TCONS_00070229 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070229
Unique NameTCONS_00070229
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length537

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070229 ID=TCONS_00070229|Name=TCONS_00070229|organism=Clytia hemisphaerica|type=transcript|length=537bp
GGAAAAATATTCTTACCTAAACACACAACTCCTTGTGCTGCAAATCCAAC
GGGACACCGCTCGACGCACGTGCTGTTACCAAAAGGTCAAAGCAAGGGAG
ATGGATATGATACAAGGCATTACTTACCACGCACGAAGGGAACTTTCGGC
CGGATGCGGATCTTACGCTTGATGTTTCGAAACCAATGAGCATCGACCTC
GTTTTGGTGCAATTCCAAAAATACCAAACAGGCGATTAAAACCCATGAAA
AGTGCATTTTGACTGTGTATAAATTTTCTTGACTCTATCACTATCAAATA
CTTATGTAAgaatgaaagccaaaaatgaCAGTGCGAGCTTTTATTTAAAG
TTCTATTTTCCTGTGAACTTTATATTTGTGTGATTTTTGTCAATATGACG
TCAAGACTCAGTCTGTTTTTGTAGAGCTAATGaaaatttgttacttttta
taagaatcagaaCAAACTTAGGATATATTTAACATCGAAGTTAAAATTTG
TaatatgaagaaaattttaagaatttaaatATTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_516:89249..91614-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070229 ID=TCONS_00070229|Name=TCONS_00070229|organism=Clytia hemisphaerica|type=transcript|length=2366bp|location=Sequence derived from alignment at scaffold_516:89249..91614- (Clytia hemisphaerica)
GGAAAAATATTCTTACCTAAACACACAACTCCTTGTGCTGCAAATCCAAC
GGGACACCGCTCGACGCACGTGCTGTTACCAAAAGGTAAGACAAGTTTCC
GGTAACCTTCTGAACACATTGTGCAAAAAGTATCCTCGCAACCTTTTGGT
GGTGGTTTTGCTAAAAAAAAGATTTGATTTGCAATTTTTCAATTTTCTAA
AAATATTACCGAAAAAAATTCCCCTACTTTTGAAAATACCGTAAATTTCG
AGACAAAAATGCGTGAAAGCTTGCAATTTCAGAAAAAATATCAAATACTG
GGATGAGTAAAGCCTAATAAATATTATTATTTTTCTATACGGAAACTGCT
GAGGGCAAGTATGTCAATTATTTTCAAAGGAGATACCTGTTGTAGTTGTG
GTAGGCTGTGGTGTTGTTGTGGTAGGCTGTGGTGTTGTTGTAGTAGTCGT
TGCTGTTGTAGTGGTTGTCGTCTGTGTCGTCGGTGTTTCTGAGCTTGTAA
TTATGTTTGTTGTATCAGGTTGTTGTGTCGGAACATCTGTTGTTGATGTC
TCTTCTGTTGTCGACATGTCGGTCGTTATGTCGGTTGTGGGGAGAGGTGG
TGTCGGTACAATAGGTCTCGAGCATCGCACTACCCCATCTACGTTTTTCT
TCTCAAAACCCCGACTACATCTTCGTAGACAGAGTGTAGATCCCATGTAT
GTCCTTTGTAATGCAAGACCCCATTTACACTTGCTACATCTCCACAAATC
GTTTTCGCAGCGTTGGCAATTATTGACCAAGCATTCTAAGAATTAGATCA
AACTCAAGTAGTTATTTGAGGGGAGGTAGTATTGTGACTATCGACCTTTA
GCCCTTCAAAGAAAAGTGTAAGGTTTTCTCTTAAGATTTACTCAAACCTT
TATAACCCATGCTGTCTTTAGATCGCAAACTATCCAACAACTATATACTA
TAGACTCCTAGTTACTTACTCTCGCATCTAGGCATGCGTTCTCGATAACC
ACTCGGACATTTCCGGACACATTTTGAACGATATCGGGTAGCATCGAATA
TCCATTTATATGATGCGATGCATGTGTTGCAATATTGATCTGAACAACCC
TTTGGAATCACTGTAAGGAAAAATGAATAGTAAATCAGCTTACTTTCACT
AGGCGAACGGTCTAGACCTTATTGTTTTACTAAAAGATCTTCGGGTAGCA
TTGGGAGGCTTAAGCTTCTAGAAAGATCTGAAGATATCCTGCTTTTCATA
