TCONS_00070296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070296
Unique NameTCONS_00070296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1293

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070296 ID=TCONS_00070296|Name=TCONS_00070296|organism=Clytia hemisphaerica|type=transcript|length=1293bp
agcaacaaaaatacaaaaaaaaatacaaaaataattcttcTCCTACGACA
AGAATCATAACATCGACAATGGCAGACTTGGTGACTTCTGGACAAATCGT
GTTGTTGGTATGGGGTGCATCTCCACCACCATCAAACATGGAGAACTATG
TCAACGAATTGAGAACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGGAG
AACGCTGAAATGCTCCTGCAATCAAAACATGACAAATCCAAATTCGATGC
TGTTTTATCAGGGACCATTTCACCAGAAGCAGGCTTCCAACATTCTGATG
AAATCTTAGCCGAAATTCTTAAAACATTGAAACCGAATGGACAATTATTC
ATAAATGATGGGAAAGATCAGCCGTTGGATAAATTGAAGTCCACTCTCAC
GATGACCGGCTATACTACCATACAAATTAAAGAAAACTCAACATCGTCAG
ATTATCAGATCAAATGTCAGAAACCAAATTTCGAAGTTGGAAAATCAAAC
AAACTCTCATTTGCTAAAAAAActcaaaacaAAGATGTTGTCAGCATATG
GACGTTATCAGCAAACgatacaaatgatgaaaatgtgGCAATCATTGATT
CTGACGCACTGTTAGACGAGAACGATTTGAAAAAACCTGATCTTTCTGGA
ATCATAACTGATTGTGGTACAAGCAAATCTGGTAAACGAAAAGCTTGCAA
AGGATGCTCTTGTGGGTTAAAAGAAGAATTATCCGGTGAAGCTGCACCTG
CCGTCAAATCTGCTTGTGGAAGTTGTTACCTTGGAGACGCATTCCGTTGT
GCAAGCTGTCCGTATCTTGGCATGCCTCCTTTCAAATCTGGTGAACAAAT
TACGTTATCTGATCGCCAGTTGCAGCCGGATGTTTATTGATGTTCTAAAG
GCTTTTGTTTCGTAAAATATCTCTCATTGCTGTTGGTGTGGGATACCGGT
GGCTTTTTTGGTTTGGTACATTCGAGCCCTGGAACAGAGGTCGATATGAC
TGTGTGGCTCTTTGCCATAGCTAATAAAAGATAACCTATTGAATGTCTTT
TTTCATACCAAATTTTGATTCAGTAGCAACAAAATAAGTTTATCAAATGG
CTTCTTGTTTAATTTTCGCAGTGTCTTGTTAGGGAATTTAGATTATCAAT
TAAGCTTACCTTGTCTTTTGGTGAATTTCAAGCAAACGATGGAAAAATAT
CActgattttttaaagctttttgatttttatatttatgtgtattttgttt
tgtaaaagaaaaatcgaaatttacaACATCGCTAACATGTTCT
Run BLAST on NCBI

protein sequence of TCONS_00070296-protein

>TCONS_00070296-protein ID=TCONS_00070296-protein|Name=TCONS_00070296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
QQKYKKKYKNNSSPTTRIITSTMADLVTSGQIVLLVWGASPPPSNMENYV
NELRTKTGADGFVQVENAEMLLQSKHDKSKFDAVLSGTISPEAGFQHSDE
ILAEILKTLKPNGQLFINDGKDQPLDKLKSTLTMTGYTTIQIKENSTSSD
YQIKCQKPNFEVGKSNKLSFAKKTQNKDVVSIWTLSANDTNDENVAIIDS
DALLDENDLKKPDLSGIITDCGTSKSGKRKACKGCSCGLKEELSGEAAPA
VKSACGSCYLGDAFRCASCPYLGMPPFKSGEQITLSDRQLQPDVY
Run BLAST on NCBI

transcript from alignment at scaffold_52:100599..107788+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070296 ID=TCONS_00070296|Name=TCONS_00070296|organism=Clytia hemisphaerica|type=transcript|length=7190bp|location=Sequence derived from alignment at scaffold_52:100599..107788+ (Clytia hemisphaerica)
agcaacaaaaatacaaaaaaaaatacaaaaataattcttcTCCTACGACA
AGAATCATAACATCGACAATGGCAGACTTGGTGACTTCTGGACAAATCGT
GTTGTTGGTATGGGGTGCATCTCCACCACCATCAAACATGGAGAACTATG
TCAACGAATTGAGAACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGGAG
AACGCTGAAATGCTCCTGCAATGTAAACTTGATAATTTGTTTTATCTATC
TAATCGAAATCTTGTCAGCAAAATTGCTCAGGATCccgatttgttctttt
aaacTCAAAGACTTAAATATACATGGCTCTTATATTCAGAATTAAACATT
TATTTGTCAACAAGTAAACAAATACATTACTGTCAGTTTCACCGTAATGA
CAGTAATGTATTTCTTTACTTGTTGACAAATAAATGTTTGATTCTAAATC
AGCTCTActtggtatagagcactttgCACTACAAAGATTACCTTCATGTT
TCTGGCTTTCATATTCATAAATTTAAAACTGTTCTTTCgcttaaaatata
aaatttttataGCCATAAATTGTTGTTTCAAGTGAAAGTCACAACAAATT
GCTGTCTTAGTATTCAAATATTCACCCATGTTGGAATTGAAACAATCGAA
