TCONS_00070224 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070224
Unique NameTCONS_00070224
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070224 ID=TCONS_00070224|Name=TCONS_00070224|organism=Clytia hemisphaerica|type=transcript|length=418bp
GGAAAATTCCACAATTTTGCATTATTTTACAGCTTGGAAAATTAAGGATA
ATTCAattaattgaaaaagaaatttcaggTAAATTGATAAAGTATTAAAC
AAACTGTCTTTGGTTACTTATTCTTTCGATTACATAAAGCCAGCATTTCA
ACCATTTTAAATTTGTGAGGTTATTAAGCGTACGCtagagtaaaaaaaat
tacatgctCATAACAATCCTATTGTCTATAAAGAACAAGTGGCGGAGAAA
CTTACTCTGGAGCCGGGACAATGTAAAGTCAATAATGGTGACCAACAAGC
CTTTATTCGGGACCTCCACATCCTTGCCACCAActttaatcttaaaatct
tctattttgGCTTGTATTCCCCGAATCAGGATATTTCCTTTTTTGAGGAT
CCGGTGCTCAAATTCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_516:549674..550167+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070224 ID=TCONS_00070224|Name=TCONS_00070224|organism=Clytia hemisphaerica|type=transcript|length=494bp|location=Sequence derived from alignment at scaffold_516:549674..550167+ (Clytia hemisphaerica)
GGAAAATTCCACAATTTTGCATTATTTTACAGCTTGGAAAATTAAGGATA
ATTCAattaattgaaaaagaaatttcaggTAAATTGATAAAGTATTAAAC
AAACTGTCTTTGGTTACTTATTCTTTCGATTACATAAAGCCAGCATTTCA
ACCATTTTAAATTTGTGAGGTTATTNTTGATAAAGTATTAAACAAACTGT
CTTTGGTTACTTATTCTTTCGATTACATAAAGCCAGCATTATGAGGTTAT
TAAGCGTACGCtagagtaaaaaaaattacatgctCATAACAATCCTATTG
TCTATAAAGAACAAGTGGCGGAGAAACTTACTCTGGAGCCGGGACAATGT
AAAGTCAATAATGGTGACCAACAAGCCTTTATTCGGGACCTCCACATCCT
TGCCACCAActttaatcttaaaatcttctattttgGCTTGTATTCCCCGA
ATCAGGATATTTCCTTTTTTGAGGATCCGGTGCTCAAATTCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043732XLOC_043732Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070224-exon-scaffold_516-1491911889:549674..549842TCONS_00070224-exon-scaffold_516-1491911889:549674..549842Clytia hemisphaericaexon
TCONS_00070224-exon-scaffold_516-1510915933:549674..549842TCONS_00070224-exon-scaffold_516-1510915933:549674..549842Clytia hemisphaericaexon
TCONS_00070224-exon-scaffold_516-1575043694:549674..549842TCONS_00070224-exon-scaffold_516-1575043694:549674..549842Clytia hemisphaericaexon
TCONS_00070224-exon-scaffold_516-1491911889:549919..550167TCONS_00070224-exon-scaffold_516-1491911889:549919..550167Clytia hemisphaericaexon
TCONS_00070224-exon-scaffold_516-1510915933:549919..550167TCONS_00070224-exon-scaffold_516-1510915933:549919..550167Clytia hemisphaericaexon
TCONS_00070224-exon-scaffold_516-1575043694:549919..550167TCONS_00070224-exon-scaffold_516-1575043694:549919..550167Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:549674..550167 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.3395	0.165533	0.384399	0.188037	0.228917	0	0	0	0	0	0	0.113053	0	0	0.0963896	0	0	0	0	0.566477	0	0.240162	0	0	0.364506	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070224 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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