELF 1633
+ WE+++ S TE++LVC ++ L+ +LFF+G ++G+ +SG L+D +GRK V+ + + F ++VL ++G G + ++ +E R +G F+ F + M++ + AY++ WR L++ + +L WF+ ESP WL S+ +F +AE +++K K NG + ++ E KK+ + + + L W + ++T + LW I + ++ ++L++ NL G+++ N LS++ +VP Y + + Y+ R+ + L L+ + L P + Y +A V + + G+ G T AF+ ++++T E+YPTVVR+ G+ + SRLGS +P+ L D LPY +M + IL LFLPE G P + ++
Sbjct: 115 DGWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQLSDRFGRKNVLFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFSTLGVCIFYAFGY--MVLPLFAYFIRDWRMLLVALTMPGVLCVALWWFIPESPRWLISQGRFEEAEVIIRKAAKANGIVVPSTIFDPSELQDLSSKKQQSHNILDLLRTWNIRMVTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRYSMATALFLGGSVLLFMQLVPPDLYYLATV-LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFV-YLGAYDRFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQML 525
The following BLAST results are available for this feature:
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