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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070283 ID=TCONS_00070283|Name=TCONS_00070283|organism=Clytia hemisphaerica|type=transcript|length=3132bp
gtgaaaataaaataaagaaatagaaagaTGTTAATTATTGCATATGGAGT
GACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGGC
AAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc
caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT
ACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGATC
CTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTTT
GGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGTG
CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc
ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT
AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA
AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA
CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG
TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT
ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA
ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT
CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT
GTTCGAAAGTGTCATGtacatttttgtgtttttatggACACCAGTTTTGC
TGCCAGCTGAACCCCCCCTTGGTGTTGTGTTTGCTTCTTTTATGTGCTCT
ATATGGATCGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa
aacGACAACAATCNCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc
caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT
ACAAGGACCGTATTTATATAAATTATATCATGATTATGGTTTTGTTGATC
CTTTCATTGGAATTATTTATGTTTGCGGGTTTGTATCGAGTATTGTTTTT
GGTACCTACACTGGTATACTTACTGACCGGCTTGGTAGGAAAAAGGTGTG
CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc
ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT
AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA
AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA
CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG
TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT
ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA
ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT
CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT
GTTCGAAAGTGTCATGtacatttttgtgtttttatggACGCCAGTTTTGC
TGCCAGCTGAACCACCTCTTGGTGTCGTGTTTGCTTCTTTTATGTGCTCT
ATATGGATTGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa
aatgacgacaattgtttgttttgttgtCTATGGAGTCATGTTTGCTAATG
GTGGAGCAGCTTTTGCTAGTGCTAATCATCCCCGTACCTcgtatttatta
tttttagtgATTGAACTACTTTGTGGTATATACTTCCCAGCTATGGGTTA
CCTGAGAACCAAAGTGTTGCCAGCTGCACATCATGCTGTTATAATGAACT
GGTTTCGTGTACCGTTGAACGTGATTGCAAGTATAGTGTTATTGGTGTTA
CACGATAGTCATAGCCCACACGGTATCACGCAAATGTTCACACTCTGCGC
ATGTCTCTTGATGGTTGGTGGTTTGTTTGCAACGTTATTGAAATTTACGG
TGAATGATAATGAAATGGATGCGAATACAGAAAATGAAGAATTGGCTTAG
ATTATCTCTtcaataaaactaaaattttcatttttcttagtTTATTCTGA
TCAAAACAGGATCCTGACTAACTATCAACAAAGTTAACTTATTTGAGAAT
AAGTGGAGTTCCCTGCAAAGTTTTAAACCCCACAAAGGATTTTTAAAGTG
AAATTGCTTACTTCCatttccaaaatcgaaatatccaatgaaatatatag
aaattttgaaattgacattctcgcccAAACTTTGAATTCTGAAAACATTA
AAATTCCCCGAGATATTAATATATCAATctcaaccatgattgtagcttCT
CTTACTcgttaaattttcaaatgtcaaatgtcTTGTTGTGGTGAGTCTAA
GGGTGTATTAGGATTTTATTTGGCAATTGAACTTAAAATAATGTTTTATA
CATCTAAATCTTTTTTCCGTGGAGAACATAATTAGATATTCTAATAGGTG
ACtgtcattttttattattattctttGTATAGAGACAGAATCATTGGTAG
TTTTAGGAGGGGGTACagccgcagggtactaacccatagggtactaaccc
TGATTTACAGAAATATTTGTGTAAGGTACcaccaccccctttttagtacc
TGGCACCTacttttttgaggaaaaagggAATTGGCAAAACTTATATTGTG
