TCONS_00070303 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070303
Unique NameTCONS_00070303
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length532

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070303 ID=TCONS_00070303|Name=TCONS_00070303|organism=Clytia hemisphaerica|type=transcript|length=532bp
CACATTTTTCGCTGTGACCTACATGAGCAATACCCTATAAGGAGAGAACA
CTTTCCGGACTGCAATAGCAAGAAAACACGCCAAATTCAAAGGAGTTGTG
AGAAAATCATCAATAAATGCTTGCCCACCAACCAAATGAGACATCATGTT
TATGatGCACTGACGAAAAGTTTCTGTTCAGAACTAACTtgtgaacattt
ttattcacaATTCGAAGATaTGAGTTTGTCGACATTGATCTTGTTGATTG
TCTCAATCCCTTCCATCATCTTCTCCTGCTTTGCTGGTTGTTGGAAACTC
TGTGAATATCTGTCTGAGGAAGACGAAATGTACGTTCCAGTATCAGAGCT
TGAGAAACGACGCAATGAGCGGCTCCAACGCGTCCGAGACGCACAAAACG
CCGCCATGAAGAACCGAATGGGAAGGTATGGGAATAGCACTCTTGTTCAT
CGGAGATACAGATGAGAAAAAAGTGTTGGTGACTTCCTCCTTCTGAGCTG
GTATGTTTTGCAACCAGGTCGTTGAGTACCAG
Run BLAST on NCBI

transcript from alignment at scaffold_52:54968..61383-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070303 ID=TCONS_00070303|Name=TCONS_00070303|organism=Clytia hemisphaerica|type=transcript|length=6416bp|location=Sequence derived from alignment at scaffold_52:54968..61383- (Clytia hemisphaerica)
CACATTTTTCGCTGTGACCTACATGAGCAATACCCTATAAGGAGAGAACA
CTTTCCGGACTGCAATAGCAAGAAAACACGCCAAATTCAAAGGAGTTGTG
AGGTAGGAATTGAAATTGTGTAATATTTCTACGATTGGTCTTGCACTAAC
GCAGGAAGGGTCAGTACTAAAATTTCAGACAGTAAAATGATTTTCTGGAA
TTTTTGCATACCACAACTTTCAAGAAGTACACAAGAATTAATCACATTTT
AAGGTATGTGTACACCTTTTTTCCGATTTTTTGTCAAAAAAAATTTTTTT
CAGTCAAAGTGGAAGAAAAGTTACTGGATTTCATTTTGGTAAAATCGCGA
TCTTAAAATCTTTTTTTGATCCAGAGTTATAACAATTTAAATTTTAAAAC
AAAGTTCGTCTTATGATGGATTATTTACTCAAATAATTGTCTCTTTCGGA
AACAACAAAGACAAAAGAGAGAATTCAGCTGATGTTNTAACAGAGATCAC
TCTATTTTTGGTATTCTCAGGACCAATTTTCCCTGAAATGCTTATTTTGG
CAACATGAAATTTATTTTATACGCAAGTAAATTCTTTGATACTATAGAAT
GAGTAGTGATTTATGAATTGATTGATAAAATAAGAAGAACCACCCCCCAC
AATTATTAGATCAATATTCATGATATACACCACTGCAATGATTTCACGAA
ATTATGCAACTTTTCTGTTTTTGTTTCCACCCAATACGTCACTTTTTCTT
TTCTTTAAGTGACGTATTGGGTGGAAAGTTTTCAAAAGACTCTTAGTGGT
GCATTGCAATTACTGGTCATTCTTGAAGAATGGATACACATACAGCCCTC
GAATTTCAGGTCCTAAAAGCCGACCAAAGAGTGCGTATGGTCGGCAGTTC
ATTGCCGACCATATTCATTGATTCTCTCGGCAGCCGACCATAAGTTATCT
TTTAGGTCAGCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTTTATCCTGTAACTGTAAAATGAAAGTCTCTA
ATAAGAACCATATCGCACTCAAATAAAAAAACAAACATTGCCGTAGCCTT
TAAACAACTTTGCCGACTTAAAATATAGCTCAGATCGGCATTGCCGACCT
AAAAACAAGCTTAGGTCGGCAAAATTTTGCCGGCCTTCGGCCGGATTTGG
