TCONS_00070314 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070314
Unique NameTCONS_00070314
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2046

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070314 ID=TCONS_00070314|Name=TCONS_00070314|organism=Clytia hemisphaerica|type=transcript|length=2046bp
TTCTTCTTGAAATAGAATTATCCTATGGATTACAAAACTAAAATTAAAGA
AACTGATTTAATCATGCTTCAATTCCATTTAATAACccttgatttttaaa
attttcactattactttctgaaagtgacTTTTTCACTCGATTGAACATTA
CTTTTGATCCAATGAACCAAACTTAATACATGTTTCGTCAAAATTCTCTC
CAGTGCAAAACTATTACTTTAGAATTTATAGAGTGGGAGAAAACTAAGTT
CAAAAAGAGAAACTTTTCTGTACTGTGCCCGATATCCTTACAAAAAAACC
TATAACAATATTGTTAAACCTttcaatatatatatatactcaACATAAAA
AGATATTATCTTGAGATTCAGTTTTCATCTTCATTGATAGGTGGTGTAAC
TTGAATAGTCggattttcatcaaaaagttctttatattCTTCTCTAGTTG
GCTTACCAAGCATTTCTGGTAAAAACAAGCAGAGAATTGTACCAGCCACT
GCGAAACCTGCCATTATGAAGTATGGTAGCTTAGGATCAATATCTTGTAA
GACTGAAGTCAGGAATGGAGCAGCTGCAGAACCAAGACGTGAAAACATTT
GGCAGATGTTCATTCCTTTGGAGCGTACAACAGTTGGGTAGATTTCAAAG
GTCCACAAGAAAAGTGTGTTGAAAGCTAAGGTTGCCCCCATCCTTCCTGA
GATAGCCATGCCAACTCTTGCCATTGTGTATGTTTCTGGTGTCAAACCAA
TTGCAATGAGAAACAAGCATGATAAGCTAAAACCTGCGACAACCACCTTT
TTCCTACCAACATAAATACTCATGAAAATTGTGATAGCATAGCCTGGAAC
ATCAGCAAGCGAGGATAAAATGAAGTTAGTGTACAAATTTCCGCCAAGAT
TTGATGATTCCAATGCAATTGCATAAAAAACAAGACCAATGCCAAACCAT
AAGTAGCATTGCAAAGATGTCAATACAAACACTCTCCATTTGTTGAATAA
GTGAACAtaagaaaaattggattttttcttttcacGATTTCTTACCAGAG
AAACCTTCAATGGTTTACCGttaaattttcccatttttttcaATACATCT
TCCGCTTTGCCAAACTGTTCCTTGGAAGACAGCCAATGAGGAGATTCCAT
CAGAAACCATGAACCAATGAATGAGAGCAAAGGAAATGCACTTGTATACA
ACACAAGCTTACGCCAAGAAGGTACATAATATGCCAGCATTGATACAATC
ATCATTGAGAAAGTGAAGCCAAAGAAATAAATGTTGCCTACCCATCCTCT
GGACTTAGGTGAATTACTTTCTGACAAATAGATATAAACTGTTGGAGTTA
GAGCGCCAAAACCAGCTCCAATAACAGTGCGTAGAACCAAATATTGCCAT
GGTGCAGTTACAAAGTAACCAGCTAAAGCAGCCAAAAACTCAGCAAAAAA
TCCACCTATGATGACCGGCTTTCTTCCGTACGCATCAGCCAAGGGGCCTG
ACAAAACGGCTCCTATCATCCCACCGATGAAGAACAAAGCAGTTGACAGT
GCTTTAAGGTATTCTTTAGAACAAACTAAATCAAATTCAGTTGTAAAGGA
ATATGTCTTTGGACGTGTATATTCCCATTGGTTGCGCTTCAAGTGACATC
TCTTTGTGAAGAACTTTGTGCCTTCTTGAAAAGGACCCTTGGTACAAAAT
GAGGATATATTAACATCCACACATTTCCATGGAGGGTCATCAGCGGTGTA
GTATGTAACGAGAGACTGAAAAGATACACTGTTACTAAAGATAAACATGC
ATATCAATAAAAGACCAAGTTGATATCTACCAAATGGTCCactttttgtt
aatatttcatCAACAGTCATCCGTTCAGACTCTTCTTGATCATTCTGATG
AAGAAGAGGGTCCTCGTCATGCtccatttatttattttgttttcttcttc
aatttttttatttctaaaaagtgaaaaaatatattcaattggACATACAA
ACATATTTTCATTGTATGATTTCAAACTTTTAACAAGAAATTATTG
Run BLAST on NCBI