TGAAACCTTTGAAACTTTGTTTCATTCGTCGATAAAGTGAtcaacaattt
ttatttatcCTTTTTCCTTTACAGCAAAACATGACAAATCCAAATTCGAT
GCTGTTTTATCAGGGACCATTTCACCAGAAGCAGGCTTCCAACATTCTGA
TGAAATCTTAGCCGAAATTCTTAAAACATTGAAACCGAATGGACAATTAT
TCATAAATGATGGGAAAGGTTTGACAGAAGGAGTTTGAATAAATTTTCGT
CTGTTTTCCGTTTTAATCCACGTCTTTAAACTTGTTTTTACCTCTTTGAT
ATATCAGCTTCTTTAACCATAGTCATGTATCCTCAActtgttcatttttc
aaaaataataattttttgagcGTGTTTTTTTGATGGGGACGAGATTTTGC
ATCTCAAACAATATTGATTAGAACAATTTTAGCCGATTAGACTTCTGGAA
CCCTCAGATTTTGTTGATCAAACTTATTTGGCCTATGCATGATGCAAATG
ATACTGGAGTTGAGCCCAGTACGGTTCGCACGTTCGACTGTTAAGAATAG
CACTGCCTTaatattgacaacaaaaatTCTATTCAACTCAACCTTTTTCC
ctataaaaacataaacaaaattaCATAAAACAAAATGATTGTGTTACTTA
GCTGTTAGAAGTAAATTCTTCCAGTGTTTTTATACGTATTTTTGCTTTCT
ATTTTCTACAGATCAGCCGTTGGATAAATTGAAGTCCACTCTCACGATGA
CCGGCTATACTACCATACAAATTGtattcttgtttttttatattagcgtg
attatgtatcggagatattctacggctacggttgcggggctgcccatacg
ggtcgtcaccaaaggcgacatgtcgttgtctactttgctctgtacgggaa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
acttgctttcacccgccattacttgccttactcgccatttccctcgccac
tttagccgtagccgtagagaattccagatacataatctcgctattacTTT
CCAGTTCtacgttttgtttttattgctaTCTAAAAGTTAGCCCGAGCGAT
ATAACTTTTTatcgtcaacatgaaaaatatgagaatCTAACTGGCTAATA
GAGAAGCGATGTTTCCCGTATTTCAACAAAGGCTCGGAAAAAATtagaac
tcgaaaaatatatcccatattattatatacctgtaggcaaaaacagccat
tgaataattcctgatataccatggctattataccacggtagaattttttt
tcacattttgcattcaaagtttgatttttttgtcgctcttgttgttatca
aagaaattcattaaaaaaaatctattgtGAATTTCATGAACaattttatg
actcaaagtaattaagaaaatcattaaaaaagaaaaataattcgaacgtt
cgattatgggagtgttttatgtGAAACGTTCGACTATTGACAtaattaat
gtttttttgtttttgcctctaggtatataataaaacatatattcaatagg
ttttcgttggttattggatttattaaccctcggtgatgtatattcaactc
ggctcCGCCTCattgaatattacatcacctcgggttaataaatctcaata
accaacttttacccattgaatatctgcttattgtACTCTGTATTGTCCTT
GCAATAACTATTACATATAATTTGAGTTTACAAAATATATCATTGTCCAA
AGTTTATTTATTGGATCGTTTGATATCAACTCTCATTGTGTATTTTGTAT
AAATCAAAAACGTAAAATCACATTTTCTTCTAACAATATTTCGATCTTTG
CAGAACtttatcaagttttttttttgattcattGATCCACGTAAATCTTT
GTCTTTTAATGTTCGATCTATATTTTGTATACTTACTTTCCAGAAAGAAA
ACTCAACATCGTCAGATTATCAGGTACTTCATTGTGGAgaatcatttttt
gaaattattttttacttctaGGAAGTATTCTCTATTTTCCAATaaggtta
aaaaaaataattctttcaaaaattacaaaataccaactttaaccctttaa
ctgccgttcgtgttttttaaggttcgacctatttgccacggaaaaaaaag
aaggttcgacctattcgCCAGATATCGGCATATGTCGACAAAAGCAGCCA
CAGAGATTACCATCACATTTtagctttattttctgaaaaatataagaaat
aaaaGTGATATATGTTTACTttaagtgaaatatttccatattgtacgagc
aaatgtctgataactggtttatcggtgacccaaaaaatgcactttttgtg
ttggagggcacttttgtagcaaagtgacgttagattgcttctaccgctac
aatgcaataacatcttttcgtcaatttatattttgtacatgtaaaataca
agatatattgtactctttttaaccaatcagattgcagatattttttggat
tgcCGATAagtataattatgaaaaacatctttgaaacatattttaattat
tcaaactGTGCTATTTAATGAAATCTAGTTCAAAATCAAACTACCAATGA
ACTTAAAGAAAAAACCTCTGGCAAATAAGTCGGGATCTCTCAGCGGCACT
GAAAGGGTTAAAGATGgtttaaaacagttttttgagTGTTAGATTTTCTT
CGAAACTTTGTAAGCTTTAAAAATATATTCTCTTTTTCACAGATCAAATG
TCAGAAACCAAATTTCGAAGTTGGAAAATCAAACAAACTCTCATTTGCTA
AAAAAAGTATGAACATACacatttcttataagaaaaaactatgtaagaac
aaaggcttcgatagccgaaatatcaagaataagataagaacaatttaagg
ctttttggacACTAAAACACCCAGTTTGttagtaaaataacaaaagcact
gaaaataagaacatgttaagaacatttttaagccttATAACTCAAAATAT
TAATTAATGTTAAAGTTTTCCTCGAAAGGAAATTGAACCTTTTTTGAATC
CGTCCTCCTTCTTCTTAAGGATCTCCAACTAAAAGGTGTTAAACTTTTCT