ACGGCACTTACGTGCCGACTTACTTTTACTTGAATTTCGAGGGCTGCATA
ATTTTTAATTATTTTTTATTCAGAAAATCATCAATAAATGCTTGCCCACC
AACCAAATGAGACATCATGTTTATGGTGAGTCATGATAAAGTTTCTTTCA
TTGAAAAAATAAAAGTTAATTACTTTGTAGTCATTCCTGAAATCGCACTT
TTGTGACATTGTTTCGACATTTTTAAGTATGAAAAACTTACTAAAGAGAC
AAAGAAAGGCTGTAACTCTTGATAGAATTTGAATTATTCCAGCGGTTCAC
TGCTTGTTGAAAAGATAAAAACAGGAGTGGAACATTATCAAAAAGAAAAA
TTTCAAAAAATATCCAAAAATGAAAATTGAAAATGAAGAAGAAGAAAATT
AACTTCTTCAATGATTATGCTATAATTATCATTGTTTACACTGAGTGATT
CTTTGATTTCATTTTAAAAATTCATAAAAGTCGTATAGGGTTTTGAGTCG
TTTTTGGACATTATTTTAATAATAAAAAGTTTCCACTTTCATTACTAACC
CTAACCATAACTAATTTTCGCGGGAACTAATTTTCGCTTTTTCCACGGTT
TTTAGGCTAGACCGCCAAAATTAGAAACCGCAAATTACAAATTTGGTGAT
TTTAATTAAAAAATTTGAAAATGAAAGAAATGTATCCAAAATAGGTAAAA
CTGCGAAAATTCATTTCTGTGAAATGCTGTTTTTTTCGAATTTTTTTTTC
GACCGCCAAAATTAGTACCCGAGGTACACTTCTTAAAACAATCAATGATC
ATTTTTGATTTTTTTTTTCGACCGCGAAAATTAGTACCCAAGGTGCACTT
CTTATAAACAATAAATGATAATTTTCTTCTTTTCAGATGCACTGACGAAA
AGTTTCTGTTCAGAACTAACTTGTGAACATTTTTATTCACAATTCGAAGA
TGTAAGTCCCACCTTCTCTCAATAATGTTAGCCATTGTGCTGTGGTGACA
GAATGCTCCACACATTAACGTATAGACCAAAATATCGATTTCAAATAATC
TTTCTTGAAAAAAGGAAAAACAGTTATTTTATTTTCTATTAAAAGACGTC
TTGCTCTTGTGCGATGTCTCTAAGGGGCAAGTAGGGGCAATACATGCTTA
AAAGAAGAACATAACCATAGAAACTTTATTGCTTTTTCAAAAATTAATGG
TTATAAGCAGGTTCTAGGTAGCCCCTAAGAATTTAGGTGGTCCCTAGGAT
TTAGATTGCCCCATACTGGAAAATATTCTAGGTAGCCCCTTAAAGTTTAA
AAACCGAGAAAATGTGAAAATTCAGAAATAGATTATATCGGAATTTTTGA
TTTTTCTAAAAAAGCGATGCATTGTGGGATTGTTTCGGGGGTATTACAAT
AGAATTCCCTCAAGGAATTCTTTAAGAGATCTCTATTGTAATACTCCCGA
AACAATCCCACAATGCATCACTGCTTTAAGAAAAATCAAAAACTCCGATG
AGGTCTATTGTAGATATACTCGTTTCTTGCTTTTAAGCATTCCTCAGTTG
GTTTTTNNNNNNNNNNNNNAAATTTGTCCCGCTAAGGGTCGTAAAATTCC
CAAAATTTTCCTTTGTTTTCTACTTTTTAGTCCCGGTAAGGGTCCAAAGT
TCGAAAGTCGGGCAGCACTCCCCCGTCAGCTCGCAACCCTAGTACCCCCC
TCCCCCCGGGGGTGGTCCCTAGGATTTAGATTGCCCCATACTGGAAAATA
TTCTAGGTAGCCCCTAAAAGTTTAAAAACCGAGAAAATGTGAAAATTCAG
AAATAGATCTTATCGGAATTTTTGATTTTTCTAAAAAAGCGATGCATTGT
GGGATTGTTTCTCGAATATTGCAATAGAATTCCCTCTAGGGATTCCTAAG
AGATCTCTATATTTTAATACTCCCGAAACAATCCCACAATGCATCACTGC
TTTAAGAAAAATCAAAAACTCCGATGAGGTCTATTGTAGATATACTCGTT
TCTTGCTTTTAAGCATTCCTCAGTTGGTTTTTCAAGGATAACACAAATGT
GAATATATTCATATTTTCTTTGATTTTTAGATGAGTTTGTCGACATTGAT
CTTGTTGATTGTCTCAATCCCTTCCATCATCTTCTCCTGCTTTGCTGGTT
GTTGGAAACTCTGTGAATATCTGTATGTATCAATATCAATTATGGATTTT
GTATTTTAACTCATCATAGATTACTTCAAATTCTGCAAGGGTCGGTCAGA
CCTAGAATGCAGAGTCTCTGAAGAAAAAGGGTCTGTAGCACGTGCTGTCG
TTCTCCAAGATGAATTTTGATATGATTAAAGCTGTTACAGAAGAGTGTCT
TAAAGTCTTGATTACTGATCTATCCTCGTATAAGTCTAACTTCCATTCAT
