TCONS_00070287 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070287
Unique NameTCONS_00070287
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length238

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070287 ID=TCONS_00070287|Name=TCONS_00070287|organism=Clytia hemisphaerica|type=transcript|length=238bp
aaaagaaaacACCGCGAGGGAGGGGAGCGAAGAAACCACGGCGATGGAGG
GGAGAGAAGAAACCACTGCGATGGAGGgtgaaattgaagaagaagaggAG
TCGTACACTTCGCTTGATATTGGAGAACAGTATCATGACCCCACGTGTAC
TGAATGCAAAAGAGCCTGGAAACTACCCAAACAATCCGAACTTGTCATGT
ATCTTCACGCTCATTCGTATAAGGGCCCTGGTTTCGAA
Run BLAST on NCBI

transcript from alignment at scaffold_52:23522..24478+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070287 ID=TCONS_00070287|Name=TCONS_00070287|organism=Clytia hemisphaerica|type=transcript|length=957bp|location=Sequence derived from alignment at scaffold_52:23522..24478+ (Clytia hemisphaerica)
aaaagaaaacACCGCGAGGGAGGGGAGCGAAGAAACCACGGCGATGGAGG
GGAGAGAAGAAACCACTGCGATGGAGGgtgaaattgaagaagaagaggAG
TCGTACACTTCGCTTGATATTGGAGAACAGTATCATGACCCCACGTGTAC
TGAATGCAAAAGAGCCTGGAAACTACCCAAACAATCCGAACTTGTCATGT
ATCTTCACGCTCATTCGTATAAGGTACGTTGCTTTCCattgagtgagtga
gtgagtgagtgctTGCTGTCCTGCCTCTTCGAATTTTAGAAAAGGGTGGA
CAAAAAGTGAGCAGAAAAAGAGTAGTTAAAATATTGCTTATAAAAGATTT
AATGAAGTCATTACATTAACGTCAGAAGAGGGCAATTTATTGACTTTTGA
CAGCCAACCTTCTGCCCATTTAATTGACAATCAGaaaggcagggcgaaaa
gtgggggCGTCTAAATCTAAGTTAATACATTTATAAACCTATCCGAAGTC
GTTGCATGGAATTTCTAACAGATAcagaccacagatatcttacataaaac
actagatagagctactccgtccctatttgaatcaaaataatccaCCATCT
TTAATAAGTGGACCATAGTTCAGTGCCGGCAATTTGATTGATCAAGCCCT
CGTCGCTTCGCgccatttagattttttttgcttggctgaacaaattgccg
gcaccgaactgtgacctactttcagcaaaggtgccgcattattttgcttc
acctcCCTTGCTTGGgaaaatacagagtagctctatctagtgttttattt
AAGATATCTATGATACAGACTTTTTCCGACATTTCTTCCTTGTAAGCTCT
GATCTAGTCTCTTCATTCTTTGTATTGTGGTCAATTATTTAATTGTCTAA
GATATTCGTAATTATGTACCTGGTTTTCCTTTCAATTTTCAGGGCCCTGG
TTTCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043770XLOC_043770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070287-exon-scaffold_52-1491911889:23522..23744TCONS_00070287-exon-scaffold_52-1491911889:23522..23744Clytia hemisphaericaexon
TCONS_00070287-exon-scaffold_52-1510915933:23522..23744TCONS_00070287-exon-scaffold_52-1510915933:23522..23744Clytia hemisphaericaexon
TCONS_00070287-exon-scaffold_52-1575043694:23522..23744TCONS_00070287-exon-scaffold_52-1575043694:23522..23744Clytia hemisphaericaexon
TCONS_00070287-exon-scaffold_52-1491911889:24464..24478TCONS_00070287-exon-scaffold_52-1491911889:24464..24478Clytia hemisphaericaexon
TCONS_00070287-exon-scaffold_52-1510915933:24464..24478TCONS_00070287-exon-scaffold_52-1510915933:24464..24478Clytia hemisphaericaexon
TCONS_00070287-exon-scaffold_52-1575043694:24464..24478TCONS_00070287-exon-scaffold_52-1575043694:24464..24478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:23522..24478 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.0042	8.15216	6.31029	2.05788	21.2948	14.8477	20.3016	33.5402	7.04468	6.78686	7.52857	7.42348	11.1197	23.0959	15.8233	24.3392	20.919	15.7236	12.8363	8.26603	12.5732	14.4558	22.3655	18.397	30.9159	23.1414	5.09467	2.71858	13.4027	15.756
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070287 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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