AATCCTAATAGGATCAGATGAAGCTGATTCAGTCCTCCTAAAGCTAGACA
GGATACCCgttctgtatttttataatctgatgtatacaggacgggtatga
cctgtgaggcagatttctgcctcaaaaacTTGACAGTggaaaattcgaat
ttagcgctgtcctcacttactaaaataaaaaccaaatttcggaagttgcg
ctctctctaagaaagtgtgaccagtaaaagaataacaaaatttgattggc
tatgttttcaaccgttattaggatctgggaaattcaaactctcagcccat
tccatgctatatatttcgccatcagcatatagaataagaaatcatagcat
ggatctgcAGGCTATCCTAAAGCAGAATGAAACCaattattcttcatttt
ttgcacttttcagctcaaaacaAAGATGTTGTCAGCATATGGACGTTATC
AGCAAACgatacaaatgatgaaaatgtggtaaataaaaaatcatttggTA
TTGTTCATAATTGATAGATTGATTCAGTTGTTTCTCATTTGCATACTTTA
GATTAGATCAAAGGTACTCTTTGAAGCCCAAGAGCCTGTAAGAACTTAGG
CTACGTCGTATCTATCTCGTTCCCAGCGTAAAACTCTTActagagtaagg
cctaaaagcctgaatctttcttttttgtaGACTAGTTTAGAACCCAGGTA
TCAAATGAGTGTAAAGATAGCTTTGTAGATCTACATTGTCCACTCGATCT
GAGCCAAGTTCAGCCTACCCTTAACAGTGCAGATCATAGCATAAAAGGAG
AGCATAGCATAAAGGTTCAACTTCCAGCCCGGTTTTATCATAGACTCATA
AAGATAATTTTAAAGCCTCCTTTCTGGTTGATATGAGTAagcaagtaagt
aagtaagtctgcgaccgcagtcggaggcgacccgaaggcttctctttcga
tagctgtccacccgaaggtaggagagggcgccactttttctccctggatt
tctccacttactcttgatccttctcttaattgctgagaatcaagcagaga
ggcatcaagtaccattttgagaatctttggttgaacccacaaccttgtga
accggatgctctaccaccggttgaaatgtttttttatgatcTTCATTCAT
AGGCAATCATTGATTCTGACGCACTGTTAGACGAGAACGATTTGAAAAAA
CCTGATCTTTCTGGAATCATAAGTATACAacttgaaaatacttttttcaa
cCAAACACCAGcttgcacacaacgttattttaacgtttatctaacgttca
caacgtccatacaaCGTCAGATTAACGTTGTGTCCCAGCTGGGACAGGAT
TGATACAATCAAACACTTTTTCCTCGTTCTGTAAAAATTGCAATCTTTTG
AAAATCGCTATTTGAATTCCAAAAAACAcagatttcaattttcttttcgt
tTCAATCTTTGTCTTTGTAATTGTTTGTCATATTGTCGAAAATTTTTAAC
TACTTAAATACTGTTTCCTTCTTTCCTAGCTGATTGTGGTACAAGCAAAT
CTGGTAAACGAAAAGCTTGCAAAGGATGGTATGTACGGATTTTTGAATTA
GCACCTGTTGTAAGCTTTTAATACGAGGCATTCTAATTTTCCATTATATA
ATTAACAAAttctttttacaaataaaaatcaTCAATTAAAACATGGAATT
TAAAGTGTTGATAATTAATTATCTGTCGGAGCACTCTTTATTGTGGTATA
AGAAATTATTAAGCAATATTAAGACATGTTTAATTTTTATGTAGCTGTGC
AGCACATGTTTGGCTAAGTTatgtaatttccgccattatggtaGCAAGCG
TTCGATTCGCGTAAAGGAATcgcctctacagattcgaatgCGTGTTTCAG
TTTTCGTGGTGGAAATTACGTAacctaaaaaacaaaacataagtCTCGAC
ACCTCTTTTTTGTGCTAGTTCTACTCCGACTCTACTAATGGAAGAGAGTA
CTTTTTGTTTGAGTGAAAAATCTGTAAGAGCATGTAATGGCTTGTCAGCA
AAATGTACAAAGGCTCTAGCTTGTGGAGACCTTGGCTtaaattttcagcc
ttaaagtTGCCAAAATGATGTTTTTTCTCTGAAAAGATACCCATGAAGAA
GTAGGATATCCTACTTAAGAGTAGTTTTCAAAAACTACTTCATTCTCCAT
TATTTTCCNAGCGTACTttttttttgagtgaaaaatctgTAAGAGCATGT
ATTGGCTTGTCAGCATAATGTACAAAGGCTCTAGCTTGTGGAGACCTTGG
CTTAAATTTTCAGCCTTTTAAAGTTGCCAAAATGATGTTTTTTCTCTGAA
AAGATACCCATGAAGAAGTAGGATATTCTACTTAAGAGTAGTTTTCAAAA
ACTACTTCATGCTCCATTATTTTCTAAAAACTATTTAattcttcattatt
tttcagCTCTTGTGGGTTAAAAGAAGAATTATCCGGTGAAGCTGCACCTG
CCGTCAAATCTGCTTGTGGAAGTGTAAGGAAAAATATAATGTAGGCGGTT
TCTACGTGACAGAGAGCTAACCTAATCTAAAGTTAAACTATTTCAAACTT
CGTAGAAGGGCAATATCGACTTAAAAGTCTTTGTctttttatattgtttt
ttttgagagctttggtataatttttttttataaaagatgtCACAGGTCTT
AAGGGTTTGCCCCTGCTATTAAGaaataaataacgagattgccaattatt
atCTTGAATGATCATTACATCCAGACTAATCTACTCTTCCTACCATTATA
TATCCATTTTTATGTTTTAGTGTTACCTTGGAGACGCATTCCGTTGTGCA
AGCTGTCCGTATCTTGGCATGCCTCCTTTCAAATCTGGTGAACAAATTAC
GTTATCTGATCGCCAGTTGCAGCCGGATGTTTATTGATGTTCTAAAGGCT
TTTGTTTCGTAAAATATCTCTCATTGCTGTTGGTGTGGGATACCGGTGGC
TTTTTTGGTTTGGTACATTCGAGCCCTGGAACAGAGGTCGATATGACTGT
GTGGCTCTTTGCCATAGCTAATAAAAGATAACCTATTGAATGTCTTTTTT