ACTTGCCAAAATCGATAAATTTATACCCATTTTAGTTTACCAACTAAATA
CCGATATTAACACTACTTGAAAGAAATGTGATAAATTTAGTatcgggtac
taacttttttgagattcaaaGTTAGACACCGCCACATGGGTCAGTACTCT
GCGGCTGTACCCTCCCCCCTggtagttttattttttattgaatattaaaa
tctcaaaaatagtataaaaaattttaatcaaatattttatttattctttt
agCAGAAAATATATCCATAGTAATTTGTAGTG Run BLAST on NCBI transcript from alignment at scaffold_52:9187..12318+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070283 ID=TCONS_00070283|Name=TCONS_00070283|organism=Clytia hemisphaerica|type=transcript|length=3132bp|location=Sequence derived from alignment at scaffold_52:9187..12318+ (Clytia hemisphaerica)
gtgaaaataaaataaagaaatagaaagaTGTTAATTATTGCATATGGAGT
GACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGGC
AAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc
caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT
ACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGATC
CTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTTT
GGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGTG
CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc
ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT
AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA
AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA
CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG
TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT
ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA
ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT
CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT
GTTCGAAAGTGTCATGtacatttttgtgtttttatggACACCAGTTTTGC
TGCCAGCTGAACCCCCCCTTGGTGTTGTGTTTGCTTCTTTTATGTGCTCT
ATATGGATCGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa
aacGACAACAATCNCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc
caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT
ACAAGGACCGTATTTATATAAATTATATCATGATTATGGTTTTGTTGATC
CTTTCATTGGAATTATTTATGTTTGCGGGTTTGTATCGAGTATTGTTTTT
GGTACCTACACTGGTATACTTACTGACCGGCTTGGTAGGAAAAAGGTGTG
CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc
ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT
AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA
AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA
CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG
TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT
ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA
ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT
CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT
GTTCGAAAGTGTCATGtacatttttgtgtttttatggACGCCAGTTTTGC
TGCCAGCTGAACCACCTCTTGGTGTCGTGTTTGCTTCTTTTATGTGCTCT
ATATGGATTGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa
aatgacgacaattgtttgttttgttgtCTATGGAGTCATGTTTGCTAATG
GTGGAGCAGCTTTTGCTAGTGCTAATCATCCCCGTACCTcgtatttatta
tttttagtgATTGAACTACTTTGTGGTATATACTTCCCAGCTATGGGTTA
CCTGAGAACCAAAGTGTTGCCAGCTGCACATCATGCTGTTATAATGAACT
GGTTTCGTGTACCGTTGAACGTGATTGCAAGTATAGTGTTATTGGTGTTA
CACGATAGTCATAGCCCACACGGTATCACGCAAATGTTCACACTCTGCGC
ATGTCTCTTGATGGTTGGTGGTTTGTTTGCAACGTTATTGAAATTTACGG
TGAATGATAATGAAATGGATGCGAATACAGAAAATGAAGAATTGGCTTAG
ATTATCTCTtcaataaaactaaaattttcatttttcttagtTTATTCTGA
TCAAAACAGGATCCTGACTAACTATCAACAAAGTTAACTTATTTGAGAAT
AAGTGGAGTTCCCTGCAAAGTTTTAAACCCCACAAAGGATTTTTAAAGTG
AAATTGCTTACTTCCatttccaaaatcgaaatatccaatgaaatatatag
aaattttgaaattgacattctcgcccAAACTTTGAATTCTGAAAACATTA
AAATTCCCCGAGATATTAATATATCAATctcaaccatgattgtagcttCT
