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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070222 ID=TCONS_00070222|Name=TCONS_00070222|organism=Clytia hemisphaerica|type=transcript|length=1669bp
GAAATCACATCAACAACAGAAAGAGGTGTGTTGAGAAGAGAAAAACTGTC
AAAACTTCTTGACAAGTGAATTCAGATTTTGATGATTTATGTATGAAATC
AAGTATTGCCTCAAATATTAAATAACTTTGAGCTACATTTTTAAGATATT
GAACGTCAACGTACAGTACAATTTATCCTGCACAACTAGCAAGATCGCAA
AGTCAAAGTAAAATAATATTAGAATGCAGACGGATTAAGTCCAAATGTAA
TGATCCTATCCAACCATGAGTCATCCGAGGCGAAGTTTTACGTCACAATC
TTGCAGATCTTCTTCgatataaaaacgaaaaaattgccaaaatttgcAAG
TTTTGCCATCGCTGTCATATTTTCGACATCGTTAACAATTAATGAAGCTC
TGTTGTCATCGCGATCGTCCATTTTAACCAAAAAaggAATGCGTCATAAT
GCACTTTCCGACTATCAACCATTTGCCGGAATAGGCGACGCACATTTCGA
CGTCATCTTAATTGACGATAGGTGTGATTCAAATGTAACTGTCGACCCGC
TGTGTTAAGGAGTTTGCGGAtcgaatcaaaattttaaatgaagtTTGAAT
CAAACGCGGACCGAATCGTCCTGTACGAAATGATGGCCGAAATTGCTATC
CTGCTTTATGAATAAAGATTGAATATTGTCCGTAAATTGAATGTGCTGTT
TGTCGGAAGATCAAAAGAATTTGTTGAGCCcggtattttttaatttatat
ttttgatcGTGTGACAATTTTTTACCGTTTTTCTAAAGCTAAGTTAGCTT
AAGGATAAGTTAGGTTTGGTTCTGTAGCAAAATCAAATTAAAGGATGGCA
AGCCCTGGAATACTGGAACATTTTAAATCGGGAATTCAGTCGGCAGTTAA
AGATCGGcattagaaaatatttgaaacaacatgccatattcataaaaaat
gagCTAAATAGCAAACAAAAATCGGAAACGAAATTTCAAGATAGAATTAT
AAAGTTCATCTCGAGGCACGAGATGGTATGTAAAAAAGGAAAGATATTAT
TTGGGACAGATGCTGCTCTTTCTCGATTTTGGAATATGAGTTGAGAGTAG
TTCTAATGAGAAAAGTCGAGATTCTTGTAGATGCTTTCtttgtgaaaatt
tgaatttgtacATATTTTGTCTTACACAGTCTGACAGTCAATGGTTAATT
GTTCTATATTTGTTGTTTCGAATTATTTTTGAGGTGGAAAGTTGCTTTGA
TTCATTTGGTTCTTCATTCGATGTTTCAGATGAGTTTTAAAGTTTAGTAG
ATGTTTGTCTCTAATTTgtttataaaagatttttaagctttttgatattt
gtTGGTCCAAAAATATACTCGTCGATGTCAATAAGAAGagatgaaaattg
attttctcaGTGTTTGATCGAGTTTGTACttgtgataaaaaaatttaaaa
tcctttTCCGCCATCAGCATGTACTTTTATCAACGTTTTGATAGATATTT
TGAACTAATTCGGTATAAAAATACCATGGTCTGGAAGATATTGTatgctt
tttgttagcttttcccTTCTTAATATTACAAGATATAAATTGATTTGCTC
GTTAAGAAAGACGTTACCATGTAATCCTCTAGGGTTTTGTGAAAGATCAA
ATGATCAAAAggttaacaa Run BLAST on NCBI transcript from alignment at scaffold_516:540719..543085+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070222 ID=TCONS_00070222|Name=TCONS_00070222|organism=Clytia hemisphaerica|type=transcript|length=2367bp|location=Sequence derived from alignment at scaffold_516:540719..543085+ (Clytia hemisphaerica)
GAAATCACATCAACAACAGAAAGAGGTGTGTTGAGAAGAGAAAAACTGTC
AAAACTTCTTGACAAGTGAATTCAGATTTTGATGATTTATGTATGAAATC
AAGTATTGCCTCAAATATTAAATAACTTTGAGCTACATTTTTAAGGTTAG
TTTTAAAGGGAATCTCCTTTTAGCTAATTATTTTTCCTGTATGAAAAGAG
GATAGAGGGTTGTCTTAAATGCATGCCTCAGCAGATTTCGATGAAAATTA
TTCTATGGGTCATTTTATTTCCTCACTgtaattttgtcattatttggATT
TAAACATTTCTTCACTAAGATATGTGAAATTCGAGTATTACCTTAAGtta
ttgttcttttttccaGATATTGAACGTCAACGTACAGTACAATTTATCCT
GCACAACTAGCAAGATCGCAAAGTCAAAGTAAAATAATATTAGAATGCAG
ACGGATTAAGTCCAAATGTAATGATCCTATCCAACCATGAGTCATCCGAG
GCGAAGTTTTACGTCACAATCTTGCAGATCTTCTTCgatataaaaacgaa
aaaattgccaaaatttgcAAGTTTTGCCATCGCTGTCATATTTTCGACAT
CGTTAACAATTAATGAAGCTCTGTTGTCATCGCGATCGTCCATTTTAACC
AAAAAGTAAGTTTAGTAATCTTGGTTAGACATTAATTTACTCTGTTTAGT
TTGTGCAAAGGACATTTCCCGTGGCcctgtttgttattttttgagCTGAT
TCTGCTAAAACTACATTGTGACTATTTAATTTATGGAATACATTGTGTAA
TGATGAACAAAACTGAcccaaaagaaaatttatattCGGTCTTTCTCTCT
CTCCCGTGTATATTTTAGATTTGCTTTAACGCTTTGAAAAATTTGTGACA
TTCACCTACCAATTGAAGATAATTTATATAGCataattttcatatatttt
catttttcagaggAATGCGTCATAATGCACTTTCCGACTATCAACCATTT
