TCONS_00070300 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070300
Unique NameTCONS_00070300
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1659

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070300 ID=TCONS_00070300|Name=TCONS_00070300|organism=Clytia hemisphaerica|type=transcript|length=1659bp
TTCTATTCCATTTAAGCTGATGAGGAGCTGAAAGAATTTCAGAGTAACAT
TTGGTGGCATCAAGTCAACTTGGATGTCAGTCGGGCTCATCGTAGGTTCC
CTGTTGGGTCCAGAATGTCAAGGAAACGTGTCTTGCAACAGCAGTTGACT
AACATCATCATGAGAGTTCTTTGCCGCCATCCCGAATTGCATTATTATCA
GGGCTACCACGACATTGCGGTGACGTTGTTGCGTGTGGTGGGAGAAGAAT
TGGCTTTTAGTCTGTTGGAACAACTCTCAACTAATCACATCAGAGATTTT
ATGGATAAAAATATGAATCGGACGAATCGCATGTTGTCGCTCTTTTATGC
TGTCTTGAGTAAAGTGGACCAACAATTAGAACAATTTTTACTGTGCTCTG
ATGTGGGTACCATCTTTGCTTTGAGTTGGTTGATCACGTGGTTTGGGCAT
GACGTCAACAGTTTTGAAACTATCGTTCGATTGTGCGATTTCTTTTTGGC
CACACATCCTGTCATGCCCGTTTATGTTTCAGTCGTGCTTGTAAGAAATC
ATAAAACACAGGTGCTACAACAAGAATGTGATATTTGAACATCGAAgata
ttgatgacgtcatcaagcaAGCACATGATTTGTACCAACAGCATCCACCG
ACAAGCTTGAGATCAGAAGTCcgaaaatatttaaaagaaagCGATTCAAT
TTCTCACCATGCTGAACTACTGTACCGCTCCTACAATCAAAAACCGGATC
GAATATTACGAAGACGAAAGAAATACGGCCTTTTGTTTACCGACACGTCA
TTAATCTCCTCAACCGAGGTCAGAGATACCGATGGGAAGCAGTTAGCTTT
GATTGGCAGCAACCAGACGACGAATCCTCTTGTCAAAGTTGCTGTTTGGA
CAATGACTGTGTCAATGGGAGTTATGACGTTCCTGGTTTTAAACACCTCC
AAATACTGGatgtaaattaaaattatcTTCGAAAAGAAGGGATTGTGAAT
GGATTGCTGATTCCATGAAAAAATGCATTGCCACTTGCCTTTTCCTTACT
TAATTGGCCATTCAAAATAACACCATTTTTCTCCGGTAATTTTGATGACG
GAGGTACTGATTTAATGGACATTTTCATATTGCCTCACCCTTATGAATTG
AATTCGAAGATTATATATTTGATCAATGAACGCCCTTCCAAGTTGGACGT
CATTTTGCACAAACTTATGTTATCGTTCCTCAGTTTATTTTAACAAGGCC
TGGTAATGACAGAGTTtatcttttgtatttttccaCGAGCAAATGGTTTG
TTCGAGAACTAAAAAATTAAGTGGCTATTGGAAAATGTTTCTTATCGGCA
ATTTTGTAGAACTAAACAAAAAGAACATGATTCAAAGAGTTGGCTATTGG
CTTAACTATTTAGGCTCTGCTCTGCTAAGCCTAATCTTTTGATCTTGAAG
ATGTCATCTCCTACTGGATTGCAATGtatttttgtggaatttcctttgtt
ctgtttttgtttcGTTAGTTTGGTTTGGATTTAATAAATTATTGCAAggg
atctttattttttttgaaaaatattgtaaataaataCAGTGAACttttta
attcgaacctctattattcgaatctttctataatttgaactcAAATATTG
GCCCCCTGG
Run BLAST on NCBI

protein sequence of TCONS_00070300-protein

>TCONS_00070300-protein ID=TCONS_00070300-protein|Name=TCONS_00070300-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
MSRKRVLQQQLTNIIMRVLCRHPELHYYQGYHDIAVTLLRVVGEELAFSL
LEQLSTNHIRDFMDKNMNRTNRMLSLFYAVLSKVDQQLEQFLLCSDVGTI
FALSWLITWFGHDVNSFETIVRLCDFFLATHPVMPVYVSVVLVRNHKTQV
LQQECDI
Run BLAST on NCBI

transcript from alignment at scaffold_52:190755..196941+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070300 ID=TCONS_00070300|Name=TCONS_00070300|organism=Clytia hemisphaerica|type=transcript|length=6187bp|location=Sequence derived from alignment at scaffold_52:190755..196941+ (Clytia hemisphaerica)
