Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070296 ID=TCONS_00070296|Name=TCONS_00070296|organism=Clytia hemisphaerica|type=transcript|length=1293bpRun BLAST on NCBI protein sequence of TCONS_00070296-protein >TCONS_00070296-protein ID=TCONS_00070296-protein|Name=TCONS_00070296-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp QQKYKKKYKNNSSPTTRIITSTMADLVTSGQIVLLVWGASPPPSNMENYVRun BLAST on NCBI transcript from alignment at scaffold_52:100599..107788+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070296 ID=TCONS_00070296|Name=TCONS_00070296|organism=Clytia hemisphaerica|type=transcript|length=7190bp|location=Sequence derived from alignment at scaffold_52:100599..107788+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_52:100599..107788+ >TCONS_00070296 ID=TCONS_00070296|Name=TCONS_00070296|organism=Clytia hemisphaerica|type=CDS|length=8880bp|location=Sequence derived from alignment at scaffold_52:100599..107788+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2 Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070296 vs. Swiss-Prot (Human)
Match: CPIN1 (Anamorsin OS=Homo sapiens GN=CIAPIN1 PE=1 SV=2) HSP 1 Score: 224.172 bits (570), Expect = 8.264e-69 Identity = 139/313 (44.41%), Postives = 181/313 (57.83%), Query Frame = 3 Query: 69 MADL-VTSGQIVLLVWGASPPPSNMENYVNELRTKTGADGFVQVENAEMLLQSKHDKSKFDAVLSGTISPEAGFQHSDEILAEILKTLKPNGQLFI---------NDGKDQPLDKLKSTLTMTGYTTIQ--------------IKEN-STSSD----YQIKCQKPNFEVGKSN--KLSFAKKTQ-------NKDVVSIWTLSANDTNDENVAIIDSDALLDENDLKKPDLSGI-ITDCGTSKSGKRKACKGCSCGLKEELSGE-----AAPAVKSACGSCYLGDAFRCASCPYLGMPPFKSGEQITLSDRQLQ 875 MAD +++GQ V +VW S P ++ V++L+ TG +G V VEN + LLQS H +S FD +LSG + P + HS EILAEI + L+P G LF+ N+ K + KL S LT++G ++ ++E+ SD QI +KPNFEVG S KLS KK+ + +WTLSAND D+++ +IDSD LLD DLKKPD + + CG K KRKACK C+CGL EEL E + KSACG+CYLGDAFRCASCPYLGMP FK GE++ LSD L Sbjct: 1 MADFGISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV-PGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGLVEVKELQREPLTPEEVQSVREHLGHESDNLLFVQITGKKPNFEVGSSRQLKLSITKKSSPSVKPAVDPAAAKLWTLSANDMEDDSMDLIDSDELLDPEDLKKPDPASLRAASCGEGK--KRKACKNCTCGLAEELEKEKSREQMSSQPKSACGNCYLGDAFRCASCPYLGMPAFKPGEKVLLSDSNLH 310 The following BLAST results are available for this feature:
BLAST of TCONS_00070296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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