protein sequence of TCONS_00070314-protein

>TCONS_00070314-protein ID=TCONS_00070314-protein|Name=TCONS_00070314-protein|organism=Clytia hemisphaerica|type=polypeptide|length=519bp
MEHDEDPLLHQNDQEESERMTVDEILTKSGPFGRYQLGLLLICMFIFSNS
VSFQSLVTYYTADDPPWKCVDVNISSFCTKGPFQEGTKFFTKRCHLKRNQ
WEYTRPKTYSFTTEFDLVCSKEYLKALSTALFFIGGMIGAVLSGPLADAY
GRKPVIIGGFFAEFLAALAGYFVTAPWQYLVLRTVIGAGFGALTPTVYIY
LSESNSPKSRGWVGNIYFFGFTFSMMIVSMLAYYVPSWRKLVLYTSAFPL
LSFIGSWFLMESPHWLSSKEQFGKAEDVLKKMGKFNGKPLKVSLVRNREK
KKSNFSYVHLFNKWRVFVLTSLQCYLWFGIGLVFYAIALESSNLGGNLYT
NFILSSLADVPGYAITIFMSIYVGRKKVVVAGFSLSCLFLIAIGLTPETY
TMARVGMAISGRMGATLAFNTLFLWTFEIYPTVVRSKGMNICQMFSRLGS
AAAPFLTSVLQDIDPKLPYFIMAGFAVAGTILCLFLPEMLGKPTREEYKE
LFDENPTIQVTPPINEDEN
Run BLAST on NCBI

transcript from alignment at scaffold_52:89938..91983

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070314 ID=TCONS_00070314|Name=TCONS_00070314|organism=Clytia hemisphaerica|type=transcript|length=2046bp|location=Sequence derived from alignment at scaffold_52:89938..91983 (Clytia hemisphaerica)
CAATAATTTCTTGTTAAAAGTTTGAAATCATACAATGAAAATATGTTTGT
ATGTccaattgaatatattttttcactttttagaaataaaaaaattgaag
aagaaaacaaaataaataaatggaGCATGACGAGGACCCTCTTCTTCATC
AGAATGATCAAGAAGAGTCTGAACGGATGACTGTTGatgaaatattaaca
aaaagtGGACCATTTGGTAGATATCAACTTGGTCTTTTATTGATATGCAT
GTTTATCTTTAGTAACAGTGTATCTTTTCAGTCTCTCGTTACATACTACA
CCGCTGATGACCCTCCATGGAAATGTGTGGATGTTAATATATCCTCATTT
TGTACCAAGGGTCCTTTTCAAGAAGGCACAAAGTTCTTCACAAAGAGATG
TCACTTGAAGCGCAACCAATGGGAATATACACGTCCAAAGACATATTCCT
TTACAACTGAATTTGATTTAGTTTGTTCTAAAGAATACCTTAAAGCACTG
TCAACTGCTTTGTTCTTCATCGGTGGGATGATAGGAGCCGTTTTGTCAGG
CCCCTTGGCTGATGCGTACGGAAGAAAGCCGGTCATCATAGGTGGATTTT
TTGCTGAGTTTTTGGCTGCTTTAGCTGGTTACTTTGTAACTGCACCATGG
CAATATTTGGTTCTACGCACTGTTATTGGAGCTGGTTTTGGCGCTCTAAC
TCCAACAGTTTATATCTATTTGTCAGAAAGTAATTCACCTAAGTCCAGAG
GATGGGTAGGCAACATTTATTTCTTTGGCTTCACTTTCTCAATGATGATT
GTATCAATGCTGGCATATTATGTACCTTCTTGGCGTAAGCTTGTGTTGTA
TACAAGTGCATTTCCTTTGCTCTCATTCATTGGTTCATGGTTTCTGATGG
AATCTCCTCATTGGCTGTCTTCCAAGGAACAGTTTGGCAAAGCGGAAGAT
GTATtgaaaaaaatgggaaaatttaaCGGTAAACCATTGAAGGTTTCTCT
GGTAAGAAATCgtgaaaagaaaaaatccaatttttcttaTGTTCACTTAT
TCAACAAATGGAGAGTGTTTGTATTGACATCTTTGCAATGCTACTTATGG
TTTGGCATTGGTCTTGTTTTTTATGCAATTGCATTGGAATCATCAAATCT
TGGCGGAAATTTGTACACTAACTTCATTTTATCCTCGCTTGCTGATGTTC
CAGGCTATGCTATCACAATTTTCATGAGTATTTATGTTGGTAGGAAAAAG
GTGGTTGTCGCAGGTTTTAGCTTATCATGCTTGTTTCTCATTGCAATTGG
TTTGACACCAGAAACATACACAATGGCAAGAGTTGGCATGGCTATCTCAG
GAAGGATGGGGGCAACCTTAGCTTTCAACACACTTTTCTTGTGGACCTTT
GAAATCTACCCAACTGTTGTACGCTCCAAAGGAATGAACATCTGCCAAAT
GTTTTCACGTCTTGGTTCTGCAGCTGCTCCATTCCTGACTTCAGTCTTAC
AAGATATTGATCCTAAGCTACCATACTTCATAATGGCAGGTTTCGCAGTG
GCTGGTACAATTCTCTGCTTGTTTTTACCAGAAATGCTTGGTAAGCCAAC
TAGAGAAGaatataaagaactttttgatgaaaatccGACTATTCAAGTTA
CACCACCTATCAATGAAGATGAAAACTGAATCTCAAGATAATATCTTTTT
ATGTtgagtatatatatatattgaaAGGTTTAACAATATTGTTATAGGTT
TTTTTGTAAGGATATCGGGCACAGTACAGAAAAGTTTCTCTTTTTGAACT
TAGTTTTCTCCCACTCTATAAATTCTAAAGTAATAGTTTTGCACTGGAGA
GAATTTTGACGAAACATGTATTAAGTTTGGTTCATTGGATCAAAAGTAAT
GTTCAATCGAGTGAAAAAgtcactttcagaaagtaatagtgaaaatttta
aaaatcaaggGTTATTAAATGGAATTGAAGCATGATTAAATCAGTTTCTT
TAATTTTAGTTTTGTAATCCATAGGATAATTCTATTTCAAGAAGAA

