TCONS_00070300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070300
Unique NameTCONS_00070300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070300 ID=TCONS_00070300|Name=TCONS_00070300|organism=Clytia hemisphaerica|type=transcript|length=1659bp
TTCTATTCCATTTAAGCTGATGAGGAGCTGAAAGAATTTCAGAGTAACAT
TTGGTGGCATCAAGTCAACTTGGATGTCAGTCGGGCTCATCGTAGGTTCC
CTGTTGGGTCCAGAATGTCAAGGAAACGTGTCTTGCAACAGCAGTTGACT
AACATCATCATGAGAGTTCTTTGCCGCCATCCCGAATTGCATTATTATCA
GGGCTACCACGACATTGCGGTGACGTTGTTGCGTGTGGTGGGAGAAGAAT
TGGCTTTTAGTCTGTTGGAACAACTCTCAACTAATCACATCAGAGATTTT
ATGGATAAAAATATGAATCGGACGAATCGCATGTTGTCGCTCTTTTATGC
TGTCTTGAGTAAAGTGGACCAACAATTAGAACAATTTTTACTGTGCTCTG
ATGTGGGTACCATCTTTGCTTTGAGTTGGTTGATCACGTGGTTTGGGCAT
GACGTCAACAGTTTTGAAACTATCGTTCGATTGTGCGATTTCTTTTTGGC
CACACATCCTGTCATGCCCGTTTATGTTTCAGTCGTGCTTGTAAGAAATC
ATAAAACACAGGTGCTACAACAAGAATGTGATATTTGAACATCGAAgata
ttgatgacgtcatcaagcaAGCACATGATTTGTACCAACAGCATCCACCG
ACAAGCTTGAGATCAGAAGTCcgaaaatatttaaaagaaagCGATTCAAT
TTCTCACCATGCTGAACTACTGTACCGCTCCTACAATCAAAAACCGGATC
GAATATTACGAAGACGAAAGAAATACGGCCTTTTGTTTACCGACACGTCA
TTAATCTCCTCAACCGAGGTCAGAGATACCGATGGGAAGCAGTTAGCTTT
GATTGGCAGCAACCAGACGACGAATCCTCTTGTCAAAGTTGCTGTTTGGA
CAATGACTGTGTCAATGGGAGTTATGACGTTCCTGGTTTTAAACACCTCC
AAATACTGGatgtaaattaaaattatcTTCGAAAAGAAGGGATTGTGAAT
GGATTGCTGATTCCATGAAAAAATGCATTGCCACTTGCCTTTTCCTTACT
TAATTGGCCATTCAAAATAACACCATTTTTCTCCGGTAATTTTGATGACG
GAGGTACTGATTTAATGGACATTTTCATATTGCCTCACCCTTATGAATTG
AATTCGAAGATTATATATTTGATCAATGAACGCCCTTCCAAGTTGGACGT
CATTTTGCACAAACTTATGTTATCGTTCCTCAGTTTATTTTAACAAGGCC
TGGTAATGACAGAGTTtatcttttgtatttttccaCGAGCAAATGGTTTG
TTCGAGAACTAAAAAATTAAGTGGCTATTGGAAAATGTTTCTTATCGGCA
ATTTTGTAGAACTAAACAAAAAGAACATGATTCAAAGAGTTGGCTATTGG
CTTAACTATTTAGGCTCTGCTCTGCTAAGCCTAATCTTTTGATCTTGAAG
ATGTCATCTCCTACTGGATTGCAATGtatttttgtggaatttcctttgtt
ctgtttttgtttcGTTAGTTTGGTTTGGATTTAATAAATTATTGCAAggg
atctttattttttttgaaaaatattgtaaataaataCAGTGAACttttta
attcgaacctctattattcgaatctttctataatttgaactcAAATATTG
GCCCCCTGG
Run BLAST on NCBI

protein sequence of TCONS_00070300-protein

>TCONS_00070300-protein ID=TCONS_00070300-protein|Name=TCONS_00070300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSRKRVLQQQLTNIIMRVLCRHPELHYYQGYHDIAVTLLRVVGEELAFSL
LEQLSTNHIRDFMDKNMNRTNRMLSLFYAVLSKVDQQLEQFLLCSDVGTI
FALSWLITWFGHDVNSFETIVRLCDFFLATHPVMPVYVSVVLVRNHKTQV
LQQECDI
Run BLAST on NCBI

transcript from alignment at scaffold_52:190755..196941+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070300 ID=TCONS_00070300|Name=TCONS_00070300|organism=Clytia hemisphaerica|type=transcript|length=6187bp|location=Sequence derived from alignment at scaffold_52:190755..196941+ (Clytia hemisphaerica)
TTCTATTCCATTTAAGCTGATGAGGAGCTGAAAGAATTTCAGAGTAACAT