CATACCAAATTTTGATTCAGTAGCAACAAAATAAGTTTATCAAATGGCTT
CTTGTTTAATTTTCGCAGTGTCTTGTTAGGGAATTTAGATTATCAATTAA
GCTTACCTTGTCTTTTGGTGAATTTCAAGCAAACGATGGAAAAATATCAc
tgattttttaaagctttttgatttttatatttatgtgtattttgttttgt
aaaagaaaaatcgaaatttacaACATCGCTAACATGTTCT

Coding sequence (CDS) from alignment at scaffold_52:100599..107788+

>TCONS_00070296 ID=TCONS_00070296|Name=TCONS_00070296|organism=Clytia hemisphaerica|type=CDS|length=8880bp|location=Sequence derived from alignment at scaffold_52:100599..107788+ (Clytia hemisphaerica)
caacaaaaatacaaaaaaaaatacaaaaataattcttcTCCTACGACAAG
AATCATAACATCGACAATGGCAGACTTGGTGACTTCTGGACAAATCGTGT
TGTTGGTATGGGGTGCATCTCCACCACCATCAAACATGGAGAACTATGTC
AACGAATTGAGAACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGGAGAA
CGCTGAAATGCTCCTGCAATCAAAACATGACAAATCCAAATTCGATGCTG
TTTTATCAGGGACCATTTCACCAGAAGCAGGCTTCCAACATTCTGATGAA
ATCTTAGCCGAAATTCTTAAAACATTGAAACCGAATGGACAATTATTCAT
AAATGATGGGAAAGATCAGCCGTTGGATAAATTGAAGTCCACTCTCACGA
TGACCGGCTATACTACCATACAAATTAAAGAAAACTCAACATCGTCAGAT
TATCAGATCAAATGTCAGAAACCAAATTTCGAAGTTGGAAAATCAAACAA
ACTCTCATTTGCTAAAAAAActcaaaacaAAGATGTTGTCAGCATATGGA
CGTTATCAGCAAACgatacaaatgatgaaaatgtgGCAATCATTGATTCT
GACGCACTGTTAGACGAGAACGATTTGAAAAAACCTGATCTTTCTGGAAT
CATAACTGATTGTGGTACAAGCAAATCTGGTAAACGAAAAGCTTGCAAAG
GATGCTCTTGTGGGTTAAAAGAAGAATTATCCGGTGAAGCTGCACCTGCC
GTCAAATCTGCTTGTGGAAGTTGTTACCTTGGAGACGCATTCCGTTGTGC
AAGCTGTCCGTATCTTGGCATGCCTCCTTTCAAATCTGGTGAACAAATTA
CGTTATCTGATCGCCAGTTGCAGCCGGATGTTTATTGAcaacaaaaatac
aaaaaaaaatacaaaaataattcttcTCCTACGACAAGAATCATAACATC
GACAATGGCAGACTTGGTGACTTCTGGACAAATCGTGTTGTTGGTATGGG
GTGCATCTCCACCACCATCAAACATGGAGAACTATGTCAACGAATTGAGA
ACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGGAGAACGCTGAAATGCT
CCTGCAATCAAAACATGACAAATCCAAATTCGATGCTGTTTTATCAGGGA
CCATTTCACCAGAAGCAGGCTTCCAACATTCTGATGAAATCTTAGCCGAA
ATTCTTAAAACATTGAAACCGAATGGACAATTATTCATAAATGATGGGAA
AGATCAGCCGTTGGATAAATTGAAGTCCACTCTCACGATGACCGGCTATA
CTACCATACAAATTAAAGAAAACTCAACATCGTCAGATTATCAGATCAAA
TGTCAGAAACCAAATTTCGAAGTTGGAAAATCAAACAAACTCTCATTTGC
TAAAAAAActcaaaacaAAGATGTTGTCAGCATATGGACGTTATCAGCAA
ACgatacaaatgatgaaaatgtgGCAATCATTGATTCTGACGCACTGTTA
GACGAGAACGATTTGAAAAAACCTGATCTTTCTGGAATCATAACTGATTG
TGGTACAAGCAAATCTGGTAAACGAAAAGCTTGCAAAGGATGCTCTTGTG
GGTTAAAAGAAGAATTATCCGGTGAAGCTGCACCTGCCGTCAAATCTGCT
TGTGGAAGTTGTTACCTTGGAGACGCATTCCGTTGTGCAAGCTGTCCGTA
TCTTGGCATGCCTCCTTTCAAATCTGGTGAACAAATTACGTTATCTGATC
GCCAGTTGCAGCCGGATGTTTATTGAcaacaaaaatacaaaaaaaaatac
aaaaataattcttcTCCTACGACAAGAATCATAACATCGACAATGGCAGA
CTTGGTGACTTCTGGACAAATCGTGTTGTTGGTATGGGGTGCATCTCCAC
CACCATCAAACATGGAGAACTATGTCAACGAATTGAGAACAAAGACTGGT
GCAGATGGTTTCGTCCAAGTGGAGAACGCTGAAATGCTCCTGCAATCAAA
ACATGACAAATCCAAATTCGATGCTGTTTTATCAGGGACCATTTCACCAG
AAGCAGGCTTCCAACATTCTGATGAAATCTTAGCCGAAATTCTTAAAACA
TTGAAACCGAATGGACAATTATTCATAAATGATGGGAAAGATCAGCCGTT
GGATAAATTGAAGTCCACTCTCACGATGACCGGCTATACTACCATACAAA
TTAAAGAAAACTCAACATCGTCAGATTATCAGATCAAATGTCAGAAACCA
AATTTCGAAGTTGGAAAATCAAACAAACTCTCATTTGCTAAAAAAActca
aaacaAAGATGTTGTCAGCATATGGACGTTATCAGCAAACgatacaaatg
atgaaaatgtgGCAATCATTGATTCTGACGCACTGTTAGACGAGAACGAT
TTGAAAAAACCTGATCTTTCTGGAATCATAACTGATTGTGGTACAAGCAA
ATCTGGTAAACGAAAAGCTTGCAAAGGATGCTCTTGTGGGTTAAAAGAAG
AATTATCCGGTGAAGCTGCACCTGCCGTCAAATCTGCTTGTGGAAGTTGT
