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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070295 ID=TCONS_00070295|Name=TCONS_00070295|organism=Clytia hemisphaerica|type=transcript|length=1286bp
GTCAACTCTgtatgtaaattttttgagaacCTCTGTATTCTTAAGAACCT
CTGTGTGTTAGGAAATGTTCAAACCCTGCTCCTGGTGTTATTCAAGTAAC
CAAGAGTATGTAGTGTTTTTGCAAGTTTTCCCTTTTATTGCAATATTGAT
AACAAGCATAACAATTCTTATTCCTCCATTTCAGTCATAATGCAGATTTT
TGTACAAACATTAACAGACAAAATAATAACATTGGAAGTTGAACCAAGCG
ATACTATAGATAATGTCAAAGCCAAAATTGAAGAAAAGGAGGGTATCAAA
CCAGACCAACAACGTCTGATTTTTGCAGGCAGACAGCTGGAAGATGGGCG
TACGATTTCTGATTATAATATTCAATGTAATATGCAGTTGCACTTAGTAC
TTCGATTGCGAGGGATGATATCCAATTTCTCTGAATACGATGTCACTGAC
CCTGTTACAGCATTTTTAATGAAAGGTGACATAAGTGGAGTTGAAATCTC
AGATGAACTTTTAAAGGAGAAACGTGAGAGATTTGATGGTGCTGAAACTA
CAACGTTGAAACTTGAATATACTTGTGACAACATTATGGATAACGGTCAA
AGAAAGAAATTGATAGGCGTTGCTGATTACATCCACTCATTGCAACAAAT
ACAAAACAAATCAGGAATTATCTTACAAGATATCAAAATTGTATTTCCTG
AAGGTATGTTGAATCAAATTACTGAAAGTGATTCAGTTGAGAATCTTTTG
AAAAGTCACCATGTTAGCTCTTATGGAAAGAAATTAGTACTGCGGAGAAC
AGCGCCCACTGAAGGATGTCTACCCTGGCATGTTGATGGGCCTTACTCTC
AAACTGTCGTTCAATACACGCTCAACGATGATAAAGAATTCAGAGGAGGT
AGATTGTGTTATTACACAGAGGATGTAGGCCTGCTTGTTCCTCGCCGTCC
TACAGGCACCTTGTGTGTACATCATAGAGAGATGCATGCAGTCTCAAAGC
TGTTAAGTGGGGTACGATATGTTTTCTTTGTTGTTGATGATATAAATGAT
TTGGGTGAGCAAACTGGAGCAAATATTATCACATTGGAGCAATCAATCAT
TGATACAATGACCGCAACTTTAGGGGTGTTAAAGTAATCTCAATCATACG
AAaaactaggctacgtcatatcttcttaatatttttgtttccaaaaatat
acacgAACCGAACTCGtagaaattttgttggctctaGAGAGAATCACCCT
TCTTGATGGTGAAGTTTCAATCAGAATCTTCATTCT Run BLAST on NCBI transcript from alignment at scaffold_52:99089..100374+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070295 ID=TCONS_00070295|Name=TCONS_00070295|organism=Clytia hemisphaerica|type=transcript|length=1286bp|location=Sequence derived from alignment at scaffold_52:99089..100374+ (Clytia hemisphaerica)
GTCAACTCTgtatgtaaattttttgagaacCTCTGTATTCTTAAGAACCT
CTGTGTGTTAGGAAATGTTCAAACCCTGCTCCTGGTGTTATTCAAGTAAC
CAAGAGTATGTAGTGTTTTTGCAAGTTTTCCCTTTTATTGCAATATTGAT
AACAAGCATAACAATTCTTATTCCTCCATTTCAGTCATAATGCAGATTTT
TGTACAAACATTAACAGACAAAATAATAACATTGGAAGTTGAACCAAGCG
ATACTATAGATAATGTCAAAGCCAAAATTGAAGAAAAGGAGGGTATCAAA
CCAGACCAACAACGTCTGATTTTTGCAGGCAGACAGCTGGAAGATGGGCG
TACGATTTCTGATTATAATATTCAATGTAATATGCAGTTGCACTTAGTAC
TTCGATTGCGAGGGATGATATCCAATTTCTCTGAATACGATGTCACTGAC
CCTGTTACAGCATTTTTAATGAAAGGTGACATAAGTGGAGTTGAAATCTC
AGATGAACTTTTAAAGGAGAAACGTGAGAGATTTGATGGTGCTGAAACTA
CAACGTTGAAACTTGAATATACTTGTGACAACATTATGGATAACGGTCAA
AGAAAGAAATTGATAGGCGTTGCTGATTACATCCACTCATTGCAACAAAT
ACAAAACAAATCAGGAATTATCTTACAAGATATCAAAATTGTATTTCCTG
AAGGTATGTTGAATCAAATTACTGAAAGTGATTCAGTTGAGAATCTTTTG
AAAAGTCACCATGTTAGCTCTTATGGAAAGAAATTAGTACTGCGGAGAAC
AGCGCCCACTGAAGGATGTCTACCCTGGCATGTTGATGGGCCTTACTCTC
AAACTGTCGTTCAATACACGCTCAACGATGATAAAGAATTCAGAGGAGGT
AGATTGTGTTATTACACAGAGGATGTAGGCCTGCTTGTTCCTCGCCGTCC
TACAGGCACCTTGTGTGTACATCATAGAGAGATGCATGCAGTCTCAAAGC
TGTTAAGTGGGGTACGATATGTTTTCTTTGTTGTTGATGATATAAATGAT
TTGGGTGAGCAAACTGGAGCAAATATTATCACATTGGAGCAATCAATCAT
TGATACAATGACCGCAACTTTAGGGGTGTTAAAGTAATCTCAATCATACG
AAaaactaggctacgtcatatcttcttaatatttttgtttccaaaaatat
acacgAACCGAACTCGtagaaattttgttggctctaGAGAGAATCACCCT
TCTTGATGGTGAAGTTTCAATCAGAATCTTCATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070295-exon-scaffold_52-1491911889:99089..100374 | TCONS_00070295-exon-scaffold_52-1491911889:99089..100374 | Clytia hemisphaerica | exon |
| TCONS_00070295-exon-scaffold_52-1510915933:99089..100374 | TCONS_00070295-exon-scaffold_52-1510915933:99089..100374 | Clytia hemisphaerica | exon |
| TCONS_00070295-exon-scaffold_52-1575043694:99089..100374 | TCONS_00070295-exon-scaffold_52-1575043694:99089..100374 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:99089..100374 + |
Blast
BLAST of TCONS_00070295 vs. Swiss-Prot (Human)
Match: RL40 (Ubiquitin-60S ribosomal protein L40 OS=Homo sapiens GN=UBA52 PE=1 SV=2) HSP 1 Score: 127.487 bits (319), Expect = 7.927e-35 Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 1
Query: 190 MQIFVQTLTDKIITLEVEPSDTIDNVKAKIEEKEGIKPDQQRLIFAGRQLEDGRTISDYNIQCNMQLHLVLRLRGMI 420
MQIFV+TLT K ITLEVEPSDTI+NVKAKI++KEGI PDQQRLIFAG+QLEDGRT+SDYNIQ LHLVLRLRG I
Sbjct: 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
The following BLAST results are available for this feature:
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