TCONS_00070283 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070283
Unique NameTCONS_00070283
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3132

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070283 ID=TCONS_00070283|Name=TCONS_00070283|organism=Clytia hemisphaerica|type=transcript|length=3132bp
gtgaaaataaaataaagaaatagaaagaTGTTAATTATTGCATATGGAGT
GACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGGC
AAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc
caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT
ACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGATC
CTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTTT
GGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGTG
CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc
ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT
AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA
AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA
CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG
TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT
ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA
ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT
CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT
GTTCGAAAGTGTCATGtacatttttgtgtttttatggACACCAGTTTTGC
TGCCAGCTGAACCCCCCCTTGGTGTTGTGTTTGCTTCTTTTATGTGCTCT
ATATGGATCGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa
aacGACAACAATCNCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc
caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT
ACAAGGACCGTATTTATATAAATTATATCATGATTATGGTTTTGTTGATC
CTTTCATTGGAATTATTTATGTTTGCGGGTTTGTATCGAGTATTGTTTTT
GGTACCTACACTGGTATACTTACTGACCGGCTTGGTAGGAAAAAGGTGTG
CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc
ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT
AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA
AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA
CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG
TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT
ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA
ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT
CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT
GTTCGAAAGTGTCATGtacatttttgtgtttttatggACGCCAGTTTTGC
TGCCAGCTGAACCACCTCTTGGTGTCGTGTTTGCTTCTTTTATGTGCTCT
ATATGGATTGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa
aatgacgacaattgtttgttttgttgtCTATGGAGTCATGTTTGCTAATG
GTGGAGCAGCTTTTGCTAGTGCTAATCATCCCCGTACCTcgtatttatta
tttttagtgATTGAACTACTTTGTGGTATATACTTCCCAGCTATGGGTTA
CCTGAGAACCAAAGTGTTGCCAGCTGCACATCATGCTGTTATAATGAACT
GGTTTCGTGTACCGTTGAACGTGATTGCAAGTATAGTGTTATTGGTGTTA