TACCTTGGAGACGCATTCCGTTGTGCAAGCTGTCCGTATCTTGGCATGCC
TCCTTTCAAATCTGGTGAACAAATTACGTTATCTGATCGCCAGTTGCAGC
CGGATGTTTATTGAcaacaaaaatacaaaaaaaaatacaaaaataattct
tcTCCTACGACAAGAATCATAACATCGACAATGGCAGACTTGGTGACTTC
TGGACAAATCGTGTTGTTGGTATGGGGTGCATCTCCACCACCATCAAACA
TGGAGAACTATGTCAACGAATTGAGAACAAAGACTGGTGCAGATGGTTTC
GTCCAAGTGGAGAACGCTGAAATGCTCCTGCAATCAAAACATGACAAATC
CAAATTCGATGCTGTTTTATCAGGGACCATTTCACCAGAAGCAGGCTTCC
AACATTCTGATGAAATCTTAGCCGAAATTCTTAAAACATTGAAACCGAAT
GGACAATTATTCATAAATGATGGGAAAGATCAGCCGTTGGATAAATTGAA
GTCCACTCTCACGATGACCGGCTATACTACCATACAAATTAAAGAAAACT
CAACATCGTCAGATTATCAGATCAAATGTCAGAAACCAAATTTCGAAGTT
GGAAAATCAAACAAACTCTCATTTGCTAAAAAAActcaaaacaAAGATGT
TGTCAGCATATGGACGTTATCAGCAAACgatacaaatgatgaaaatgtgG
CAATCATTGATTCTGACGCACTGTTAGACGAGAACGATTTGAAAAAACCT
GATCTTTCTGGAATCATAACTGATTGTGGTACAAGCAAATCTGGTAAACG
AAAAGCTTGCAAAGGATGCTCTTGTGGGTTAAAAGAAGAATTATCCGGTG
AAGCTGCACCTGCCGTCAAATCTGCTTGTGGAAGTTGTTACCTTGGAGAC
GCATTCCGTTGTGCAAGCTGTCCGTATCTTGGCATGCCTCCTTTCAAATC
TGGTGAACAAATTACGTTATCTGATCGCCAGTTGCAGCCGGATGTTTATT
GAcaacaaaaatacaaaaaaaaatacaaaaataattcttcTCCTACGACA
AGAATCATAACATCGACAATGGCAGACTTGGTGACTTCTGGACAAATCGT
GTTGTTGGTATGGGGTGCATCTCCACCACCATCAAACATGGAGAACTATG
TCAACGAATTGAGAACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGGAG
AACGCTGAAATGCTCCTGCAATCAAAACATGACAAATCCAAATTCGATGC
TGTTTTATCAGGGACCATTTCACCAGAAGCAGGCTTCCAACATTCTGATG
AAATCTTAGCCGAAATTCTTAAAACATTGAAACCGAATGGACAATTATTC
ATAAATGATGGGAAAGATCAGCCGTTGGATAAATTGAAGTCCACTCTCAC
GATGACCGGCTATACTACCATACAAATTAAAGAAAACTCAACATCGTCAG
ATTATCAGATCAAATGTCAGAAACCAAATTTCGAAGTTGGAAAATCAAAC
AAACTCTCATTTGCTAAAAAAActcaaaacaAAGATGTTGTCAGCATATG
GACGTTATCAGCAAACgatacaaatgatgaaaatgtgGCAATCATTGATT
CTGACGCACTGTTAGACGAGAACGATTTGAAAAAACCTGATCTTTCTGGA
ATCATAACTGATTGTGGTACAAGCAAATCTGGTAAACGAAAAGCTTGCAA
AGGATGCTCTTGTGGGTTAAAAGAAGAATTATCCGGTGAAGCTGCACCTG
CCGTCAAATCTGCTTGTGGAAGTTGTTACCTTGGAGACGCATTCCGTTGT
GCAAGCTGTCCGTATCTTGGCATGCCTCCTTTCAAATCTGGTGAACAAAT
TACGTTATCTGATCGCCAGTTGCAGCCGGATGTTTATTGAcaacaaaaat
acaaaaaaaaatacaaaaataattcttcTCCTACGACAAGAATCATAACA
TCGACAATGGCAGACTTGGTGACTTCTGGACAAATCGTGTTGTTGGTATG
GGGTGCATCTCCACCACCATCAAACATGGAGAACTATGTCAACGAATTGA
GAACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGGAGAACGCTGAAATG
CTCCTGCAATCAAAACATGACAAATCCAAATTCGATGCTGTTTTATCAGG
GACCATTTCACCAGAAGCAGGCTTCCAACATTCTGATGAAATCTTAGCCG
AAATTCTTAAAACATTGAAACCGAATGGACAATTATTCATAAATGATGGG
AAAGATCAGCCGTTGGATAAATTGAAGTCCACTCTCACGATGACCGGCTA
TACTACCATACAAATTAAAGAAAACTCAACATCGTCAGATTATCAGATCA
AATGTCAGAAACCAAATTTCGAAGTTGGAAAATCAAACAAACTCTCATTT
GCTAAAAAAActcaaaacaAAGATGTTGTCAGCATATGGACGTTATCAGC
AAACgatacaaatgatgaaaatgtgGCAATCATTGATTCTGACGCACTGT
TAGACGAGAACGATTTGAAAAAACCTGATCTTTCTGGAATCATAACTGAT
TGTGGTACAAGCAAATCTGGTAAACGAAAAGCTTGCAAAGGATGCTCTTG
TGGGTTAAAAGAAGAATTATCCGGTGAAGCTGCACCTGCCGTCAAATCTG
CTTGTGGAAGTTGTTACCTTGGAGACGCATTCCGTTGTGCAAGCTGTCCG
TATCTTGGCATGCCTCCTTTCAAATCTGGTGAACAAATTACGTTATCTGA
TCGCCAGTTGCAGCCGGATGTTTATTGAcaacaaaaatacaaaaaaaaat
acaaaaataattcttcTCCTACGACAAGAATCATAACATCGACAATGGCA
GACTTGGTGACTTCTGGACAAATCGTGTTGTTGGTATGGGGTGCATCTCC
ACCACCATCAAACATGGAGAACTATGTCAACGAATTGAGAACAAAGACTG
GTGCAGATGGTTTCGTCCAAGTGGAGAACGCTGAAATGCTCCTGCAATCA
AAACATGACAAATCCAAATTCGATGCTGTTTTATCAGGGACCATTTCACC