CTTACTcgttaaattttcaaatgtcaaatgtcTTGTTGTGGTGAGTCTAA
GGGTGTATTAGGATTTTATTTGGCAATTGAACTTAAAATAATGTTTTATA
CATCTAAATCTTTTTTCCGTGGAGAACATAATTAGATATTCTAATAGGTG
ACtgtcattttttattattattctttGTATAGAGACAGAATCATTGGTAG
TTTTAGGAGGGGGTACagccgcagggtactaacccatagggtactaaccc
TGATTTACAGAAATATTTGTGTAAGGTACcaccaccccctttttagtacc
TGGCACCTacttttttgaggaaaaagggAATTGGCAAAACTTATATTGTG
ACTTGCCAAAATCGATAAATTTATACCCATTTTAGTTTACCAACTAAATA
CCGATATTAACACTACTTGAAAGAAATGTGATAAATTTAGTatcgggtac
taacttttttgagattcaaaGTTAGACACCGCCACATGGGTCAGTACTCT
GCGGCTGTACCCTCCCCCCTggtagttttattttttattgaatattaaaa
tctcaaaaatagtataaaaaattttaatcaaatattttatttattctttt
agCAGAAAATATATCCATAGTAATTTGTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070283-exon-scaffold_52-1491911889:9187..12318 | TCONS_00070283-exon-scaffold_52-1491911889:9187..12318 | Clytia hemisphaerica | exon |
| TCONS_00070283-exon-scaffold_52-1510915933:9187..12318 | TCONS_00070283-exon-scaffold_52-1510915933:9187..12318 | Clytia hemisphaerica | exon |
| TCONS_00070283-exon-scaffold_52-1575043694:9187..12318 | TCONS_00070283-exon-scaffold_52-1575043694:9187..12318 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_52 | supercontig | scaffold_52:9187..12318 + |
Blast
BLAST of TCONS_00070283 vs. Swiss-Prot (Human)
Match: MFSD5 (Molybdate-anion transporter OS=Homo sapiens GN=MFSD5 PE=1 SV=2) HSP 1 Score: 358.607 bits (919), Expect = 3.812e-112 Identity = 190/412 (46.12%), Postives = 273/412 (66.26%), Query Frame = 2
Query: 977 NNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKKVCVLFTILYSICCFTKLSHNFFVLCLGRVLGGVSTSLLFSAFDSWYMFEHTQAYQFPTEWMDVTFSKATFYNSVIAITAGFIANLLSEWLQFGPVAPFLFAIPFLVVAGALIQVTWSENHGRSGQACKGCFEGLRLIVMNRGIFLIGAVQAMFESVMYIFVFLWTPVLLPAEPPLGVVFASFMCSIWIGGSLFEHLVARKYKMT-----TIVCFVVYGVMXXXXXXXXXXXXHPRTSYLLFLVIELLCGIYFPAMGYLRTKVLPAAHHAVIMNWFRVPLNVIASIVLLVLHDSHSPHGITQMFTLCACLLMVGGLFATLLKFTV--NDNEMDANTENEE 2191
+NP+F+ FQ +++VYFLAL A+WLQ PYLYKLY Y F++ I I+YVCG S+++FG L D LGRK CVLF++ YS+CC TKLS ++FVL +GR LGG+ST+LLFSAF++WY+ EH + + FP EW+ TF++A F+N V+A+ AG A ++ W+ GPVAPF+ AIP L +AGAL W EN+ R + C GLR ++ +R + L+G +QA+FESV++IFVFLWTPVL P PLG++F+SFM + +G SL+ +++Y + ++ +V +F + P S++ FL+IEL CG+YFP+M +LR KV+P A ++NWFRVPL+ +A + LLVLHDS G MF++C+ +MV L A + FTV +D E+ + EE
Sbjct: 34 SNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYHLQPMHLLSLAVLIVVFSLFMLTFSTSPGQESPVESFIAFLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLACLGLLVLHDSDRKTGTRNMFSICSA-VMVMALLAVVGLFTVVRHDAELRVPSPTEE 444 HSP 2 Score: 279.256 bits (713), Expect = 5.368e-83 Identity = 148/308 (48.05%), Postives = 207/308 (67.21%), Query Frame = 1
Query: 28 MLIIAYGVTSILLVIGLVLGFRLWQGKKNQVVINNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKKVCVLFTILYSICCFTKLSHNFFVLCLGRVLGGVSTSLLFSAFDSWYMFEHTQAYQFPTEWMDVTFSKATFYNSVIAITAGFIANLLSEWLQFGPVAPFLFAIPFLVVAGALIQVTWSENHGRSGQACKGCFEGLRLIVMNRGIFLIGAVQAMFESVMYIFVFLWTPVLLPAEPPLGVVFASFMCSIWIGGSLFEHLVARKYK 951
ML+ AY LL L L + K +NP+F+ FQ +++VYFLAL A+WLQ PYLYKLY Y F++ I I+YVCG S+++FG L D LGRK CVLF++ YS+CC TKLS ++FVL +GR LGG+ST+LLFSAF++WY+ EH + + FP EW+ TF++A F+N V+A+ AG A ++ W+ GPVAPF+ AIP L +AGAL W EN+ R + C GLR ++ +R + L+G +QA+FESV++IFVFLWTPVL P PLG++F+SFM + +G SL+ +++Y
Sbjct: 1 MLVTAYLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYH 308
The following BLAST results are available for this feature:
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