CTATCTCCTGGTTTTCATTCATCCTCTCCTGGTTTTCCTCCACCTTCACA
AAGTCCTAGAAATTCCTTTGATGGAAATCATTTAACGTGTTTCATTTAAA
CAACAACTTATAAATATATTTAATATATTTATAAGTCGTTGTTTTAATCT
CATGTTATTTGCTTACACAGCACTCTCAATCAAAGGAAATAACAACATAC
TCCCTTTTCGGCACCGTACAAGCTTTTTGAGAAATTCTTTTGTTTATAAT
GCTTTGTCAGCATAGAGGCGCGACTCTTTTTTTATCCTAAACAAATTATA
CCTTTAACTGTCTCGTTCATTGTTTAAAGGTCTGAGGAAGACGAAATGTA
CGTTCCAGTATCAGAGCTTGAGAAACGACGCAATGAGCGGCTCCAACGCG
TCCGAGACGCACAAAACGCCGCCATGAAGAACCGAATGGGAAGGTATGGG
AATAGCACTCTTGTTCATCGGAGATACAGATGAGAAAAAAGGTTTGTCAC
GAAAGATCTGATGCGTAACGTTTAGTTGCTCTCTTTTTAAGTTTGCCTTA
TCTTATAACTTCCTTTCTGATGTACCTTTAGTAATTTTTGTAAAGGGCTT
ACTTAACACTTTCCTCCCTTTTATGATTTTCCCTATCGAGTTATATTCCA
GAGTACCCAAACTGGTCTTGTTGGACCTACATGGAGGTCCTATAAATATT
AACCTTCGTCCGTCCGTCCGTCTGTCCGTTCGTCCGTCTGTTACCAGCTT
TTCTCGAGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAATGATGCA
AAATGGTAATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
TTTCATCTTTAGTTTTTTCTGATTTTTTTGCAGAAAGATGCGTATTCGCA
ATGCTCAAAACATGGCTGAGTTCGATTTTTGAGAAATTTTTTTTTCCGGT
TGAATTTGCCGGAAATCGCCGTTTTTGCAGATTTTCATTAGATTTTTTTC
CTTGTATTTCTATGTTTTTGACACAAAAACATTATTGATAACAATGCTCA
CCATCAAGCATGATTCAATTGTCAATAAAACTGATTTTTGCGACCAGAAC
TTTCTATTTGTTTTTTCCCTACAANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTATCAACAA
TCAATGATGAATTTATTGCGTTATGCATTTTCGCTAAACGCTATATTTTC
TGACTGATTTTTTTCTTCTCGCATTGCTATCTAACTTTCATCATCAGGTA
GGTCCATTCAGCATCTAGCTTGTTTGTTCATAACCTCCTCCGACAATCTC
TGAGTAGCGTACTTTTTTGAGAAAAGGATTCATAAGATATGGAGAGATAT
GGGTTTATTAGAATTAAGGTTAAGAGTTTTCAATGCTAATCTACTCACAA
TTACTCTGTAAATTGACTATTAACTACCCACCCGTCATTAAACCCACTGA
TATTTTAAGGGTTGGTGCCTAGATGTGCTCCAAATTTAGACTCTTTGGCC
ACAAAAAAACGGTGTCTAGTGGTCTAGCTTCATGATTGACATATTTGTCA
TTTGTTGGTTGATAATTTCTTGACTGTATTTTAAGAACGTGGTCGACAGA
GAAAAATTAGTGGCCAAATATTCAATGATTAGTGTAATTTGTGTTTTGGA
GAAGAAATTGAAAGTTTGAAAGCCACGAGATCTTTTTGTAAATAATTGTC
AATACAGTGTTGGTGACTTCCTCCTTCTGAGCTGGTATGTTTTGCAACCA
GGTCGTTGAGTACCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043779XLOC_043779Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070303-exon-scaffold_52-1575043694:61282..61383TCONS_00070303-exon-scaffold_52-1575043694:61282..61383Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1575043694:59909..59960TCONS_00070303-exon-scaffold_52-1575043694:59909..59960Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1575043694:59083..59147TCONS_00070303-exon-scaffold_52-1575043694:59083..59147Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