TTGGTGGCATCAAGTCAACTTGGATGTCAGTCGGGCTCATCGTAGGTTCC
CTGTTGGTAAGACATTTAATACATCCAACCCATATAACTTCACTAAATCC
AACCCATTCAACCCATATAACTTCATTAAACCACAACTAAATTTCCCTCG
CTTTGAAATGGCTTTAAACATCGTCACAATATAGGCTTTTTCTGAGAATC
TTCCAATCCTCGCTTTGAAAATCTGCCTTAGTCTTATTCCTTACCTCCTT
TTATAAAGCCTCTTCCTTACACATCCATTAAATGGAATTTTCGGGGAGGC
TCTGCCCCCTTAAGAAAAGTGCTTTGGTACACTTTGCCAAGGCATCCTGT
ATAAAATGATTCTACTTACGGTCAttgatttcattatttttcaataattg
ttttattatcGTACACACGATGGTAGTGAAAAGTCTCAACTCACTCTCAT
TCGAATCTCTTTTATTCAAATTAGATTGGTCCCGTCCAGGCCCGTAGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggggcacag
gggcatttgccccccccccaaaaaaaaatattttcaaaagttggtagctt
tgaaaaatcttgtatTACTGGCTTCATGTTGAACATAATCCTTCCAGCAA
TCTACTTAGACaccttaaaaattgcaaaaaattttcCCTTAGACCAAACC
GTGGCTGACCCTCGGTTTATATTTCTCACTTTGCCCCCTctaaatgaaaa
tgcttcctacgggcCTGCCCTCAGTTCCCTTTTTGAGTTTAAATACAAGA
TGATTTTAAAATCACCCAATACTTTTAATCGGAACAGCAATGACTTAAGC
ATAAGATTGAACTTTCCTGCTCTACCGAAATGCTAGAATGCAAGAGACTG
CTATTTTTTTCGTGACatcatttttcgactttttttgtAACTATTGCTGG
ATTTTCTCAATGTATGCTTATGCACTGAAGCCATTCGTGACATTGTGTAT
TAACAGTGGAGTCTTTATAACTCTATAACTCCATAACTGACACgggaaaa
caaatttgttcgacttaaaggtttataaggcattattgattaaaaaggga
caagaaaacttgttcgagttaaggagatattcgtGTTGAAGAGACTAAAT
GTAGTACAAATGTTGAACAACTCTCAAAGtgatcaaaatttgatttctaG
GGTCCAGAATGTCAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATC
ATCATGAGAGTTCTTTGCCGCCATCCCGAATTGCATTATTATCAGGTACG
TAGAGATTTTTCGTGTTTTGTAAATGACGTAATTTCAGCCATTATGAAAA
CTGTAAAGGTGATCctttacgcaaatcgaacgttttcttCCATAACGGTG
GGTATTACGTAACTTAGACAAACTGATTCTTTACTACAGCGTGACATCAG
AACTGGATGAAAACGGAATACTTTGGTAGAACTCGCTAAAGAGTAATTGT
GTGTTTTCagtaaataaaacattttagtAAGTTAAACAATAGTGCTCGTT
TTCCTTGAAATTGATTGATTCTTATTGGGTGAAAACACATCACGTGACTT
TTCCTGGTGAAGAATCAAATAAAGACACGCCCTCGTTTTAATGCAAGATT
TTAAACATATAATGGTAAAAGGGAAATTTTCTCACAGAATTATTTCTAAC
TGAATAACATTACGTGAACATTAAAAAAACTTGACATCTCTttgtcaaag
aaaatattttctttgctttttttcatAGGGCTACCACGACATTGCGGTGA
CGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTGTTGGAACAA
CTCTCAACTAATCACATCAGGTTTGTTACTGGACCGGACTGGGCCTCCTT
AGAAAGactaaaatttgacaaaaaagtgACCCTCAGTGAGACAATTcttg
aaagatatttccacTCTCAAAATCACATAAGTCATTATGATAGCTTTCGT
AATCTTGATAAGACCCAAAATCTAAATAATATTAATAGCTAGACATTAAA
ATACTAAACTTAAAATATTAATACTCTtagttgaaaaaatatttgggaat
tttctttgtttcttcttGGCAGAGATTTTATGGATAAAAATATGAATCGG
ACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAGTGGACCA
ACAATTAGAACAATTTTTACTGTGGtaagttcaaaatttctttatataTT
TTCCTGTTCTTTGTACTATATAGTTTTTCACTTTGAATTgggtttttata
aatattttagcTGCAGTCCAATATTGTTAGATACACCGTTTCTTCTTGTA
AGAATGGCCCAAAAACAATGAGGCTATAAAGctccaaaaataagaacact
ttaagaacaAGGCTGGCCATAAAATGACTGAATATTATCGAATCTAATAA
CATGacgggagaagaatctctcgaaacgtagccaaacgtaaatctcgtga
tccaagccacgataaacctCCAATATACTAATAACATAGATAcacgcttt