CACGATAGTCATAGCCCACACGGTATCACGCAAATGTTCACACTCTGCGC
ATGTCTCTTGATGGTTGGTGGTTTGTTTGCAACGTTATTGAAATTTACGG
TGAATGATAATGAAATGGATGCGAATACAGAAAATGAAGAATTGGCTTAG
ATTATCTCTtcaataaaactaaaattttcatttttcttagtTTATTCTGA
TCAAAACAGGATCCTGACTAACTATCAACAAAGTTAACTTATTTGAGAAT
AAGTGGAGTTCCCTGCAAAGTTTTAAACCCCACAAAGGATTTTTAAAGTG
AAATTGCTTACTTCCatttccaaaatcgaaatatccaatgaaatatatag
aaattttgaaattgacattctcgcccAAACTTTGAATTCTGAAAACATTA
AAATTCCCCGAGATATTAATATATCAATctcaaccatgattgtagcttCT
CTTACTcgttaaattttcaaatgtcaaatgtcTTGTTGTGGTGAGTCTAA
GGGTGTATTAGGATTTTATTTGGCAATTGAACTTAAAATAATGTTTTATA
CATCTAAATCTTTTTTCCGTGGAGAACATAATTAGATATTCTAATAGGTG
ACtgtcattttttattattattctttGTATAGAGACAGAATCATTGGTAG
TTTTAGGAGGGGGTACagccgcagggtactaacccatagggtactaaccc
TGATTTACAGAAATATTTGTGTAAGGTACcaccaccccctttttagtacc
TGGCACCTacttttttgaggaaaaagggAATTGGCAAAACTTATATTGTG
ACTTGCCAAAATCGATAAATTTATACCCATTTTAGTTTACCAACTAAATA
CCGATATTAACACTACTTGAAAGAAATGTGATAAATTTAGTatcgggtac
taacttttttgagattcaaaGTTAGACACCGCCACATGGGTCAGTACTCT
GCGGCTGTACCCTCCCCCCTggtagttttattttttattgaatattaaaa
tctcaaaaatagtataaaaaattttaatcaaatattttatttattctttt
agCAGAAAATATATCCATAGTAATTTGTAGTG
Run BLAST on NCBI

transcript from alignment at scaffold_52:9187..12318+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070283 ID=TCONS_00070283|Name=TCONS_00070283|organism=Clytia hemisphaerica|type=transcript|length=3132bp|location=Sequence derived from alignment at scaffold_52:9187..12318+ (Clytia hemisphaerica)
gtgaaaataaaataaagaaatagaaagaTGTTAATTATTGCATATGGAGT GACATCTATATTACTGGTAATTGGGCTTGTGCTTGGGTTTCGATTATGGC AAGGAAAGAAGAACCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT ACAAGGACCGTATTTATATAAATTGTATCATGATTATGGTTTTGTTGATC CTTTCATTGGGATTATTTATGTTTGCGGGTTTGTATCAAGTATTGTTTTT GGTACATACACTGGTATACTTACTGACCGACTTGGTAGGAAAAAGGTGTG CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT GTTCGAAAGTGTCATGtacatttttgtgtttttatggACACCAGTTTTGC TGCCAGCTGAACCCCCCCTTGGTGTTGTGTTTGCTTCTTTTATGTGCTCT ATATGGATCGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa aacGACAACAATCNCAAGTTGTTATCAACAATCCAGCCTTTGtcaatttc caacaaaaataTTTCCGTGTTTATTTCCTTGCATTATTAGCTGAATGGCT ACAAGGACCGTATTTATATAAATTATATCATGATTATGGTTTTGTTGATC CTTTCATTGGAATTATTTATGTTTGCGGGTTTGTATCGAGTATTGTTTTT GGTACCTACACTGGTATACTTACTGACCGGCTTGGTAGGAAAAAGGTGTG CGTATTGTTTACTATTTTGTATTCAATATGCTGCTTTACAAAGCtttctc ataatttttttgtattatgTCTTGGAAGAGTACTAGGTGGAGTATCAACT AGTTTACTCTTTTCTGCATTTGATTCTTGGTATATGTTTGAGCATACACA AGCTTATCAGTTCCCTACAGAATGGATGGATGTCACTTTCTCAAAAGCTA CCTTTTATAACAGTGTTATTGCAATCACAGCTGGCTTTATTGCTAATTTG TTATCTGAATGGCTTCAATTTGGACCAGTTGCACCATTTTTATTTGCAAT ACCTTTTCTTGTTGTGGCTGGAGCACTGATTCAAGTCACCTGGTCTGAGA