1575043694:57862..57953TCONS_00070303-exon-scaffold_52-1575043694:57862..57953Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1575043694:57143..57304TCONS_00070303-exon-scaffold_52-1575043694:57143..57304Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1575043694:54968..55026TCONS_00070303-exon-scaffold_52-1575043694:54968..55026Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1510915933:61282..61383TCONS_00070303-exon-scaffold_52-1510915933:61282..61383Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1510915933:59909..59960TCONS_00070303-exon-scaffold_52-1510915933:59909..59960Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1510915933:59083..59147TCONS_00070303-exon-scaffold_52-1510915933:59083..59147Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1510915933:57862..57953TCONS_00070303-exon-scaffold_52-1510915933:57862..57953Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1510915933:57143..57304TCONS_00070303-exon-scaffold_52-1510915933:57143..57304Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1510915933:54968..55026TCONS_00070303-exon-scaffold_52-1510915933:54968..55026Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1491911889:61282..61383TCONS_00070303-exon-scaffold_52-1491911889:61282..61383Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1491911889:59909..59960TCONS_00070303-exon-scaffold_52-1491911889:59909..59960Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1491911889:59083..59147TCONS_00070303-exon-scaffold_52-1491911889:59083..59147Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1491911889:57862..57953TCONS_00070303-exon-scaffold_52-1491911889:57862..57953Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1491911889:57143..57304TCONS_00070303-exon-scaffold_52-1491911889:57143..57304Clytia hemisphaericaexon
TCONS_00070303-exon-scaffold_52-1491911889:54968..55026TCONS_00070303-exon-scaffold_52-1491911889:54968..55026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:54968..61383 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.70428	2.82539	1.11161	2.10973	6.32125	4.03643	2.02666	3.79929	2.52353	4.72045	5.13016	2.86933	0.00551853	3.57772	0.58265	2.15921	2.07216	1.61279	0	0	1.97173	5.4674	3.96393	2.22928	0.976588	6.07234	0	0	3.48926	3.0481
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070303 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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