TAAACTGTGGTTCTGTTAAAAGGGATGTCATTTTAGCTATGGGAAGGCTT
GAGCTCGATTCAAGCTTTAATGTGTTAACGGCAGTAATTATCAATAATGA
TGAAATTTATAAAATCAGTTTAAGTATGAGACACGCTCCCGGCGTATTAT
TAGCTTTTGGCTGTATACTGATGATGTTCATCAACGTAAATAAAACCTCG
CATAAGTGTTCTTTCAAAAGTGAATTGTTGGCAACTGACCGACAGGTTTA
CAGTAATGTCCCCATCGAACGGAATATAGTTCTTGGTATCCAGTACTTGG
GCAACTGCGTACACATTTCACATAACGATTGTTCTCATCCACTATCGTTC
GATGATGGCGCATGCGACATAAACTTCCTATAAGACAAGTAAATTTTTAA
GAAATCACAAATTTGAAGGTTCAGAAATCCAATGATTGTATTTTCCTAGA
GCCATTCAAAATTTTGATTCAGATTTAATGAAATTTAGAGAGATCTCATA
TACAAACGAAGGGATGCGTGTAGCCTAGAAGGGAGGTGCCGTAAAAATGG
TTTAATCGTTGGAATAGGAATACCGAATCGAAGAAGAAAGGAACGGTCAG
CTCGACCTAGGAGGAGAAGGTTATAAGTTAAGATATGGATTCCCATTCTC
CTTTATTCTTTTAGGTCAAAGCAAGGGAGATGGATATGATACAAGGCATT
ACTTACCACGCACGAAGGGAACTTTCGGCCGGATGCGGATCTTACGCTTG
ATGTTTCGAAACCAATGAGCATCGACCTCGTTTTGGTGCAATTCCAAAAA
TACCAAACAGGCGATTAAAACCCATGAAAAGTGCATTTTGACTGTGTATA
AATTTTCTTGACTCTATCACTATCAAATACTTATGTAAGAATGAAAGCCA
AAAATGACAGTGCGAGCTTTTATTTAAAGTTCTATTTTCCTGTGAACTTT
ATATTTGTGTGATTTTTGTCAATATGACGTCAAGACTCAGTCTGTTTTTG
TAGAGCTAATGAAAATTTGTTACTTTTTATAAGAATCAGAACAAACTTAG
GATATATTTAACATCGAAGTTAAAATTTGTAATATGAAGAAAATTTTAAG
AATTTAAATATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043734XLOC_043734Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070229-exon-scaffold_516-1575043694:91530..91614TCONS_00070229-exon-scaffold_516-1575043694:91530..91614Clytia hemisphaericaexon
TCONS_00070229-exon-scaffold_516-1575043694:89249..89700TCONS_00070229-exon-scaffold_516-1575043694:89249..89700Clytia hemisphaericaexon
TCONS_00070229-exon-scaffold_516-1510915933:91530..91614TCONS_00070229-exon-scaffold_516-1510915933:91530..91614Clytia hemisphaericaexon
TCONS_00070229-exon-scaffold_516-1510915933:89249..89700TCONS_00070229-exon-scaffold_516-1510915933:89249..89700Clytia hemisphaericaexon
TCONS_00070229-exon-scaffold_516-1491911889:91530..91614TCONS_00070229-exon-scaffold_516-1491911889:91530..91614Clytia hemisphaericaexon
TCONS_00070229-exon-scaffold_516-1491911889:89249..89700TCONS_00070229-exon-scaffold_516-1491911889:89249..89700Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:89249..91614 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.0477	19.5834	12.2242	12.5069	0	0	0	0	1.28025	1.81554	0	0.803154	0.448693	0.474176	0.548723	0.225989	0.499251	0.846849	0	0.201063	0.358834	0.546231	2.79411	2.72553	0	0.126995	0.540232	0	0.784554	0.419115
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070229 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top