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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070289 ID=TCONS_00070289|Name=TCONS_00070289|organism=Clytia hemisphaerica|type=transcript|length=1707bp
ACTCTCCATATATCGAATTTCTATTACTcgaatatttctgtaattcgaac
taagatATTAGCCCGCTCAGTTGGAAAGTAGTTCAAACtactctctgtta
ttcgaatctttctctatgGTAGttcgaataaaatttttgttcccttgaaa
atcgaattagagagtcaaCTATAGCAATAATTCAAGCGTGATTATCAATC
AGTAGTTTCACTTCCGAGGTTATCTCTGAACCCAGTACATTCTTTGTCCG
GTGCAGCAATTTGGTTTTCACTGATCGTTCGATAAACGGTAATCCTATCA
AAACACAAATGACAAAGCGCCGCCAATTTCTGTCGAATACTCCGTTGCAA
GAAGACGTAAATGATTGGTTCAATCAGATTGTTCAGACAATTTAAACCAA
TCAGAGCGATCGTTACATCACGACGACGCGCCGTATTATTGACAAAACGT
TCAATGATGGTGGGgaccaaattcaacaaaaaatacgAAAGAACCAAACA
TGCTGGAATCAAATACTTCTTGAATAAGTCACGTGATAACGTGCTTCCCG
CTGATTGGACATTATCCCTGGACGATCGTACGCGGATGTATATAGTGACG
TAACTGAACGCCGTGAATAAGACAACAAATCCGTTATACGAAAATGAAAC
TTCTTGACGTATCTttatgctaccgttaagcgccGCTACGTATTTCGTTG
CCAGTCCAAAAGTGACGGATAAAATCCATAACAGAGCGATTTGAAGGGCG
AACATTTTCCGACTCATGACGTGAGAGTATCGAATATCAAGAAACGCCAA
TGCAAGTCGATCCATACTTAACAGCAACAAATTCACCACGTAAGCAATGT
ATATGGTGTAGAATGTGACTCGAAACGGTATGTTCGTTGGTAAACTATTT
GCGAATGAATAAACAGCGTATACATTGACTGCTAGCAAAGCGATGGAGAC
AGTACTTAGATGTAACAGTAATAGCGATTGATTGGTCATTTCAGATGATT
TGGTTAATATGAGGATCATACCAACAATGTGAAATAGAAACGCCATGGTA
ATGATGACATATGCTATGGCGATCAGTGCGGTAATATTACCATCGTTCAC
AACGGTTCCATCGGTGAAAAATTCTCCACAATCTCTGATGTCAATCCACA
TGATTGTGGGTTTTTTCTCAGGAGTTGTTTAATGTTCGTGAAAAGTTTTC
CTAAAATTATCTTGCAAATGTAATTGATCAAGTCCAGTGGATTCCTGAAT
GAAGGGTTTCGAAGTACTTCAACTTTGTGAGTGATTTCCCCCTCTTCAAC
TAAGTCCAACTACAATCTAGATGTTTGGTTTGAACAAGAAGGATGTTCGA
TTCCGTCGTTGGagcaattttttctttcaccaAAACAATGATATCACTAT
TCAGCGATCATCTCATTtgtgtcataaaaaagttttttttctttcgttct
GACAGTCTTTAATTTTGAGTCAACCAAAAAAGCCTTTCCTTTCTTTATAT
TCAAACGTAGTTTGATTCAACAATGTAATATCAGTCACGTTGCAACAAAA
TCAGTTGCTTTGTAAACACAATACTGCTCTTTAGAAAAAGCTTGATTTCA
CCAAGAGACTTCTGTTTCCGTCACAACATTTGAATCACCGCATACGACAG
CATTAAACAGCTTCACAGGACACTGGTGTTTTACTGTTCTTTCAATGAAA
GCTTCTT Run BLAST on NCBI transcript from alignment at scaffold_52:50838..52607+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070289 ID=TCONS_00070289|Name=TCONS_00070289|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at scaffold_52:50838..52607+ (Clytia hemisphaerica)
ACTCTCCATATATCGAATTTCTATTACTcgaatatttctgtaattcgaac
taagatATTAGCCCGCTCAGTTGGAAAGTAGTTCAAACtactctctgtta
ttcgaatctttctctatgGTAGttcgaataaaatttttgttcccttgaaa
atcgaattagagagtcaaCTATAGCAATAATTCAAGCGTGATTATCAATC
AGTAGTTTCACTTCCGAGGTTATCTCTGAACCCAGTACATTCTTTGTCCG
GCGCAGAGNAATCAGTAGTTTCACTTCCAAGGTTATCTCTGAACCCTGCA
CATTCTTTGTCCGGTGCAGCAATTTGGTTTTCACTGATCGTTCGATAAAC