Coding sequence (CDS) from alignment at scaffold_52:89938..91983

>TCONS_00070314 ID=TCONS_00070314|Name=TCONS_00070314|organism=Clytia hemisphaerica|type=CDS|length=1560bp|location=Sequence derived from alignment at scaffold_52:89938..91983 (Clytia hemisphaerica)
atggaGCATGACGAGGACCCTCTTCTTCATCAGAATGATCAAGAAGAGTC
TGAACGGATGACTGTTGatgaaatattaacaaaaagtGGACCATTTGGTA
GATATCAACTTGGTCTTTTATTGATATGCATGTTTATCTTTAGTAACAGT
GTATCTTTTCAGTCTCTCGTTACATACTACACCGCTGATGACCCTCCATG
GAAATGTGTGGATGTTAATATATCCTCATTTTGTACCAAGGGTCCTTTTC
AAGAAGGCACAAAGTTCTTCACAAAGAGATGTCACTTGAAGCGCAACCAA
TGGGAATATACACGTCCAAAGACATATTCCTTTACAACTGAATTTGATTT
AGTTTGTTCTAAAGAATACCTTAAAGCACTGTCAACTGCTTTGTTCTTCA
TCGGTGGGATGATAGGAGCCGTTTTGTCAGGCCCCTTGGCTGATGCGTAC
GGAAGAAAGCCGGTCATCATAGGTGGATTTTTTGCTGAGTTTTTGGCTGC
TTTAGCTGGTTACTTTGTAACTGCACCATGGCAATATTTGGTTCTACGCA
CTGTTATTGGAGCTGGTTTTGGCGCTCTAACTCCAACAGTTTATATCTAT
TTGTCAGAAAGTAATTCACCTAAGTCCAGAGGATGGGTAGGCAACATTTA
TTTCTTTGGCTTCACTTTCTCAATGATGATTGTATCAATGCTGGCATATT
ATGTACCTTCTTGGCGTAAGCTTGTGTTGTATACAAGTGCATTTCCTTTG
CTCTCATTCATTGGTTCATGGTTTCTGATGGAATCTCCTCATTGGCTGTC
TTCCAAGGAACAGTTTGGCAAAGCGGAAGATGTATtgaaaaaaatgggaa
aatttaaCGGTAAACCATTGAAGGTTTCTCTGGTAAGAAATCgtgaaaag
aaaaaatccaatttttcttaTGTTCACTTATTCAACAAATGGAGAGTGTT
TGTATTGACATCTTTGCAATGCTACTTATGGTTTGGCATTGGTCTTGTTT
TTTATGCAATTGCATTGGAATCATCAAATCTTGGCGGAAATTTGTACACT
AACTTCATTTTATCCTCGCTTGCTGATGTTCCAGGCTATGCTATCACAAT
TTTCATGAGTATTTATGTTGGTAGGAAAAAGGTGGTTGTCGCAGGTTTTA
GCTTATCATGCTTGTTTCTCATTGCAATTGGTTTGACACCAGAAACATAC
ACAATGGCAAGAGTTGGCATGGCTATCTCAGGAAGGATGGGGGCAACCTT
AGCTTTCAACACACTTTTCTTGTGGACCTTTGAAATCTACCCAACTGTTG
TACGCTCCAAAGGAATGAACATCTGCCAAATGTTTTCACGTCTTGGTTCT
GCAGCTGCTCCATTCCTGACTTCAGTCTTACAAGATATTGATCCTAAGCT
ACCATACTTCATAATGGCAGGTTTCGCAGTGGCTGGTACAATTCTCTGCT
TGTTTTTACCAGAAATGCTTGGTAAGCCAACTAGAGAAGaatataaagaa
ctttttgatgaaaatccGACTATTCAAGTTACACCACCTATCAATGAAGA
TGAAAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043790XLOC_043790Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070314-proteinTCONS_00070314-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070314-exon-scaffold_52-1491911889:89938..91983TCONS_00070314-exon-scaffold_52-1491911889:89938..91983Clytia hemisphaericaexon
TCONS_00070314-exon-scaffold_52-1510915933:89938..91983TCONS_00070314-exon-scaffold_52-1510915933:89938..91983Clytia hemisphaericaexon