TTCTATTCCATTTAAGCTGATGAGGAGCTGAAAGAATTTCAGAGTAACAT TTGGTGGCATCAAGTCAACTTGGATGTCAGTCGGGCTCATCGTAGGTTCC CTGTTGGTAAGACATTTAATACATCCAACCCATATAACTTCACTAAATCC AACCCATTCAACCCATATAACTTCATTAAACCACAACTAAATTTCCCTCG CTTTGAAATGGCTTTAAACATCGTCACAATATAGGCTTTTTCTGAGAATC TTCCAATCCTCGCTTTGAAAATCTGCCTTAGTCTTATTCCTTACCTCCTT TTATAAAGCCTCTTCCTTACACATCCATTAAATGGAATTTTCGGGGAGGC TCTGCCCCCTTAAGAAAAGTGCTTTGGTACACTTTGCCAAGGCATCCTGT ATAAAATGATTCTACTTACGGTCAttgatttcattatttttcaataattg ttttattatcGTACACACGATGGTAGTGAAAAGTCTCAACTCACTCTCAT TCGAATCTCTTTTATTCAAATTAGATTGGTCCCGTCCAGGCCCGTAGNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNggggggggggggggggcacag gggcatttgccccccccccaaaaaaaaatattttcaaaagttggtagctt tgaaaaatcttgtatTACTGGCTTCATGTTGAACATAATCCTTCCAGCAA TCTACTTAGACaccttaaaaattgcaaaaaattttcCCTTAGACCAAACC GTGGCTGACCCTCGGTTTATATTTCTCACTTTGCCCCCTctaaatgaaaa tgcttcctacgggcCTGCCCTCAGTTCCCTTTTTGAGTTTAAATACAAGA TGATTTTAAAATCACCCAATACTTTTAATCGGAACAGCAATGACTTAAGC ATAAGATTGAACTTTCCTGCTCTACCGAAATGCTAGAATGCAAGAGACTG CTATTTTTTTCGTGACatcatttttcgactttttttgtAACTATTGCTGG ATTTTCTCAATGTATGCTTATGCACTGAAGCCATTCGTGACATTGTGTAT TAACAGTGGAGTCTTTATAACTCTATAACTCCATAACTGACACgggaaaa caaatttgttcgacttaaaggtttataaggcattattgattaaaaaggga caagaaaacttgttcgagttaaggagatattcgtGTTGAAGAGACTAAAT GTAGTACAAATGTTGAACAACTCTCAAAGtgatcaaaatttgatttctaG GGTCCAGAATGTCAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATC ATCATGAGAGTTCTTTGCCGCCATCCCGAATTGCATTATTATCAGGTACG TAGAGATTTTTCGTGTTTTGTAAATGACGTAATTTCAGCCATTATGAAAA CTGTAAAGGTGATCctttacgcaaatcgaacgttttcttCCATAACGGTG GGTATTACGTAACTTAGACAAACTGATTCTTTACTACAGCGTGACATCAG AACTGGATGAAAACGGAATACTTTGGTAGAACTCGCTAAAGAGTAATTGT GTGTTTTCagtaaataaaacattttagtAAGTTAAACAATAGTGCTCGTT TTCCTTGAAATTGATTGATTCTTATTGGGTGAAAACACATCACGTGACTT TTCCTGGTGAAGAATCAAATAAAGACACGCCCTCGTTTTAATGCAAGATT TTAAACATATAATGGTAAAAGGGAAATTTTCTCACAGAATTATTTCTAAC TGAATAACATTACGTGAACATTAAAAAAACTTGACATCTCTttgtcaaag aaaatattttctttgctttttttcatAGGGCTACCACGACATTGCGGTGA CGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTGTTGGAACAA CTCTCAACTAATCACATCAGGTTTGTTACTGGACCGGACTGGGCCTCCTT AGAAAGactaaaatttgacaaaaaagtgACCCTCAGTGAGACAATTcttg aaagatatttccacTCTCAAAATCACATAAGTCATTATGATAGCTTTCGT AATCTTGATAAGACCCAAAATCTAAATAATATTAATAGCTAGACATTAAA ATACTAAACTTAAAATATTAATACTCTtagttgaaaaaatatttgggaat tttctttgtttcttcttGGCAGAGATTTTATGGATAAAAATATGAATCGG ACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAGTGGACCA ACAATTAGAACAATTTTTACTGTGGtaagttcaaaatttctttatataTT TTCCTGTTCTTTGTACTATATAGTTTTTCACTTTGAATTgggtttttata aatattttagcTGCAGTCCAATATTGTTAGATACACCGTTTCTTCTTGTA AGAATGGCCCAAAAACAATGAGGCTATAAAGctccaaaaataagaacact ttaagaacaAGGCTGGCCATAAAATGACTGAATATTATCGAATCTAATAA CATGacgggagaagaatctctcgaaacgtagccaaacgtaaatctcgtga tccaagccacgataaacctCCAATATACTAATAACATAGATAcacgcttt