GGTAATCCTATCAAAACACAAATGACAAAGCGCCGCCAATTTCTGTCGAA
TACTCCGTTGCAAGAAGACGTAAATGATTGGTTCAATCAGATTGTTCAGA
CAATTTAAACCAATCAGAGCGATCGTTACATCACGACGACGCGCCGTATT
ATTGACAAAACGTTCAATGATGGTGGGgaccaaattcaacaaaaaatacg
AAAGAACCAAACATGCTGGAATCAAATACTTCTTGAATAAGTCACGTGAT
AACGTGCTTCCCGCTGATTGGACATTATCCCTGGACGATCGTACGCGGAT
GTATATAGTGACGTAACTGAACGCCGTGAATAAGACAACAAATCCGTTAT
ACGAAAATGAAACTTCTTGACGTATCTttatgctaccgttaagcgccGCT
ACGTATTTCGTTGCCAGTCCAAAAGTGACGGATAAAATCCATAACAGAGC
GATTTGAAGGGCGAACATTTTCCGACTCATGACGTGAGAGTATCGAATAT
CAAGAAACGCCAATGCAAGTCGATCCATACTTAACAGCAACAAATTCACC
ACGTAAGCAATGTATATGGTGTAGAATGTGACTCGAAACGGTATGTTCGT
TGGTAAACTATTTGCGAATGAATAAACAGCGTATACATTGACTGCTAGCA
AAGCGATGGAGACAGTACTTAGATGTAACAGTAATAGCGATTGATTGGTC
ATTTCAGATGATTTGGTTAATATGAGGATCATACCAACAATGTGAAATAG
AAACGCCATGGTAATGATGACATATGCTATGGCGATCAGTGCGGTAATAT
TACCATCGTTCACAACGGTTCCATCGGTGAAAAATTCTCCACAATCTCTG
ATGTCAATCCACATGATTGTGGGTTTTTTCTCAGGAGTTGTTTAATGTTC
GTGAAAAGTTTTCCTAAAATTATCTTGCAAATGTAATTGATCAAGTCCAG
TGGATTCCTGAATGAAGGGTTTCGAAGTACTTCAACTTTGTGAGTGATTT
CCCCCTCTTCAACTAAGTCCAACTACAATCTAGATGTTTGGTTTGAACAA
GAAGGATGTTCGATTCCGTCGTTGGagcaattttttctttcaccaAAACA
ATGATATCACTATTCAGCGATCATCTCATTtgtgtcataaaaaagttttt
tttctttcgttctGACAGTCTTTAATTTTGAGTCAACCAAAAAAGCCTTT
CCTTTCTTTATATTCAAACGTAGTTTGATTCAACAATGTAATATCAGTCA
CGTTGCAACAAAATCAGTTGCTTTGTAAACACAATACTGCTCTTTAGAAA
AAGCTTGATTTCACCAAGAGACTTCTGTTTCCGTCACAACATTTGAATCA
CCGCATACGACAGCATTAAACAGCTTCACAGGACACTGGTGTTTTACTGT
TCTTTCAATGAAAGCTTCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070289-exon-scaffold_52-1491911889:50838..51075 | TCONS_00070289-exon-scaffold_52-1491911889:50838..51075 | Clytia hemisphaerica | exon |
| TCONS_00070289-exon-scaffold_52-1510915933:50838..51075 | TCONS_00070289-exon-scaffold_52-1510915933:50838..51075 | Clytia hemisphaerica | exon |
| TCONS_00070289-exon-scaffold_52-1575043694:50838..51075 | TCONS_00070289-exon-scaffold_52-1575043694:50838..51075 | Clytia hemisphaerica | exon |
| TCONS_00070289-exon-scaffold_52-1491911889:51139..52607 | TCONS_00070289-exon-scaffold_52-1491911889:51139..52607 | Clytia hemisphaerica | exon |
| TCONS_00070289-exon-scaffold_52-1510915933:51139..52607 | TCONS_00070289-exon-scaffold_52-1510915933:51139..52607 | Clytia hemisphaerica | exon |
| TCONS_00070289-exon-scaffold_52-1575043694:51139..52607 | TCONS_00070289-exon-scaffold_52-1575043694:51139..52607 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:50838..52607 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR017452 | GPCR_Rhodpsn_7TM |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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