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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070240 ID=TCONS_00070240|Name=TCONS_00070240|organism=Clytia hemisphaerica|type=transcript|length=1644bp
gttattttcatgtatttgagcaaaatatccaaaaattggcaaaatctgaG
GATATCACTTCCTCGACCTGCCTGAttcttacagaaaatggctcAAGTGT
CTGTTGAGGCATCATGAGAGAGAAAATTTGAACTCAAATGAAATCATAAG
TCAAATATTCAATTCAAGTCTtcaaatcaaactttcaaatcaaatttcaa
actcaattttGATTCTACTTTCATGGACAGAACATTTACACCACATATAT
TTCTGGCAAGTTGtttGAACTCCATCATCAAAAGTTACGAACACTTGTGT
CTATTCATTTTCTGTTCGTCTACACCACGAGGCTGTATGAAGCAGGGATT
CAGAGCCGCCGGACGCCTGTCAATACTTCGAACGAATCCTGGGGGGTTTC
AGGGAGAGCTGTTGTGATATAAGAGTAGACAGTTTAAAGAATAACAAAAG
GTTTGGTTGTTCCAGCTGGTTCGAATTCTTAACGGCGTAATCAAAAGCCA
TCGATGCGAAAGCTGAGTCGACAAAACTGGCCTCTTATGGAGTCACTGGT
TTAATGGTTACGTTTGGTTATGCTGTATTACTGCTCTCTTCAGCCCTTGc
caccgacaaaatttcttcctatgcttacctaactcctacgctcacttttc
ccacGTGATACCGTTTCAGCCCGAATGGCGTGCATGCCAGTCTAACGAAA
TCCTTGTTCCTGATCCAACAGCACGACACCACTTGATTCTGTATGTACAA
TTGCTATCACGAATTTTACAAAACACTAAGCCCACTTGCAATGCTCTATA
ATAAATTGATCCCGTCGAATGTTTGGAATGTTTTTAGAAGAAACAGAATA
GAagctttattttaatttttgaaaacttgaaatttatttaaacGTTCACT
CACCCCGGGaaggagggggtacttaggtaaAATGGGTTCTGGGTATGTAC
GAGCCAGGTACCGGGtaccagaggccaagttttcatcaGAGAAAATGTTG
ACATTTATTCAAGCTCAACCatgtccccgtgtatcccaggcttttgtacg
ttactgattgaccgCCAGAAAGTACCCtcgtgttggctgatgcgagctTC
CCCTTTCAGAAGAGGGGGACTTCTCAAAACGATAGGTATCATAAAATATT
CTGACGTTATACTGGAATGATTACACAGACAATGTATATCTATAGGGTAT
ATCTAACTAGCAAGCACCTAACTAAAAACCAGGATTTTACATCTCGtctc
ttagtgagttccactttgacaattttcaaaaaatagaagcctttcaagtg
ctttgatgCAAATTCGATTTAAGCATCCagcgaggacctttttttaaaca
tctgtttcccaggcataaccttcctggaaaatttgatctgctGACCAAAA
GCATcgaaaatcttattcctagaaatgaagatctgtttctcctcgaaacc
taaatttttagtaTTTAGTATTTTAAAGtatcttccctagaaaatttggt
ctgacaattttcagaattaaaattttgatctgttctcccgggttggtcta
aaaagcagggtagccaattggggtagccaattgggctaggttgtggggta
cctaaatattttacagaccagaatagaaataccgaaaatgaatg Run BLAST on NCBI transcript from alignment at scaffold_516:195312..197089- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070240 ID=TCONS_00070240|Name=TCONS_00070240|organism=Clytia hemisphaerica|type=transcript|length=1778bp|location=Sequence derived from alignment at scaffold_516:195312..197089- (Clytia hemisphaerica)
GTTATTTTCATGTATTTGAGCAAAATATCCAAAAATTGGCAAAATCTGAG
GATATCACTTCCTCGACCTGCCTGATTCTTACAGAAAATGGCTCAAGTGT
CTGTTGAGGCATCATGAGAGAGAAAATTTGAACTCAAATGAAATCATAAG
TCAAATATTCAATTCAAGTCTTCAAATCAAACTTTCAAATCAAATTTCAA
ACTCAATTTTGATTCTACTTTCATGGACAGAACATTTACACCACATATAT
TTCTGGCAAGTTGGTAAGAATTCATTTAATTTATTAACTTAGATTTCTTT
TATTTTCCTCTAAAATACTTTGTCAATATTTTCATTATTCTTCATTTGTC