TCONS_00070314-exon-scaffold_52-1575043694:89938..91983TCONS_00070314-exon-scaffold_52-1575043694:89938..91983Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:89938..91983 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.56211	5.38626	2.95205	3.16623	14.7412	10.455	8.86422	8.80997	5.61473	7.92237	5.57646	3.36991	3.68634	4.22847	4.51819	5.81375	4.33493	4.19054	4.16759	6.65978	2.67021	3.25153	6.77599	7.28774	4.3959	5.69979	3.01892	1.6392	4.20141	4.21506
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005828MFS_sugar_transport-like
IPR005829Sugar_transporter_CS
IPR020846MFS_dom
Vocabulary: Molecular Function
TermDefinition
GO:0022857transmembrane transporter activity
GO:0005215transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0055085transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity
molecular_function GO:0005215 transporter activity
Blast
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BLAST of TCONS_00070314 vs. Swiss-Prot (Human)
Match: S22A5 (Solute carrier family 22 member 5 OS=Homo sapiens GN=SLC22A5 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 4.441e-49
Identity = 117/415 (28.19%), Postives = 216/415 (52.05%), Query Frame = -3 
Query:  422 NQWEYTRPKTYS-FTTEFDLVCSKEYLKALSTALFFIGGMIGAVLSGPLADAYGRKPVIIXXXXXXXXXXXXXXFVTAPWQYLVLRTVIGAGFGALTPTVYIYLSESNSPKSR---GWVGNIYFFGFTFSMMIVSMLAYYVPSWRKLVLYTSAFPLLSFIGSWFLMESPHWLSSKEQFGKAEDVLKKMGKFNGKPLKVSLVRNRE------KKKSNFSYVHLFNKWRVFVLTSLQCYLWFGIGLVFYAIALESSNLGGNLYTNFILSSLADVPGYAITIFMSIYVGRKKVVVAGFSLSCLFLIAIGLTP-ETYTMARVGMAISGRMGATLAFNTLFLWTFEIYPTVVRSKGMNICQMFSRLGSAAAPFLTSVLQDIDPKLPYFIMAGFAVAGTILCLFLPEMLGKPTREEYKELF 1633
            + WE+++    S   TE++LVC  ++   L+ +LFF+G ++G+ +SG L+D +GRK V+      +   +    F      ++VL  ++G G  +     ++  +E      R     +G   F+ F +  M++ + AY++  WR L++  +   +L     WF+ ESP WL S+ +F +AE +++K  K NG  +  ++    E      KK+ + + + L   W + ++T +   LW  I + ++ ++L++ NL G+++ N  LS++ +VP Y +   +  Y+ R+  +     L    L+ + L P + Y +A V + + G+ G T AF+ ++++T E+YPTVVR+ G+ +    SRLGS  +P+    L   D  LPY +M    +   IL LFLPE  G P  +   ++ 
Sbjct:  115 DGWEFSQDVYLSTIVTEWNLVCEDDWKAPLTISLFFVGVLLGSFISGQLSDRFGRKNVLFVTMGMQTGFSFLQIFSKNFEMFVVLFVLVGMGQISNYVAAFVLGTEILGKSVRIIFSTLGVCIFYAFGY--MVLPLFAYFIRDWRMLLVALTMPGVLCVALWWFIPESPRWLISQGRFEEAEVIIRKAAKANGIVVPSTIFDPSELQDLSSKKQQSHNILDLLRTWNIRMVTIMSIMLWMTISVGYFGLSLDTPNLHGDIFVNCFLSAMVEVPAYVLAWLLLQYLPRRYSMATALFLGGSVLLFMQLVPPDLYYLATV-LVMVGKFGVTAAFSMVYVYTAELYPTVVRNMGVGVSSTASRLGSILSPYFV-YLGAYDRFLPYILMGSLTILTAILTLFLPESFGTPLPDTIDQML 525
The following BLAST results are available for this feature:
BLAST of TCONS_00070314 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
S22A54.441e-4928.19Solute carrier family 22 member 5 OS=Homo sapiens ... [more]
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