ttggacctaccccggtggggtgaaggtcctataaattaacccgtgttcgt tagttcgttcgttagttaccaacttttctcgagattgNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaactttataaaa tgtaaaatcataagttctgtttcatagaggtcaatagacctgcgaaatat attgctataaaataaaaaaaaaaaataatgaacgtTGTTATTAGCAGCTG ATCGACTGAGTGTTTTGCTTATGTTTACGTGGCGGTCTaccattttgatg aaaatgtccCTCCCGCTAAGTGAGTGCGCGTGAGCGGAGCGGAACTTGAA AGCCGGTAATGTaaaggttttttatttttacataagtgttcccgtttcat atcagtcacatattttatatcagggCACTATTGCTATATTATGCTTTATA TAAGCAAATATTTATATATAGTGTTTTTGTTTTCCTccttctgaccaatc ttgctccacattcgtgtcaattcaatgtgaaaaagcttgtgaattaaaat taacgagtaagcaaacgatatcactcttatttaaaaacaaaacctttaag cctgaaagtttcaaaaaaatgaagaacagATTAACCTgaaccaaaattta ctggttcttatgaaGAATATGCGTGTAAAGAAGAAATTGTTTTCTATTGT TGCTCTTTCCCTACCTTAGCTCTGATGTGGGTACCATCTTTGCTTTGAGT TGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTTTGAAACTATCGT TCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCATGCCCGTTTATG TTTCAGTCGTGGTATGATATAAAAAAgcaatttcatgtttttattttatt cccaTTAAATACACCTATCAACATATAAAATGTGAGGAGACTATGTTTAT TAGTAAGATATGACGTCTAAATGCCTGAAATCGTTATATTGACATTCTTA CAGACATAGAATTTTGACGTCACTTCCTCGTAAATTCCTCTACCTTCCTT TTGTCTCTTTATAGACAAGAATTTCTATATAAAGACTATGTTATTATCAA ACCTTCtcatacttttttgaaaaaattcctctACAAGGAaggattttcca ttttttggtGAATTTACCTGAAATCTGGAGATTACGAGATCTTCGAACAT TCTTTTGTATCTAACTGTAGGGAAGAAGGTGTaaTAAGAATAAGAACAGG GGGTCAGTACTCTGGTCTGGAGAAAAGCCATTAAAGTTAAAATCATGGGG AGAGGTCATAATTATGGTAATGATAATTTGTAATAATGATCAAGTCCTTT CCACATTTTTCGTATTTTCAGCTTGTAAGAAATCATAAAACACAGGTGCT ACAACAAGAATGTGATATTTGAACATCGAAgatattgatgacgtcatcaa gcaAGCACATGATTTGTACCAACAGCATCCACCGACAAGCTTGAGATCAG AAGTCcgaaaatatttaaaagaaagGTATCAATATTGTTTTCCTTTGAAC TTTTTTGAAACGCTTCAaacaagttttttatttttagggaACGTTCATAT GGAGGCGGGCGTGCCTTGTTAAAAGGGCTGGCTCACTTAAGTgagattga atttttttcggtgtgtgtaatttacgatgcgcgatccaacgattcacgat gcacgattcaCGATCTATGCATATATTGTGTTTTTGTGTTCATATGAGAG GTGAGCCaaagtttttcgtcaaaacagTTGCAATTGTAACTTCTTCAAGG TCGTTTTTACATCTCAATGTCCGCTCATATGAGAAATTTCAATCCCACCT GAGAGAGAGATACCACTCAAATCAAGTAAGATCCCAACTGGCCTTGTTCG CAAATGAACACGATTCATTCACGGGAAAATACAAACAAGAGTGAGATCTC TAACGGCCAACCCGCCTCCATATGAACAGCCCCTTAAAGAGTAAGTTAAT TGGCTTGCTTGTTCTATTCTTCATTCGTTTTATACTTGAAGACGGATGGG CGAACAAACTGTGAATTTTGTCCGACTGTTATGAGTTTTTTTGGGTATTG GCTCATTagctttttctgttttgtttttttgtataaaagatgcaaaatgg cagtGTCCAAATGTGATGGTCCTcgattttccttagaaaatttttttttt cagaaattctgGAAATATACCTTTTTTTAGggattttaccgaaattttat tgttagtttttctgatttttttgcacaaagatgtataTTAATATGTATAG TCTTCTTAGTTTACCTAATTCCTTCTATAGTTTAGTAAAAGGTTCTTTTT ACATAACTATTGGGTGTTTCTTTTGTAAGAAGCAAGGAGGAGACTTTTTC AACAACTTTTCCTTTACCTTCATTACCTTGTACAATACACAATTTCTATG ATTTCTAACTTCTTTGTAGCGATTCAATTTCTCACCATGCTGAACTACTG TACCGCTCCTACAATCAAAAACCGGATCGAATATTACGAAGACGAAAGAA ATACGGCCTTTTGTTTACCGACACGTCATTAATCTCCTCAACCGAGGTCA