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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070290 ID=TCONS_00070290|Name=TCONS_00070290|organism=Clytia hemisphaerica|type=transcript|length=1528bp
ATTCAAGCGTGATTATCAATCAGTAGTTTCACTTCCGAGGTTATCTCTGA
ACCCTGCACATTCTTTGTCCGGTGCAGCAATTTGGTTTTCACTGATCGTT
CGATAAACGGTAATCCTATCAAAACACAAATGACAAAGCGCCGCCAATTT
CTGTCGAATACTCCGTTGCAAGAAGACGTAAATGATTGGTTCAATCAGAT
TGTTCAGACAATTTAAACCAATCAGAGCGATCGTTACATCACGACGACGC
GCCGTATTATTGACAAAACGTTCAATGATGGTGGGgaccaaattcaacaa
aaaatacgAAAGAACCAAACATGCTGGAATCAAATACTTCTTGAATAAGT
CACGTGATAACGTGCTTCCCGCTGATTGGACATTATCCCTGGACGATCGT
ACGCGGATGTATATAGTGACGTAACTGAACGCCGTGAATAAGACAACAAA
TCCGTTATACGAAAATGAAACTTCTTGACGTATCTttatgctaccgttaa
gcgccGCTACGTATTTCGTTGCCAGTCCAAAAGTGACGGATAAAATCCAT
AACAGAGCGATTTGAAGGGCGAACATTTTCCGACTCATGACGTGAGAGTA
TCGAATATCAAGAAACGCCAATGCAAGTCGATCCATACTTAACAGCAACA
AATTCACCACGTAAGCAATGTATATGGTGTAGAATGTGACTCGAAACGGT
ATGTTCGTTGGTAAACTATTTGCGAATGAATAAACAGCGTATACATTGAC
TGCTAGCAAAGCGATGGAGACAGTACTTAGATGTAACAGTAATAGCGATT
GATTGGTCATTTCAGATGATTTGGTTAATATGAGGATCATACCAACAATG
TGAAATAGAAACGCCATGGTAATGATGACATATGCTATGGCGATCAGTGC
GGTAATATTACCATCGTTCACAACGGTTCCATCGGTGAAAAATTCTCCAC
AATCTCTGATGTCAATCCACATGATTGTGGGTTTTTTCTCAGGAGTTGTT
TAATGTTCGTGAAAAGTTTTCCTAAAATTATCTTGCAAATGTAATTGATC
AAGTCCAGTGGATTCCTGAATGAAGGGTTTCGAAGTACTTCAACTTTGTG
AGTGATTTCCCCCTCTTCAACTAAGTCCAACTACAATCTAGATGTTTGGT
TTGAACAAGAAGGATGTTCGATTCCGTCGTTGGagcaattttttctttca
ccaAAACAATGATATCACTATTCAGCGATCATCTCATTtgtgtcataaaa
aagttttttttctttcgttctGACAGTCTTTAATTTTGAGTCAACCAAAA
AAGCCTTTCCTTTCTTTATATTCAAACGTAGTTTGATTCAACAATGTAAT
ATCAGTCACGTTGCAACAAAATCAGTTGCTTTGTAAACACAATACTGCTC
TTTAGAAAAAGCTTGATTTCACCAAGAGACTTCTGTTTCCGTCACAACAT
TTGAATCACCGCATACGACAGCATTAAACAGCTTCACAGGACACTGGTGT
TTTACTGTTCTTTCAATGAAAGCTTCTT Run BLAST on NCBI transcript from alignment at scaffold_52:51017..52607+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070290 ID=TCONS_00070290|Name=TCONS_00070290|organism=Clytia hemisphaerica|type=transcript|length=1591bp|location=Sequence derived from alignment at scaffold_52:51017..52607+ (Clytia hemisphaerica)
ATTCAAGCGTGATTATCAATCAGTAGTTTCACTTCCGAGGTTATCTCTGA
ACCCAGTACATTCTTTGTCCGGCGCAGAGNAATCAGTAGTTTCACTTCCA
AGGTTATCTCTGAACCCTGCACATTCTTTGTCCGGTGCAGCAATTTGGTT
TTCACTGATCGTTCGATAAACGGTAATCCTATCAAAACACAAATGACAAA
GCGCCGCCAATTTCTGTCGAATACTCCGTTGCAAGAAGACGTAAATGATT
GGTTCAATCAGATTGTTCAGACAATTTAAACCAATCAGAGCGATCGTTAC