AGAAGCAGGCTTCCAACATTCTGATGAAATCTTAGCCGAAATTCTTAAAA
CATTGAAACCGAATGGACAATTATTCATAAATGATGGGAAAGATCAGCCG
TTGGATAAATTGAAGTCCACTCTCACGATGACCGGCTATACTACCATACA
AATTAAAGAAAACTCAACATCGTCAGATTATCAGATCAAATGTCAGAAAC
CAAATTTCGAAGTTGGAAAATCAAACAAACTCTCATTTGCTAAAAAAAct
caaaacaAAGATGTTGTCAGCATATGGACGTTATCAGCAAACgatacaaa
tgatgaaaatgtgGCAATCATTGATTCTGACGCACTGTTAGACGAGAACG
ATTTGAAAAAACCTGATCTTTCTGGAATCATAACTGATTGTGGTACAAGC
AAATCTGGTAAACGAAAAGCTTGCAAAGGATGCTCTTGTGGGTTAAAAGA
AGAATTATCCGGTGAAGCTGCACCTGCCGTCAAATCTGCTTGTGGAAGTT
GTTACCTTGGAGACGCATTCCGTTGTGCAAGCTGTCCGTATCTTGGCATG
CCTCCTTTCAAATCTGGTGAACAAATTACGTTATCTGATCGCCAGTTGCA
GCCGGATGTTTATTGAcaacaaaaatacaaaaaaaaatacaaaaataatt
cttcTCCTACGACAAGAATCATAACATCGACAATGGCAGACTTGGTGACT
TCTGGACAAATCGTGTTGTTGGTATGGGGTGCATCTCCACCACCATCAAA
CATGGAGAACTATGTCAACGAATTGAGAACAAAGACTGGTGCAGATGGTT
TCGTCCAAGTGGAGAACGCTGAAATGCTCCTGCAATCAAAACATGACAAA
TCCAAATTCGATGCTGTTTTATCAGGGACCATTTCACCAGAAGCAGGCTT
CCAACATTCTGATGAAATCTTAGCCGAAATTCTTAAAACATTGAAACCGA
ATGGACAATTATTCATAAATGATGGGAAAGATCAGCCGTTGGATAAATTG
AAGTCCACTCTCACGATGACCGGCTATACTACCATACAAATTAAAGAAAA
CTCAACATCGTCAGATTATCAGATCAAATGTCAGAAACCAAATTTCGAAG
TTGGAAAATCAAACAAACTCTCATTTGCTAAAAAAActcaaaacaAAGAT
GTTGTCAGCATATGGACGTTATCAGCAAACgatacaaatgatgaaaatgt
gGCAATCATTGATTCTGACGCACTGTTAGACGAGAACGATTTGAAAAAAC
CTGATCTTTCTGGAATCATAACTGATTGTGGTACAAGCAAATCTGGTAAA
CGAAAAGCTTGCAAAGGATGCTCTTGTGGGTTAAAAGAAGAATTATCCGG
TGAAGCTGCACCTGCCGTCAAATCTGCTTGTGGAAGTTGTTACCTTGGAG
ACGCATTCCGTTGTGCAAGCTGTCCGTATCTTGGCATGCCTCCTTTCAAA
TCTGGTGAACAAATTACGTTATCTGATCGCCAGTTGCAGCCGGATGTTTA
TTGAcaacaaaaatacaaaaaaaaatacaaaaataattcttcTCCTACGA
CAAGAATCATAACATCGACAATGGCAGACTTGGTGACTTCTGGACAAATC
GTGTTGTTGGTATGGGGTGCATCTCCACCACCATCAAACATGGAGAACTA
TGTCAACGAATTGAGAACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGG
AGAACGCTGAAATGCTCCTGCAATCAAAACATGACAAATCCAAATTCGAT
GCTGTTTTATCAGGGACCATTTCACCAGAAGCAGGCTTCCAACATTCTGA
TGAAATCTTAGCCGAAATTCTTAAAACATTGAAACCGAATGGACAATTAT
TCATAAATGATGGGAAAGATCAGCCGTTGGATAAATTGAAGTCCACTCTC
ACGATGACCGGCTATACTACCATACAAATTAAAGAAAACTCAACATCGTC
AGATTATCAGATCAAATGTCAGAAACCAAATTTCGAAGTTGGAAAATCAA
ACAAACTCTCATTTGCTAAAAAAActcaaaacaAAGATGTTGTCAGCATA
TGGACGTTATCAGCAAACgatacaaatgatgaaaatgtgGCAATCATTGA
TTCTGACGCACTGTTAGACGAGAACGATTTGAAAAAACCTGATCTTTCTG
GAATCATAACTGATTGTGGTACAAGCAAATCTGGTAAACGAAAAGCTTGC
AAAGGATGCTCTTGTGGGTTAAAAGAAGAATTATCCGGTGAAGCTGCACC
TGCCGTCAAATCTGCTTGTGGAAGTTGTTACCTTGGAGACGCATTCCGTT
GTGCAAGCTGTCCGTATCTTGGCATGCCTCCTTTCAAATCTGGTGAACAA
ATTACGTTATCTGATCGCCAGTTGCAGCCGGATGTTTATTGAcaacaaaa
atacaaaaaaaaatacaaaaataattcttcTCCTACGACAAGAATCATAA
CATCGACAATGGCAGACTTGGTGACTTCTGGACAAATCGTGTTGTTGGTA
TGGGGTGCATCTCCACCACCATCAAACATGGAGAACTATGTCAACGAATT
GAGAACAAAGACTGGTGCAGATGGTTTCGTCCAAGTGGAGAACGCTGAAA
TGCTCCTGCAATCAAAACATGACAAATCCAAATTCGATGCTGTTTTATCA
GGGACCATTTCACCAGAAGCAGGCTTCCAACATTCTGATGAAATCTTAGC
CGAAATTCTTAAAACATTGAAACCGAATGGACAATTATTCATAAATGATG
GGAAAGATCAGCCGTTGGATAAATTGAAGTCCACTCTCACGATGACCGGC
TATACTACCATACAAATTAAAGAAAACTCAACATCGTCAGATTATCAGAT
CAAATGTCAGAAACCAAATTTCGAAGTTGGAAAATCAAACAAACTCTCAT
TTGCTAAAAAAActcaaaacaAAGATGTTGTCAGCATATGGACGTTATCA
GCAAACgatacaaatgatgaaaatgtgGCAATCATTGATTCTGACGCACT
GTTAGACGAGAACGATTTGAAAAAACCTGATCTTTCTGGAATCATAACTG
