TCONS_00070223 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070223
Unique NameTCONS_00070223
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070223 ID=TCONS_00070223|Name=TCONS_00070223|organism=Clytia hemisphaerica|type=transcript|length=1611bp
ATCACATCAACAACAGAAAGAGGTGTGTTGAGAAGAGAAAAACTGTCAAA
ACTTCTTGACAAGTGAATTCAGATTTTGATGATTTATATATTGAACGTCA
ACGTACAGTACAATTTATCCTGCACAACTAGCAAGATCGCAAAGTCAAAG
TAAAATAATATTAGAATGCAGACGGATTAAGTCCAAATGTAATGATCCTA
TCCAACCATGAGTCATCCGAGGCGAAGTTTTACGTCACAATCTTGCAGAT
CTTCTTCgatataaaaacgaaaaaattgccaaaatttgcAAGTTTTGCCA
TCGCTGTCATATTTTCGACATCGTTAACAATTAATGAAGCTCTGTTGTCA
TCGCGATCGTCCATTTTAACCAAAAAaggAATGCGTCATAATGCACTTTC
CGACTATCAACCATTTGCCGGAATAGGCGACGCACATTTCGACGTCATCT
TAATTGACGATAGGTGTGATTCAAATGTAACTGTCGACCCGCTGTGTTAA
GGAGTTTGCGGAtcgaatcaaaattttaaatgaagtTTGAATCAAACGCG
GACCGAATCGTCCTGTACGAAATGATGGCCGAAATTGCTATCCTGCTTTA
TGAATAAAGATTGAATATTGTCCGTAAATTGAATGTGCTGTTTGTCGGAA
GATCAAAAGAATTTGTTGAGCCcggtattttttaatttatatttttgatc
GTGTGACAATTTTTTACCGTTTTTCTAAAGCTAAGTTAGCTTAAGGATAA
GTTAGGTTTGGTTCTGTAGCAAAATCAAATTAAAGGATGGCAAGCCCTGG
AATACTGGAACATTTTAAATCGGGAATTCAGTCGGCAGTTAAAGATCGGc
attagaaaatatttgaaacaacatgccatattcataaaaaatgagCTAAA
TAGCAAACAAAAATCGGAAACGAAATTTCAAGATAGAATTATAAAGTTCA
TCTCGAGGCACGAGATGGTATGTAAAAAAGGAAAGATATTATTTGGGACA
GATGCTGCTCTTTCTCGATTTTGGAATATGAGTTGAGAGTAGTTCTAATG
AGAAAAGTCGAGATTCTTGTAGATGCTTTCtttgtgaaaatttgaatttg
tacATATTTTGTCTTACACAGTCTGACAGTCAATGGTTAATTGTTCTATA
TTTGTTGTTTCGAATTATTTTTGAGGTGGAAAGTTGCTTTGATTCATTTG
GTTCTTCATTCGATGTTTCAGATGAGTTTTAAAGTTTAGTAGATGTTTGT
CTCTAATTTgtttataaaagatttttaagctttttgatatttgtTGGTCC
AAAAATATACTCGTCGATGTCAATAAGAAGagatgaaaattgattttctc
aGTGTTTGATCGAGTTTGTACttgtgataaaaaaatttaaaatcctttTC
CGCCATCAGCATGTACTTTTATCAACGTTTTGATAGATATTTTGAACTAA
TTCGGTATAAAAATACCATGGTCTGGAAGATATTGTatgctttttgttag
cttttcccTTCTTAATATTACAAGATATAAATTGATTTGCTCGTTAAGAA
AGACGTTACCATGTAATCCTCTAGGGTTTTGTGAAAGATCAAATGATCAA
AAggttaacaa
Run BLAST on NCBI

protein sequence of TCONS_00070223-protein

>TCONS_00070223-protein ID=TCONS_00070223-protein|Name=TCONS_00070223-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MILSNHESSEAKFYVTILQIFFDIKTKKLPKFASFAIAVIFSTSLTINEA
LLSSRSSILTKKGMRHNALSDYQPFAGIGDAHFDVILIDDRCDSNVTVDP
LC
Run BLAST on NCBI