ATCACGACGACGCGCCGTATTATTGACAAAACGTTCAATGATGGTGGGga
ccaaattcaacaaaaaatacgAAAGAACCAAACATGCTGGAATCAAATAC
TTCTTGAATAAGTCACGTGATAACGTGCTTCCCGCTGATTGGACATTATC
CCTGGACGATCGTACGCGGATGTATATAGTGACGTAACTGAACGCCGTGA
ATAAGACAACAAATCCGTTATACGAAAATGAAACTTCTTGACGTATCTtt
atgctaccgttaagcgccGCTACGTATTTCGTTGCCAGTCCAAAAGTGAC
GGATAAAATCCATAACAGAGCGATTTGAAGGGCGAACATTTTCCGACTCA
TGACGTGAGAGTATCGAATATCAAGAAACGCCAATGCAAGTCGATCCATA
CTTAACAGCAACAAATTCACCACGTAAGCAATGTATATGGTGTAGAATGT
GACTCGAAACGGTATGTTCGTTGGTAAACTATTTGCGAATGAATAAACAG
CGTATACATTGACTGCTAGCAAAGCGATGGAGACAGTACTTAGATGTAAC
AGTAATAGCGATTGATTGGTCATTTCAGATGATTTGGTTAATATGAGGAT
CATACCAACAATGTGAAATAGAAACGCCATGGTAATGATGACATATGCTA
TGGCGATCAGTGCGGTAATATTACCATCGTTCACAACGGTTCCATCGGTG
AAAAATTCTCCACAATCTCTGATGTCAATCCACATGATTGTGGGTTTTTT
CTCAGGAGTTGTTTAATGTTCGTGAAAAGTTTTCCTAAAATTATCTTGCA
AATGTAATTGATCAAGTCCAGTGGATTCCTGAATGAAGGGTTTCGAAGTA
CTTCAACTTTGTGAGTGATTTCCCCCTCTTCAACTAAGTCCAACTACAAT
CTAGATGTTTGGTTTGAACAAGAAGGATGTTCGATTCCGTCGTTGGagca
attttttctttcaccaAAACAATGATATCACTATTCAGCGATCATCTCAT
TtgtgtcataaaaaagttttttttctttcgttctGACAGTCTTTAATTTT
GAGTCAACCAAAAAAGCCTTTCCTTTCTTTATATTCAAACGTAGTTTGAT
TCAACAATGTAATATCAGTCACGTTGCAACAAAATCAGTTGCTTTGTAAA
CACAATACTGCTCTTTAGAAAAAGCTTGATTTCACCAAGAGACTTCTGTT
TCCGTCACAACATTTGAATCACCGCATACGACAGCATTAAACAGCTTCAC
AGGACACTGGTGTTTTACTGTTCTTTCAATGAAAGCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070290-exon-scaffold_52-1491911889:51017..51055 | TCONS_00070290-exon-scaffold_52-1491911889:51017..51055 | Clytia hemisphaerica | exon |
| TCONS_00070290-exon-scaffold_52-1510915933:51017..51055 | TCONS_00070290-exon-scaffold_52-1510915933:51017..51055 | Clytia hemisphaerica | exon |
| TCONS_00070290-exon-scaffold_52-1575043694:51017..51055 | TCONS_00070290-exon-scaffold_52-1575043694:51017..51055 | Clytia hemisphaerica | exon |
| TCONS_00070290-exon-scaffold_52-1491911889:51119..52607 | TCONS_00070290-exon-scaffold_52-1491911889:51119..52607 | Clytia hemisphaerica | exon |
| TCONS_00070290-exon-scaffold_52-1510915933:51119..52607 | TCONS_00070290-exon-scaffold_52-1510915933:51119..52607 | Clytia hemisphaerica | exon |
| TCONS_00070290-exon-scaffold_52-1575043694:51119..52607 | TCONS_00070290-exon-scaffold_52-1575043694:51119..52607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:51017..52607 + |
Blast
The following BLAST results are available for this feature:
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