ttggacctaccccggtggggtgaaggtcctataaattaacccgtgttcgt
tagttcgttcgttagttaccaacttttctcgagattgNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaactttataaaa
tgtaaaatcataagttctgtttcatagaggtcaatagacctgcgaaatat
attgctataaaataaaaaaaaaaaataatgaacgtTGTTATTAGCAGCTG
ATCGACTGAGTGTTTTGCTTATGTTTACGTGGCGGTCTaccattttgatg
aaaatgtccCTCCCGCTAAGTGAGTGCGCGTGAGCGGAGCGGAACTTGAA
AGCCGGTAATGTaaaggttttttatttttacataagtgttcccgtttcat
atcagtcacatattttatatcagggCACTATTGCTATATTATGCTTTATA
TAAGCAAATATTTATATATAGTGTTTTTGTTTTCCTccttctgaccaatc
ttgctccacattcgtgtcaattcaatgtgaaaaagcttgtgaattaaaat
taacgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaag
cctgaaagtttcaaaaaaatgaagaacagATTAACCTgaaccaaaattta
ctggttcttatgaaGAATATGCGTGTAAAGAAGAAATTGTTTTCTATTGT
TGCTCTTTCCCTACCTTAGCTCTGATGTGGGTACCATCTTTGCTTTGAGT
TGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTTTGAAACTATCGT
TCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCATGCCCGTTTATG
TTTCAGTCGTGGTATGATATAAAAAAgcaatttcatgtttttattttatt
cccaTTAAATACACCTATCAACATATAAAATGTGAGGAGACTATGTTTAT
TAGTAAGATATGACGTCTAAATGCCTGAAATCGTTATATTGACATTCTTA
CAGACATAGAATTTTGACGTCACTTCCTCGTAAATTCCTCTACCTTCCTT
TTGTCTCTTTATAGACAAGAATTTCTATATAAAGACTATGTTATTATCAA
ACCTTCtcatacttttttgaaaaaattcctctACAAGGAaggattttcca
ttttttggtGAATTTACCTGAAATCTGGAGATTACGAGATCTTCGAACAT
TCTTTTGTATCTAACTGTAGGGAAGAAGGTGTaaTAAGAATAAGAACAGG
GGGTCAGTACTCTGGTCTGGAGAAAAGCCATTAAAGTTAAAATCATGGGG
AGAGGTCATAATTATGGTAATGATAATTTGTAATAATGATCAAGTCCTTT
CCACATTTTTCGTATTTTCAGCTTGTAAGAAATCATAAAACACAGGTGCT
ACAACAAGAATGTGATATTTGAACATCGAAgatattgatgacgtcatcaa
gcaAGCACATGATTTGTACCAACAGCATCCACCGACAAGCTTGAGATCAG
AAGTCcgaaaatatttaaaagaaagGTATCAATATTGTTTTCCTTTGAAC
TTTTTTGAAACGCTTCAaacaagttttttatttttagggaACGTTCATAT
GGAGGCGGGCGTGCCTTGTTAAAAGGGCTGGCTCACTTAAGTgagattga
atttttttcggtgtgtgtaatttacgatgcgcgatccaacgattcacgat
gcacgattcaCGATCTATGCATATATTGTGTTTTTGTGTTCATATGAGAG
GTGAGCCaaagtttttcgtcaaaacagTTGCAATTGTAACTTCTTCAAGG
TCGTTTTTACATCTCAATGTCCGCTCATATGAGAAATTTCAATCCCACCT
GAGAGAGAGATACCACTCAAATCAAGTAAGATCCCAACTGGCCTTGTTCG
CAAATGAACACGATTCATTCACGGGAAAATACAAACAAGAGTGAGATCTC
TAACGGCCAACCCGCCTCCATATGAACAGCCCCTTAAAGAGTAAGTTAAT
TGGCTTGCTTGTTCTATTCTTCATTCGTTTTATACTTGAAGACGGATGGG
CGAACAAACTGTGAATTTTGTCCGACTGTTATGAGTTTTTTTGGGTATTG
GCTCATTagctttttctgttttgtttttttgtataaaagatgcaaaatgg
cagtGTCCAAATGTGATGGTCCTcgattttccttagaaaatttttttttt
cagaaattctgGAAATATACCTTTTTTTAGggattttaccgaaattttat
tgttagtttttctgatttttttgcacaaagatgtataTTAATATGTATAG
TCTTCTTAGTTTACCTAATTCCTTCTATAGTTTAGTAAAAGGTTCTTTTT
ACATAACTATTGGGTGTTTCTTTTGTAAGAAGCAAGGAGGAGACTTTTTC
AACAACTTTTCCTTTACCTTCATTACCTTGTACAATACACAATTTCTATG
ATTTCTAACTTCTTTGTAGCGATTCAATTTCTCACCATGCTGAACTACTG
TACCGCTCCTACAATCAAAAACCGGATCGAATATTACGAAGACGAAAGAA