ATCATGGAAGATCTGGCCAAGCTTGTAAAGGCTGTTTTGAAGGACTACGT CTCATTGTTATGAATCGTGGTATCTTCCTTATCGGTGCTGTTCAAGCAAT GTTCGAAAGTGTCATGtacatttttgtgtttttatggACGCCAGTTTTGC TGCCAGCTGAACCACCTCTTGGTGTCGTGTTTGCTTCTTTTATGTGCTCT ATATGGATTGGAGGAAGCTTATTTGAACATCTTGtagcaagaaaatataa aatgacgacaattgtttgttttgttgtCTATGGAGTCATGTTTGCTAATG GTGGAGCAGCTTTTGCTAGTGCTAATCATCCCCGTACCTcgtatttatta tttttagtgATTGAACTACTTTGTGGTATATACTTCCCAGCTATGGGTTA CCTGAGAACCAAAGTGTTGCCAGCTGCACATCATGCTGTTATAATGAACT GGTTTCGTGTACCGTTGAACGTGATTGCAAGTATAGTGTTATTGGTGTTA CACGATAGTCATAGCCCACACGGTATCACGCAAATGTTCACACTCTGCGC ATGTCTCTTGATGGTTGGTGGTTTGTTTGCAACGTTATTGAAATTTACGG TGAATGATAATGAAATGGATGCGAATACAGAAAATGAAGAATTGGCTTAG ATTATCTCTtcaataaaactaaaattttcatttttcttagtTTATTCTGA TCAAAACAGGATCCTGACTAACTATCAACAAAGTTAACTTATTTGAGAAT AAGTGGAGTTCCCTGCAAAGTTTTAAACCCCACAAAGGATTTTTAAAGTG AAATTGCTTACTTCCatttccaaaatcgaaatatccaatgaaatatatag aaattttgaaattgacattctcgcccAAACTTTGAATTCTGAAAACATTA AAATTCCCCGAGATATTAATATATCAATctcaaccatgattgtagcttCT CTTACTcgttaaattttcaaatgtcaaatgtcTTGTTGTGGTGAGTCTAA GGGTGTATTAGGATTTTATTTGGCAATTGAACTTAAAATAATGTTTTATA CATCTAAATCTTTTTTCCGTGGAGAACATAATTAGATATTCTAATAGGTG ACtgtcattttttattattattctttGTATAGAGACAGAATCATTGGTAG TTTTAGGAGGGGGTACagccgcagggtactaacccatagggtactaaccc TGATTTACAGAAATATTTGTGTAAGGTACcaccaccccctttttagtacc TGGCACCTacttttttgaggaaaaagggAATTGGCAAAACTTATATTGTG ACTTGCCAAAATCGATAAATTTATACCCATTTTAGTTTACCAACTAAATA CCGATATTAACACTACTTGAAAGAAATGTGATAAATTTAGTatcgggtac taacttttttgagattcaaaGTTAGACACCGCCACATGGGTCAGTACTCT GCGGCTGTACCCTCCCCCCTggtagttttattttttattgaatattaaaa tctcaaaaatagtataaaaaattttaatcaaatattttatttattctttt agCAGAAAATATATCCATAGTAATTTGTAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043767XLOC_043767Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070283-exon-scaffold_52-1491911889:9187..12318TCONS_00070283-exon-scaffold_52-1491911889:9187..12318Clytia hemisphaericaexon
TCONS_00070283-exon-scaffold_52-1510915933:9187..12318TCONS_00070283-exon-scaffold_52-1510915933:9187..12318Clytia hemisphaericaexon
TCONS_00070283-exon-scaffold_52-1575043694:9187..12318TCONS_00070283-exon-scaffold_52-1575043694:9187..12318Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_52supercontigscaffold_52:9187..12318 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.0326 0.691119 1.94727 2.08832 7.73391e-10 1.18619e-08 0 9.26996e-09 1.76073 1.47747 1.27722 1.39206 0.990146 1.74471 0.989709 1.54922 2.32149 1.17999 0.599946 0.721255 2.31255 2.1831 1.8728 1.21416 0.464936 0.634536 2.19656 1.375 2.0531 1.60304
Blast
BLAST of TCONS_00070283 vs. Swiss-Prot (Human)
Match: MFSD5 (Molybdate-anion transporter OS=Homo sapiens GN=MFSD5 PE=1 SV=2)