TCACTTTGTCACATAGATTAAATCTTGTCATTTTTTTATTCATTCAGTTT
GAACTCCATCATCAAAAGTTACGAACACTTGTGTCTATTCATTTTCTGTT
CGTCTACACCACGAGGCTGTATGAAGCAGGGATTCAGAGCCGCCGGACGC
CTGTCAATACTTCGAACGAATCCTGGGGGGTTTCAGGGAGAGCTGTTGTG
ATATAAGAGTAGACAGTTTAAAGAATAACAAAAGGTTTGGTTGTTCCAGC
TGGTTCGAATTCTTAACGGCGTAATCAAAAGCCATCGATGCGAAAGCTGA
GTCGACAAAACTGGCCTCTTATGGAGTCACTGGTTTAATGGTTACGTTTG
GTTATGCTGTATTACTGCTCTCTTCAGCCCTTGCCACCGACAAAATTTCT
TCCTATGCTTACCTAACTCCTACGCTCACTTTTCCCACGTGATACCGTTT
CAGCCCGAATGGCGTGCATGCCAGTCTAACGAAATCCTTGTTCCTGATCC
AACAGCACGACACCACTTGATTCTGTATGTACAATTGCTATCACGAATTT
TACAAAACACTAAGCCCACTTGCAATGCTCTATAATAAATTGATCCCGTC
GAATGTTTGGAATGTTTTTAGAAGAAACAGAATAGAAGCTTTATTTTAAT
TTTTGAAAACTTGAAATTTATTTAAACGTTCACTCACCCCGGGAAGGAGG
GGGTACTTAGGTAAAATGGGTTCTGGGTATGTACGAGCCAGGTACCGGGT
ACCAGAGGCCAAGTTTTCATCAGAGAAAATGTTGACATTTATTCAAGCTC
AACCATGTCCCCGTGTATCCCAGGCTTTTGTACGTTACTGATTGACCGCC
AGAAAGTACCCTCGTGTTGGCTGATGCGAGCTTCCCCTTTCAGAAGAGGG
GGACTTCTCAAAACGATAGGTATCATAAAATATTCTGACGTTATACTGGA
ATGATTACACAGACAATGTATATCTATAGGGTATATCTAACTAGCAAGCA
CCTAACTAAAAACCAGGATTTTACATCTCGTCTCTTAGTGAGTTCCACTT
TGACAATTTTCAAAAAATAGAAGCCTTTCAAGTGCTTTGATGCAAATTCG
ATTTAAGCATCCAGCGAGGACCTTTTTTTAAACATCTGTTTCCCAGGCAT
AACCTTCCTGGAAAATTTGATCTGCTGACCAAAAGCATCGAAAATCTTAT
TCCTAGAAATGAAGATCTGTTTCTCCTCGAAACCTAAATTTTTAGTATTT
AGTATTTTAAAGTATCTTCCCTAGAAAATTTGGTCTGACAATTTTCAGAA
TTAAAATTTTGATCTGTTCTCCCGGGTTGGTCTAAAAAGCAGGGTAGCCA
ATTGGGGTAGCCAATTGGGCTAGGTTGTGGGGTACCTAAATATTTTACAG
ACCAGAATAGAAATACCGAAAATGAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070240-exon-scaffold_516-1575043694:196827..197089 | TCONS_00070240-exon-scaffold_516-1575043694:196827..197089 | Clytia hemisphaerica | exon |
| TCONS_00070240-exon-scaffold_516-1575043694:195312..196692 | TCONS_00070240-exon-scaffold_516-1575043694:195312..196692 | Clytia hemisphaerica | exon |
| TCONS_00070240-exon-scaffold_516-1510915933:196827..197089 | TCONS_00070240-exon-scaffold_516-1510915933:196827..197089 | Clytia hemisphaerica | exon |
| TCONS_00070240-exon-scaffold_516-1510915933:195312..196692 | TCONS_00070240-exon-scaffold_516-1510915933:195312..196692 | Clytia hemisphaerica | exon |
| TCONS_00070240-exon-scaffold_516-1491911889:196827..197089 | TCONS_00070240-exon-scaffold_516-1491911889:196827..197089 | Clytia hemisphaerica | exon |
| TCONS_00070240-exon-scaffold_516-1491911889:195312..196692 | TCONS_00070240-exon-scaffold_516-1491911889:195312..196692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:195312..197089 - |
Blast
The following BLAST results are available for this feature:
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