GAGATACCGATGGGAAGCAGTTAGCTTTGATTGGCAGCAACCAGACGACG AATCCTCTTGTCAAAGTTGCTGTTTGGACAATGACTGTGTCAATGGGAGT TATGACGTTCCTGGTTTTAAACACCTCCAAATACTGGatgtaaattaaaa ttatcTTCGAAAAGAAGGGATTGTGAATGGATTGCTGATTCCATGAAAAA ATGCATTGCCACTTGCCTTTTCCTTACTTAATTGGCCATTCAAAATAACA CCATTTTTCTCCGGTAATTTTGATGACGGAGGTACTGATTTAATGGACAT TTTCATATTGCCTCACCCTTATGAATTGAATTCGAAGATTATATATTTGA TCAATGAACGCCCTTCCAAGTTGGACGTCATTTTGCACAAACTTATGTTA TCGTTCCTCAGTTTATTTTAACAAGGCCTGGTAATGACAGAGTTtatctt ttgtatttttccaCGAGCAAATGGTTTGTTCGAGAACTAAAAAATTAAGT GGCTATTGGAAAATGTTTCTTATCGGCAATTTTGTAGAACTAAACAAAAA GAACATGATTCAAAGAGTTGGCTATTGGCTTAACTATTTAGGCTCTGCTC TGCTAAGCCTAATCTTTTGATCTTGAAGATGTCATCTCCTACTGGATTGC AATGtatttttgtggaatttcctttgttctgtttttgtttcGTTAGTTTG GTTTGGATTTAATAAATTATTGCAAgggatctttattttttttgaaaaat attgtaaataaataCAGTGAACtttttaattcgaacctctattattcgaa tctttctataatttgaactcAAATATTGGCCCCCTGG

Coding sequence (CDS) from alignment at scaffold_52:190755..196941+

>TCONS_00070300 ID=TCONS_00070300|Name=TCONS_00070300|organism=Clytia hemisphaerica|type=CDS|length=2370bp|location=Sequence derived from alignment at scaffold_52:190755..196941+ (Clytia hemisphaerica)
ATGTCAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATCATCATGAG
AGTTCTTTGCCGCCATCCCGAATTGCATTATTATCAGGGCTACCACGACA
TTGCGGTGACGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTG
TTGGAACAACTCTCAACTAATCACATCAGAGATTTTATGGATAAAAATAT
GAATCGGACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAG
TGGACCAACAATTAGAACAATTTTTACTGTGCTCTGATGTGGGTACCATC
TTTGCTTTGAGTTGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTT
TGAAACTATCGTTCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCA
TGCCCGTTTATGTTTCAGTCGTGCTTGTAAGAAATCATAAAACACAGGTG
CTACAACAAGAATGTGATATTTGAATGTCAAGGAAACGTGTCTTGCAACA
GCAGTTGACTAACATCATCATGAGAGTTCTTTGCCGCCATCCCGAATTGC
ATTATTATCAGGGCTACCACGACATTGCGGTGACGTTGTTGCGTGTGGTG
GGAGAAGAATTGGCTTTTAGTCTGTTGGAACAACTCTCAACTAATCACAT
CAGAGATTTTATGGATAAAAATATGAATCGGACGAATCGCATGTTGTCGC
TCTTTTATGCTGTCTTGAGTAAAGTGGACCAACAATTAGAACAATTTTTA
CTGTGCTCTGATGTGGGTACCATCTTTGCTTTGAGTTGGTTGATCACGTG
GTTTGGGCATGACGTCAACAGTTTTGAAACTATCGTTCGATTGTGCGATT
TCTTTTTGGCCACACATCCTGTCATGCCCGTTTATGTTTCAGTCGTGCTT
GTAAGAAATCATAAAACACAGGTGCTACAACAAGAATGTGATATTTGAAT
GTCAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATCATCATGAGAG
TTCTTTGCCGCCATCCCGAATTGCATTATTATCAGGGCTACCACGACATT
GCGGTGACGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTGTT
GGAACAACTCTCAACTAATCACATCAGAGATTTTATGGATAAAAATATGA
ATCGGACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAGTG
GACCAACAATTAGAACAATTTTTACTGTGCTCTGATGTGGGTACCATCTT
TGCTTTGAGTTGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTTTG
AAACTATCGTTCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCATG
CCCGTTTATGTTTCAGTCGTGCTTGTAAGAAATCATAAAACACAGGTGCT
ACAACAAGAATGTGATATTTGAATGTCAAGGAAACGTGTCTTGCAACAGC
AGTTGACTAACATCATCATGAGAGTTCTTTGCCGCCATCCCGAATTGCAT
TATTATCAGGGCTACCACGACATTGCGGTGACGTTGTTGCGTGTGGTGGG
AGAAGAATTGGCTTTTAGTCTGTTGGAACAACTCTCAACTAATCACATCA
GAGATTTTATGGATAAAAATATGAATCGGACGAATCGCATGTTGTCGCTC
TTTTATGCTGTCTTGAGTAAAGTGGACCAACAATTAGAACAATTTTTACT
GTGCTCTGATGTGGGTACCATCTTTGCTTTGAGTTGGTTGATCACGTGGT
TTGGGCATGACGTCAACAGTTTTGAAACTATCGTTCGATTGTGCGATTTC
TTTTTGGCCACACATCCTGTCATGCCCGTTTATGTTTCAGTCGTGCTTGT
AAGAAATCATAAAACACAGGTGCTACAACAAGAATGTGATATTTGAATGT
CAAGGAAACGTGTCTTGCAACAGCAGTTGACTAACATCATCATGAGAGTT
CTTTGCCGCCATCCCGAATTGCATTATTATCAGGGCTACCACGACATTGC
GGTGACGTTGTTGCGTGTGGTGGGAGAAGAATTGGCTTTTAGTCTGTTGG
AACAACTCTCAACTAATCACATCAGAGATTTTATGGATAAAAATATGAAT
CGGACGAATCGCATGTTGTCGCTCTTTTATGCTGTCTTGAGTAAAGTGGA
CCAACAATTAGAACAATTTTTACTGTGCTCTGATGTGGGTACCATCTTTG
CTTTGAGTTGGTTGATCACGTGGTTTGGGCATGACGTCAACAGTTTTGAA
ACTATCGTTCGATTGTGCGATTTCTTTTTGGCCACACATCCTGTCATGCC
CGTTTATGTTTCAGTCGTGCTTGTAAGAAATCATAAAACACAGGTGCTAC
AACAAGAATGTGATATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043778XLOC_043778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070300-exon-scaffold_52-1491911889:190755..190860TCONS_00070300-exon-scaffold_52-1491911889:190755..190860Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:190755..190860TCONS_00070300-exon-scaffold_52-1510915933:190755..190860Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:190755..190860TCONS_00070300-exon-scaffold_52-1575043694:190755..190860Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:192105..192199TCONS_00070300-exon-scaffold_52-1491911889:192105..192199Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:192105..192199TCONS_00070300-exon-scaffold_52-1510915933:192105..192199Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:192105..192199TCONS_00070300-exon-scaffold_52-1575043694:192105..192199Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:192683..192774TCONS_00070300-exon-scaffold_52-1491911889:192683..192774Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:192683..192774TCONS_00070300-exon-scaffold_52-1510915933:192683..192774Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:192683..192774TCONS_00070300-exon-scaffold_52-1575043694:192683..192774Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:193027..193128TCONS_00070300-exon-scaffold_52-1491911889:193027..193128Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:193027..193128TCONS_00070300-exon-scaffold_52-1510915933:193027..193128Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:193027..193128TCONS_00070300-exon-scaffold_52-1575043694:193027..193128Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