ATACGGCCTTTTGTTTACCGACACGTCATTAATCTCCTCAACCGAGGTCA
GAGATACCGATGGGAAGCAGTTAGCTTTGATTGGCAGCAACCAGACGACG
AATCCTCTTGTCAAAGTTGCTGTTTGGACAATGACTGTGTCAATGGGAGT
TATGACGTTCCTGGTTTTAAACACCTCCAAATACTGGatgtaaattaaaa
ttatcTTCGAAAAGAAGGGATTGTGAATGGATTGCTGATTCCATGAAAAA
ATGCATTGCCACTTGCCTTTTCCTTACTTAATTGGCCATTCAAAATAACA
CCATTTTTCTCCGGTAATTTTGATGACGGAGGTACTGATTTAATGGACAT
TTTCATATTGCCTCACCCTTATGAATTGAATTCGAAGATTATATATTTGA
TCAATGAACGCCCTTCCAAGTTGGACGTCATTTTGCACAAACTTATGTTA
TCGTTCCTCAGTTTATTTTAACAAGGCCTGGTAATGACAGAGTTtatctt
ttgtatttttccaCGAGCAAATGGTTTGTTCGAGAACTAAAAAATTAAGT
GGCTATTGGAAAATGTTTCTTATCGGCAATTTTGTAGAACTAAACAAAAA
GAACATGATTCAAAGAGTTGGCTATTGGCTTAACTATTTAGGCTCTGCTC
TGCTAAGCCTAATCTTTTGATCTTGAAGATGTCATCTCCTACTGGATTGC
AATGtatttttgtggaatttcctttgttctgtttttgtttcGTTAGTTTG
GTTTGGATTTAATAAATTATTGCAAgggatctttattttttttgaaaaat
attgtaaataaataCAGTGAACtttttaattcgaacctctattattcgaa
tctttctataatttgaactcAAATATTGGCCCCCTGG

Coding sequence (CDS) from alignment at scaffold_52:190755..196941+

>TCONS_00070300 ID=TCONS_00070300|Name=TCONS_00070300|organism=Clytia hemisphaerica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_52:190755..196941+ (Clytia hemisphaerica)
ATGTCAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATCATCATGAG
AGTTCTTTGCCGCCATCCCGAATTGCATTATTATCAGGGCTACCACGACA
TTGCGGTGACGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTG
TTGGAACAACTCTCAACTAATCACATCAGAGATTTTATGGATAAAAATAT
GAATCGGACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAG
TGGACCAACAATTAGAACAATTTTTACTGTGCTCTGATGTGGGTACCATC
TTTGCTTTGAGTTGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTT
TGAAACTATCGTTCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCA
TGCCCGTTTATGTTTCAGTCGTGCTTGTAAGAAATCATAAAACACAGGTG
CTACAACAAGAATGTGATATTTGAATGTCAAGGAAACGTGTCTTGCAACA
GCAGTTGACTAACATCATCATGAGAGTTCTTTGCCGCCATCCCGAATTGC
ATTATTATCAGGGCTACCACGACATTGCGGTGACGTTGTTGCGTGTGGTG
GGAGAAGAATTGGCTTTTAGTCTGTTGGAACAACTCTCAACTAATCACAT
CAGAGATTTTATGGATAAAAATATGAATCGGACGAATCGCATGTTGTCGC
TCTTTTATGCTGTCTTGAGTAAAGTGGACCAACAATTAGAACAATTTTTA
CTGTGCTCTGATGTGGGTACCATCTTTGCTTTGAGTTGGTTGATCACGTG
GTTTGGGCATGACGTCAACAGTTTTGAAACTATCGTTCGATTGTGCGATT
TCTTTTTGGCCACACATCCTGTCATGCCCGTTTATGTTTCAGTCGTGCTT
GTAAGAAATCATAAAACACAGGTGCTACAACAAGAATGTGATATTTGAAT
GTCAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATCATCATGAGAG
TTCTTTGCCGCCATCCCGAATTGCATTATTATCAGGGCTACCACGACATT
GCGGTGACGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTGTT
GGAACAACTCTCAACTAATCACATCAGAGATTTTATGGATAAAAATATGA
ATCGGACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAGTG
GACCAACAATTAGAACAATTTTTACTGTGCTCTGATGTGGGTACCATCTT
TGCTTTGAGTTGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTTTG
AAACTATCGTTCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCATG
CCCGTTTATGTTTCAGTCGTGCTTGTAAGAAATCATAAAACACAGGTGCT
ACAACAAGAATGTGATATTTGAATGTCAAGGAAACGTGTCTTGCAACAGC
AGTTGACTAACATCATCATGAGAGTTCTTTGCCGCCATCCCGAATTGCAT
TATTATCAGGGCTACCACGACATTGCGGTGACGTTGTTGCGTGTGGTGGG
AGAAGAATTGGCTTTTAGTCTGTTGGAACAACTCTCAACTAATCACATCA
GAGATTTTATGGATAAAAATATGAATCGGACGAATCGCATGTTGTCGCTC
TTTTATGCTGTCTTGAGTAAAGTGGACCAACAATTAGAACAATTTTTACT
GTGCTCTGATGTGGGTACCATCTTTGCTTTGAGTTGGTTGATCACGTGGT
TTGGGCATGACGTCAACAGTTTTGAAACTATCGTTCGATTGTGCGATTTC
TTTTTGGCCACACATCCTGTCATGCCCGTTTATGTTTCAGTCGTGCTTGT
AAGAAATCATAAAACACAGGTGCTACAACAAGAATGTGATATTTGAATGT
CAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATCATCATGAGAGTT
CTTTGCCGCCATCCCGAATTGCATTATTATCAGGGCTACCACGACATTGC
GGTGACGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTGTTGG
AACAACTCTCAACTAATCACATCAGAGATTTTATGGATAAAAATATGAAT
CGGACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAGTGGA
CCAACAATTAGAACAATTTTTACTGTGCTCTGATGTGGGTACCATCTTTG
CTTTGAGTTGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTTTGAA
ACTATCGTTCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCATGCC
CGTTTATGTTTCAGTCGTGCTTGTAAGAAATCATAAAACACAGGTGCTAC
AACAAGAATGTGATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043778XLOC_043778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070300-exon-scaffold_52-1491911889:190755..190860TCONS_00070300-exon-scaffold_52-1491911889:190755..190860Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:190755..190860TCONS_00070300-exon-scaffold_52-1510915933:190755..190860Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:190755..190860TCONS_00070300-exon-scaffold_52-1575043694:190755..190860Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:192105..192199TCONS_00070300-exon-scaffold_52-1491911889:192105..192199Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:192105..192199TCONS_00070300-exon-scaffold_52-1510915933:192105..192199Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:192105..192199TCONS_00070300-exon-scaffold_52-1575043694:192105..192199Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:192683..192774TCONS_00070300-exon-scaffold_52-1491911889:192683..192774Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:192683..192774TCONS_00070300-exon-scaffold_52-1510915933:192683..192774Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:192683..192774TCONS_00070300-exon-scaffold_52-1575043694:192683..192774Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:193027..193128TCONS_00070300-exon-scaffold_52-1491911889:193027..193128Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:193027..193128TCONS_00070300-exon-scaffold_52-1510915933:193027..193128Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:193027..193128TCONS_00070300-exon-scaffold_52-1575043694:193027..193128Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:194224..194365TCONS_00070300-exon-scaffold_52-1491911889:194224..194365Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:194224..194365TCONS_00070300-exon-scaffold_52-1510915933:194224..194365Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:194224..194365TCONS_00070300-exon-scaffold_52-1575043694:194224..194365Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:194876..195029TCONS_00070300-exon-scaffold_52-1491911889:194876..195029Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:194876..195029TCONS_00070300-exon-scaffold_52-1510915933:194876..195029Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:194876..195029TCONS_00070300-exon-scaffold_52-1575043694:194876..195029Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:195974..196941TCONS_00070300-exon-scaffold_52-1491911889:195974..196941Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:195974..196941TCONS_00070300-exon-scaffold_52-1510915933:195974..196941Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:195974..196941TCONS_00070300-exon-scaffold_52-1575043694:195974..196941Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070300-proteinTCONS_00070300-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:190755..196941 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.1367	31.0774	41.1184	43.6521	9.32011	7.13824	13.82	14.2789	10.1779	10.9251	9.51068	6.48724	11.06	9.63154	17.7793	20.71	23.3079	22.7587	14.0122	23.0219	17.0043	17.5008	34.6951	37.5679	12.1727	12.6636	23.8801	17.013	28.2956	29.0665
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
Blast
[Close]
BLAST of TCONS_00070300 vs. Swiss-Prot (Human)
Match: TBC20 (TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.254e-45
Identity = 92/177 (51.98%), Postives = 129/177 (72.88%), Query Frame = 1 
Query:   55 WHQVNLDVSRAHRRFPVGSRMSRKRVLQQQLTNIIMRVLCRHPELHYYQGYHDIAVTLLRVVGEELAFSLLEQLSTNHIRDFMDKNMNRTNRMLSLFYAVLSKVDQQLEQFLLCSDVGTIFALSWLITWFGHDVNSFETIVRLCDFFLATHPXXXXXXXXXXXRNHKTQVLQQECDI 585
            + QV LDV R+ RRFP G    ++  LQ++L +II+ +L R+P+LHYYQGYHDI VT L VVGE LA SL+E+LST+H+RDFMD  M+ T  +L+    ++ +V+ +L  F+  ++VGTIFALSWLITWFGH ++ F  +VRL DFFLA HP+MP+Y + V+V   + +VL  +CD+
Sbjct:   96 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDM 272
The following BLAST results are available for this feature:
BLAST of TCONS_00070300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBC201.254e-4551.98TBC1 domain family member 20 OS=Homo sapiens GN=TB... [more]
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