ATTGTGGTACAAGCAAATCTGGTAAACGAAAAGCTTGCAAAGGATGCTCT
TGTGGGTTAAAAGAAGAATTATCCGGTGAAGCTGCACCTGCCGTCAAATC
TGCTTGTGGAAGTTGTTACCTTGGAGACGCATTCCGTTGTGCAAGCTGTC
CGTATCTTGGCATGCCTCCTTTCAAATCTGGTGAACAAATTACGTTATCT
GATCGCCAGTTGCAGCCGGATGTTTATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043774XLOC_043774Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070296-proteinTCONS_00070296-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070296-exon-scaffold_52-1491911889:100599..100820TCONS_00070296-exon-scaffold_52-1491911889:100599..100820Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:100599..100820TCONS_00070296-exon-scaffold_52-1510915933:100599..100820Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:100599..100820TCONS_00070296-exon-scaffold_52-1575043694:100599..100820Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:101323..101466TCONS_00070296-exon-scaffold_52-1491911889:101323..101466Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:101323..101466TCONS_00070296-exon-scaffold_52-1510915933:101323..101466Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:101323..101466TCONS_00070296-exon-scaffold_52-1575043694:101323..101466Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:101960..102021TCONS_00070296-exon-scaffold_52-1491911889:101960..102021Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:101960..102021TCONS_00070296-exon-scaffold_52-1510915933:101960..102021Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:101960..102021TCONS_00070296-exon-scaffold_52-1575043694:101960..102021Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:103292..103321TCONS_00070296-exon-scaffold_52-1491911889:103292..103321Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:103292..103321TCONS_00070296-exon-scaffold_52-1510915933:103292..103321Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:103292..103321TCONS_00070296-exon-scaffold_52-1575043694:103292..103321Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:104091..104154TCONS_00070296-exon-scaffold_52-1491911889:104091..104154Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:104091..104154TCONS_00070296-exon-scaffold_52-1510915933:104091..104154Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:104091..104154TCONS_00070296-exon-scaffold_52-1575043694:104091..104154Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:104862..104926TCONS_00070296-exon-scaffold_52-1491911889:104862..104926Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:104862..104926TCONS_00070296-exon-scaffold_52-1510915933:104862..104926Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:104862..104926TCONS_00070296-exon-scaffold_52-1575043694:104862..104926Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:105601..105670TCONS_00070296-exon-scaffold_52-1491911889:105601..105670Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:105601..105670TCONS_00070296-exon-scaffold_52-1510915933:105601..105670Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:105601..105670TCONS_00070296-exon-scaffold_52-1575043694:105601..105670Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:105978..106026TCONS_00070296-exon-scaffold_52-1491911889:105978..106026Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:105978..106026TCONS_00070296-exon-scaffold_52-1510915933:105978..106026Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:105978..106026TCONS_00070296-exon-scaffold_52-1575043694:105978..106026Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:106905..106971TCONS_00070296-exon-scaffold_52-1491911889:106905..106971Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:106905..106971TCONS_00070296-exon-scaffold_52-1510915933:106905..106971Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:106905..106971TCONS_00070296-exon-scaffold_52-1575043694:106905..106971Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1491911889:107269..107788TCONS_00070296-exon-scaffold_52-1491911889:107269..107788Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1510915933:107269..107788TCONS_00070296-exon-scaffold_52-1510915933:107269..107788Clytia hemisphaericaexon
TCONS_00070296-exon-scaffold_52-1575043694:107269..107788TCONS_00070296-exon-scaffold_52-1575043694:107269..107788Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:100599..107788 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
117.168	118.566	145.189	153.465	37.9572	30.5174	50.6616	51.4862	66.8532	59.9542	63.8962	76.246	82.9312	97.1787	84.1685	77.442	69.4571	84.1855	63.4939	60.8352	64.585	59.2694	74.2262	67.8236	60.9314	71.4087	49.6343	58.9579	45.5893	48.817
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007785Anamorsin
IPR029063SAM-dependent_MTases
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
Vocabulary: Molecular Function
TermDefinition
GO:0051536iron-sulfur cluster binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016226 iron-sulfur cluster assembly
cellular_component GO:0005737 cytoplasm
molecular_function GO:0051536 iron-sulfur cluster binding
Blast
[Close]
BLAST of TCONS_00070296 vs. Swiss-Prot (Human)
Match: CPIN1 (Anamorsin OS=Homo sapiens GN=CIAPIN1 PE=1 SV=2)

HSP 1 Score: 224.172 bits (570), Expect = 8.264e-69
Identity = 139/313 (44.41%), Postives = 181/313 (57.83%), Query Frame = 3 
Query:   69 MADL-VTSGQIVLLVWGASPPPSNMENYVNELRTKTGADGFVQVENAEMLLQSKHDKSKFDAVLSGTISPEAGFQHSDEILAEILKTLKPNGQLFI---------NDGKDQPLDKLKSTLTMTGYTTIQ--------------IKEN-STSSD----YQIKCQKPNFEVGKSN--KLSFAKKTQ-------NKDVVSIWTLSANDTNDENVAIIDSDALLDENDLKKPDLSGI-ITDCGTSKSGKRKACKGCSCGLKEELSGE-----AAPAVKSACGSCYLGDAFRCASCPYLGMPPFKSGEQITLSDRQLQ 875
            MAD  +++GQ V +VW  S P   ++  V++L+  TG +G V VEN + LLQS H +S FD +LSG + P +   HS EILAEI + L+P G LF+         N+ K +   KL S LT++G   ++              ++E+    SD     QI  +KPNFEVG S   KLS  KK+        +     +WTLSAND  D+++ +IDSD LLD  DLKKPD + +    CG  K  KRKACK C+CGL EEL  E      +   KSACG+CYLGDAFRCASCPYLGMP FK GE++ LSD  L 
Sbjct:    1 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV-PGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGK--KRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNLH 310
The following BLAST results are available for this feature:
BLAST of TCONS_00070296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CPIN18.264e-6944.41Anamorsin OS=Homo sapiens GN=CIAPIN1 PE=1 SV=2[more]
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