:194224..194365TCONS_00070300-exon-scaffold_52-1491911889:194224..194365Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:194224..194365TCONS_00070300-exon-scaffold_52-1510915933:194224..194365Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:194224..194365TCONS_00070300-exon-scaffold_52-1575043694:194224..194365Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:194876..195029TCONS_00070300-exon-scaffold_52-1491911889:194876..195029Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:194876..195029TCONS_00070300-exon-scaffold_52-1510915933:194876..195029Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:194876..195029TCONS_00070300-exon-scaffold_52-1575043694:194876..195029Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1491911889:195974..196941TCONS_00070300-exon-scaffold_52-1491911889:195974..196941Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1510915933:195974..196941TCONS_00070300-exon-scaffold_52-1510915933:195974..196941Clytia hemisphaericaexon
TCONS_00070300-exon-scaffold_52-1575043694:195974..196941TCONS_00070300-exon-scaffold_52-1575043694:195974..196941Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070300-proteinTCONS_00070300-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:190755..196941 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
36.1367 31.0774 41.1184 43.6521 9.32011 7.13824 13.82 14.2789 10.1779 10.9251 9.51068 6.48724 11.06 9.63154 17.7793 20.71 23.3079 22.7587 14.0122 23.0219 17.0043 17.5008 34.6951 37.5679 12.1727 12.6636 23.8801 17.013 28.2956 29.0665
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
Blast
BLAST of TCONS_00070300 vs. Swiss-Prot (Human)
Match: TBC20 (TBC1 domain family member 20 OS=Homo sapiens GN=TBC1D20 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.254e-45
Identity = 92/177 (51.98%), Postives = 129/177 (72.88%), Query Frame = 1
Query:   55 WHQVNLDVSRAHRRFPVGSRMSRKRVLQQQLTNIIMRVLCRHPELHYYQGYHDIAVTLLRVVGEELAFSLLEQLSTNHIRDFMDKNMNRTNRMLSLFYAVLSKVDQQLEQFLLCSDVGTIFALSWLITWFGHDVNSFETIVRLCDFFLATHPXXXXXXXXXXXRNHKTQVLQQECDI 585
            + QV LDV R+ RRFP G    ++  LQ++L +II+ +L R+P+LHYYQGYHDI VT L VVGE LA SL+E+LST+H+RDFMD  M+ T  +L+    ++ +V+ +L  F+  ++VGTIFALSWLITWFGH ++ F  +VRL DFFLA HP+MP+Y + V+V   + +VL  +CD+
Sbjct:   96 YQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHHLRDFMDPTMDNTKHILNYLMPIIDQVNPELHDFMQSAEVGTIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDM 272          
The following BLAST results are available for this feature:
BLAST of TCONS_00070300 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBC201.254e-4551.98TBC1 domain family member 20 OS=Homo sapiens GN=TB... [more]
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