transcript from alignment at scaffold_516:540722..543085+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070223 ID=TCONS_00070223|Name=TCONS_00070223|organism=Clytia hemisphaerica|type=transcript|length=2364bp|location=Sequence derived from alignment at scaffold_516:540722..543085+ (Clytia hemisphaerica)
ATCACATCAACAACAGAAAGAGGTGTGTTGAGAAGAGAAAAACTGTCAAA
ACTTCTTGACAAGTGAATTCAGATTTTGATGATTTATGTATGAAATCAAG
TATTGCCTCAAATATTAAATAACTTTGAGCTACATTTTTAAGGTTAGTTT
TAAAGGGAATCTCCTTTTAGCTAATTATTTTTCCTGTATGAAAAGAGGAT
AGAGGGTTGTCTTAAATGCATGCCTCAGCAGATTTCGATGAAAATTATTC
TATGGGTCATTTTATTTCCTCACTgtaattttgtcattatttggATTTAA
ACATTTCTTCACTAAGATATGTGAAATTCGAGTATTACCTTAAGttattg
ttcttttttccaGATATTGAACGTCAACGTACAGTACAATTTATCCTGCA
CAACTAGCAAGATCGCAAAGTCAAAGTAAAATAATATTAGAATGCAGACG
GATTAAGTCCAAATGTAATGATCCTATCCAACCATGAGTCATCCGAGGCG
AAGTTTTACGTCACAATCTTGCAGATCTTCTTCgatataaaaacgaaaaa
attgccaaaatttgcAAGTTTTGCCATCGCTGTCATATTTTCGACATCGT
TAACAATTAATGAAGCTCTGTTGTCATCGCGATCGTCCATTTTAACCAAA
AAGTAAGTTTAGTAATCTTGGTTAGACATTAATTTACTCTGTTTAGTTTG
TGCAAAGGACATTTCCCGTGGCcctgtttgttattttttgagCTGATTCT
GCTAAAACTACATTGTGACTATTTAATTTATGGAATACATTGTGTAATGA
TGAACAAAACTGAcccaaaagaaaatttatattCGGTCTTTCTCTCTCTC
CCGTGTATATTTTAGATTTGCTTTAACGCTTTGAAAAATTTGTGACATTC
ACCTACCAATTGAAGATAATTTATATAGCataattttcatatattttcat
ttttcagaggAATGCGTCATAATGCACTTTCCGACTATCAACCATTTGCC
GGAATAGGCGACGCACATTTCGACGTCATCTTAATTGACGATAGGTAAGC
CATTCCTAATTCAACCTCGCGAAGTTTTCTACATTGATCTGTAAACATTT
AccgttgttttgaaaagatttattttagatttcaGTGTTAAAAATTTCCT
ATTAAATTGTTTCTCTCTACTGAAacttaaaataaatgaaatatttatca
tttttacgTTGACCAGGTGTGATTCAAATGTAACTGTCGACCCGCTGTGT
TAAGGAGTTTGCGGAtcgaatcaaaattttaaatgaagtTTGAATCAAAC
GCGGACCGAATCGTCCTGTACGAAATGATGGCCGAAATTGCTATCCTGCT
TTATGAATAAAGATTGAATATTGTCCGTAAATTGAATGTGCTGTTTGTCG
GAAGATCAAAAGAATTTGTTGAGCCcggtattttttaatttatatttttg
atcGTGTGACAATTTTTTACCGTTTTTCTAAAGCTAAGTTAGCTTAAGGA
TAAGTTAGGTTTGGTTCTGTAGCAAAATCAAATTAAAGGATGGCAAGCCC
TGGAATACTGGAACATTTTAAATCGGGAATTCAGTCGGCAGTTAAAGATC
GGcattagaaaatatttgaaacaacatgccatattcataaaaaatgagCT
AAATAGCAAACAAAAATCGGAAACGAAATTTCAAGATAGAATTATAAAGT
TCATCTCGAGGCACGAGATGGTATGTAAAAAAGGAAAGATATTATTTGGG
ACAGATGCTGCTCTTTCTCGATTTTGGAATATGAGTTGAGAGTAGTTCTA
ATGAGAAAAGTCGAGATTCTTGTAGATGCTTTCtttgtgaaaatttgaat
ttgtacATATTTTGTCTTACACAGTCTGACAGTCAATGGTTAATTGTTCT
ATATTTGTTGTTTCGAATTATTTTTGAGGTGGAAAGTTGCTTTGATTCAT
TTGGTTCTTCATTCGATGTTTCAGATGAGTTTTAAAGTTTAGTAGATGTT
TGTCTCTAATTTgtttataaaagatttttaagctttttgatatttgtTGG
TCCAAAAATATACTCGTCGATGTCAATAAGAAGagatgaaaattgatttt
ctcaGTGTTTGATCGAGTTTGTACttgtgataaaaaaatttaaaatcctt
tTCCGCCATCAGCATGTACTTTTATCAACGTTTTGATAGATATTTTGAAC
TAATTCGGTATAAAAATACCATGGTCTGGAAGATATTGTatgctttttgt
tagcttttcccTTCTTAATATTACAAGATATAAATTGATTTGCTCGTTAA
GAAAGACGTTACCATGTAATCCTCTAGGGTTTTGTGAAAGATCAAATGAT
CAAAAggttaacaa