HSP 1 Score: 358.607 bits (919), Expect = 3.812e-112
Identity = 190/412 (46.12%), Postives = 273/412 (66.26%), Query Frame = 2
Query:  977 NNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKKVCVLFTILYSICCFTKLSHNFFVLCLGRVLGGVSTSLLFSAFDSWYMFEHTQAYQFPTEWMDVTFSKATFYNSVIAITAGFIANLLSEWLQFGPVAPFLFAIPFLVVAGALIQVTWSENHGRSGQACKGCFEGLRLIVMNRGIFLIGAVQAMFESVMYIFVFLWTPVLLPAEPPLGVVFASFMCSIWIGGSLFEHLVARKYKMT-----TIVCFVVYGVMXXXXXXXXXXXXHPRTSYLLFLVIELLCGIYFPAMGYLRTKVLPAAHHAVIMNWFRVPLNVIASIVLLVLHDSHSPHGITQMFTLCACLLMVGGLFATLLKFTV--NDNEMDANTENEE 2191
            +NP+F+ FQ  +++VYFLAL A+WLQ PYLYKLY  Y F++  I I+YVCG  S+++FG     L D LGRK  CVLF++ YS+CC TKLS ++FVL +GR LGG+ST+LLFSAF++WY+ EH + + FP EW+  TF++A F+N V+A+ AG  A  ++ W+  GPVAPF+ AIP L +AGAL    W EN+ R     + C  GLR ++ +R + L+G +QA+FESV++IFVFLWTPVL P   PLG++F+SFM +  +G SL+    +++Y +      ++   +V   +F    +       P  S++ FL+IEL CG+YFP+M +LR KV+P    A ++NWFRVPL+ +A + LLVLHDS    G   MF++C+  +MV  L A +  FTV  +D E+   +  EE
Sbjct:   34 SNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYHLQPMHLLSLAVLIVVFSLFMLTFSTSPGQESPVESFIAFLLIELACGLYFPSMSFLRRKVIPETEQAGVLNWFRVPLHSLACLGLLVLHDSDRKTGTRNMFSICSA-VMVMALLAVVGLFTVVRHDAELRVPSPTEE 444          

HSP 2 Score: 279.256 bits (713), Expect = 5.368e-83
Identity = 148/308 (48.05%), Postives = 207/308 (67.21%), Query Frame = 1
Query:   28 MLIIAYGVTSILLVIGLVLGFRLWQGKKNQVVINNPAFVNFQQKYFRVYFLALLAEWLQGPYLYKLYHDYGFVDPFIGIIYVCGFVSSIVFGTYTGILTDRLGRKKVCVLFTILYSICCFTKLSHNFFVLCLGRVLGGVSTSLLFSAFDSWYMFEHTQAYQFPTEWMDVTFSKATFYNSVIAITAGFIANLLSEWLQFGPVAPFLFAIPFLVVAGALIQVTWSENHGRSGQACKGCFEGLRLIVMNRGIFLIGAVQAMFESVMYIFVFLWTPVLLPAEPPLGVVFASFMCSIWIGGSLFEHLVARKYK 951
            ML+ AY     LL   L L     + K      +NP+F+ FQ  +++VYFLAL A+WLQ PYLYKLY  Y F++  I I+YVCG  S+++FG     L D LGRK  CVLF++ YS+CC TKLS ++FVL +GR LGG+ST+LLFSAF++WY+ EH + + FP EW+  TF++A F+N V+A+ AG  A  ++ W+  GPVAPF+ AIP L +AGAL    W EN+ R     + C  GLR ++ +R + L+G +QA+FESV++IFVFLWTPVL P   PLG++F+SFM +  +G SL+    +++Y 
Sbjct:    1 MLVTAYLAFVGLLASCLGLELSRCRAKPPGRACSNPSFLRFQLDFYQVYFLALAADWLQAPYLYKLYQHYYFLEGQIAILYVCGLASTVLFGLVASSLVDWLGRKNSCVLFSLTYSLCCLTKLSQDYFVLLVGRALGGLSTALLFSAFEAWYIHEHVERHDFPAEWIPATFARAAFWNHVLAVVAGVAAEAVASWIGLGPVAPFVAAIPLLALAGALALRNWGENYDRQRAFSRTCAGGLRCLLSDRRVLLLGTIQALFESVIFIFVFLWTPVLDPHGAPLGIIFSSFMAASLLGSSLYRIATSKRYH 308          
The following BLAST results are available for this feature:
BLAST of TCONS_00070283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MFSD53.812e-11246.12Molybdate-anion transporter OS=Homo sapiens GN=MFS... [more]
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