GCCGGAATAGGCGACGCACATTTCGACGTCATCTTAATTGACGATAGGTA
AGCCATTCCTAATTCAACCTCGCGAAGTTTTCTACATTGATCTGTAAACA
TTTAccgttgttttgaaaagatttattttagatttcaGTGTTAAAAATTT
CCTATTAAATTGTTTCTCTCTACTGAAacttaaaataaatgaaatattta
tcatttttacgTTGACCAGGTGTGATTCAAATGTAACTGTCGACCCGCTG
TGTTAAGGAGTTTGCGGAtcgaatcaaaattttaaatgaagtTTGAATCA
AACGCGGACCGAATCGTCCTGTACGAAATGATGGCCGAAATTGCTATCCT
GCTTTATGAATAAAGATTGAATATTGTCCGTAAATTGAATGTGCTGTTTG
TCGGAAGATCAAAAGAATTTGTTGAGCCcggtattttttaatttatattt
ttgatcGTGTGACAATTTTTTACCGTTTTTCTAAAGCTAAGTTAGCTTAA
GGATAAGTTAGGTTTGGTTCTGTAGCAAAATCAAATTAAAGGATGGCAAG
CCCTGGAATACTGGAACATTTTAAATCGGGAATTCAGTCGGCAGTTAAAG
ATCGGcattagaaaatatttgaaacaacatgccatattcataaaaaatga
gCTAAATAGCAAACAAAAATCGGAAACGAAATTTCAAGATAGAATTATAA
AGTTCATCTCGAGGCACGAGATGGTATGTAAAAAAGGAAAGATATTATTT
GGGACAGATGCTGCTCTTTCTCGATTTTGGAATATGAGTTGAGAGTAGTT
CTAATGAGAAAAGTCGAGATTCTTGTAGATGCTTTCtttgtgaaaatttg
aatttgtacATATTTTGTCTTACACAGTCTGACAGTCAATGGTTAATTGT
TCTATATTTGTTGTTTCGAATTATTTTTGAGGTGGAAAGTTGCTTTGATT
CATTTGGTTCTTCATTCGATGTTTCAGATGAGTTTTAAAGTTTAGTAGAT
GTTTGTCTCTAATTTgtttataaaagatttttaagctttttgatatttgt
TGGTCCAAAAATATACTCGTCGATGTCAATAAGAAGagatgaaaattgat
tttctcaGTGTTTGATCGAGTTTGTACttgtgataaaaaaatttaaaatc
ctttTCCGCCATCAGCATGTACTTTTATCAACGTTTTGATAGATATTTTG
AACTAATTCGGTATAAAAATACCATGGTCTGGAAGATATTGTatgctttt
tgttagcttttcccTTCTTAATATTACAAGATATAAATTGATTTGCTCGT
TAAGAAAGACGTTACCATGTAATCCTCTAGGGTTTTGTGAAAGATCAAAT
GATCAAAAggttaacaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070222-exon-scaffold_516-1491911889:540719..540863 | TCONS_00070222-exon-scaffold_516-1491911889:540719..540863 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1510915933:540719..540863 | TCONS_00070222-exon-scaffold_516-1510915933:540719..540863 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1575043694:540719..540863 | TCONS_00070222-exon-scaffold_516-1575043694:540719..540863 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1491911889:541085..541373 | TCONS_00070222-exon-scaffold_516-1491911889:541085..541373 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1510915933:541085..541373 | TCONS_00070222-exon-scaffold_516-1510915933:541085..541373 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1575043694:541085..541373 | TCONS_00070222-exon-scaffold_516-1575043694:541085..541373 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1491911889:541679..541765 | TCONS_00070222-exon-scaffold_516-1491911889:541679..541765 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1510915933:541679..541765 | TCONS_00070222-exon-scaffold_516-1510915933:541679..541765 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1575043694:541679..541765 | TCONS_00070222-exon-scaffold_516-1575043694:541679..541765 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1491911889:541938..543085 | TCONS_00070222-exon-scaffold_516-1491911889:541938..543085 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1510915933:541938..543085 | TCONS_00070222-exon-scaffold_516-1510915933:541938..543085 | Clytia hemisphaerica | exon |
| TCONS_00070222-exon-scaffold_516-1575043694:541938..543085 | TCONS_00070222-exon-scaffold_516-1575043694:541938..543085 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:540719..543085 + |
Blast
The following BLAST results are available for this feature:
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