Coding sequence (CDS) from alignment at scaffold_516:540722..543085+

>TCONS_00070223 ID=TCONS_00070223|Name=TCONS_00070223|organism=Clytia hemisphaerica|type=CDS|length=927bp|location=Sequence derived from alignment at scaffold_516:540722..543085+ (Clytia hemisphaerica)
ATGATCCTATCCAACCATGAGTCATCCGAGGCGAAGTTTTACGTCACAAT
CTTGCAGATCTTCTTCgatataaaaacgaaaaaattgccaaaatttgcAA
GTTTTGCCATCGCTGTCATATTTTCGACATCGTTAACAATTAATGAAGCT
CTGTTGTCATCGCGATCGTCCATTTTAACCAAAAAaggAATGCGTCATAA
TGCACTTTCCGACTATCAACCATTTGCCGGAATAGGCGACGCACATTTCG
ACGTCATCTTAATTGACGATAGGTGTGATTCAAATGTAACTGTCGACCCG
CTGTGTTAAATGATCCTATCCAACCATGAGTCATCCGAGGCGAAGTTTTA
CGTCACAATCTTGCAGATCTTCTTCgatataaaaacgaaaaaattgccaa
aatttgcAAGTTTTGCCATCGCTGTCATATTTTCGACATCGTTAACAATT
AATGAAGCTCTGTTGTCATCGCGATCGTCCATTTTAACCAAAAAaggAAT
GCGTCATAATGCACTTTCCGACTATCAACCATTTGCCGGAATAGGCGACG
CACATTTCGACGTCATCTTAATTGACGATAGGTGTGATTCAAATGTAACT
GTCGACCCGCTGTGTTAAATGATCCTATCCAACCATGAGTCATCCGAGGC
GAAGTTTTACGTCACAATCTTGCAGATCTTCTTCgatataaaaacgaaaa
aattgccaaaatttgcAAGTTTTGCCATCGCTGTCATATTTTCGACATCG
TTAACAATTAATGAAGCTCTGTTGTCATCGCGATCGTCCATTTTAACCAA
AAAaggAATGCGTCATAATGCACTTTCCGACTATCAACCATTTGCCGGAA
TAGGCGACGCACATTTCGACGTCATCTTAATTGACGATAGGTGTGATTCA
AATGTAACTGTCGACCCGCTGTGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043731XLOC_043731Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070223-proteinTCONS_00070223-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070223-exon-scaffold_516-1491911889:540722..540808TCONS_00070223-exon-scaffold_516-1491911889:540722..540808Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1510915933:540722..540808TCONS_00070223-exon-scaffold_516-1510915933:540722..540808Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1575043694:540722..540808TCONS_00070223-exon-scaffold_516-1575043694:540722..540808Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1491911889:541085..541373TCONS_00070223-exon-scaffold_516-1491911889:541085..541373Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1510915933:541085..541373TCONS_00070223-exon-scaffold_516-1510915933:541085..541373Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1575043694:541085..541373TCONS_00070223-exon-scaffold_516-1575043694:541085..541373Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1491911889:541679..541765TCONS_00070223-exon-scaffold_516-1491911889:541679..541765Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1510915933:541679..541765TCONS_00070223-exon-scaffold_516-1510915933:541679..541765Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1575043694:541679..541765TCONS_00070223-exon-scaffold_516-1575043694:541679..541765Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1491911889:541938..543085TCONS_00070223-exon-scaffold_516-1491911889:541938..543085Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1510915933:541938..543085TCONS_00070223-exon-scaffold_516-1510915933:541938..543085Clytia hemisphaericaexon
TCONS_00070223-exon-scaffold_516-1575043694:541938..543085TCONS_00070223-exon-scaffold_516-1575043694:541938..543085Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:540722..543085 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.57387	0	0	0	0.238877	0.188764	0.195202	0	0	0.105653	0	0	0	0	0	0	0.0949822	0.0194707	0	0	0.244664	0.143206	0	0.341342	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070223 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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