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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070222 ID=TCONS_00070222|Name=TCONS_00070222|organism=Clytia hemisphaerica|type=transcript|length=1669bp GAAATCACATCAACAACAGAAAGAGGTGTGTTGAGAAGAGAAAAACTGTC AAAACTTCTTGACAAGTGAATTCAGATTTTGATGATTTATGTATGAAATC AAGTATTGCCTCAAATATTAAATAACTTTGAGCTACATTTTTAAGATATT GAACGTCAACGTACAGTACAATTTATCCTGCACAACTAGCAAGATCGCAA AGTCAAAGTAAAATAATATTAGAATGCAGACGGATTAAGTCCAAATGTAA TGATCCTATCCAACCATGAGTCATCCGAGGCGAAGTTTTACGTCACAATC TTGCAGATCTTCTTCgatataaaaacgaaaaaattgccaaaatttgcAAG TTTTGCCATCGCTGTCATATTTTCGACATCGTTAACAATTAATGAAGCTC TGTTGTCATCGCGATCGTCCATTTTAACCAAAAAaggAATGCGTCATAAT GCACTTTCCGACTATCAACCATTTGCCGGAATAGGCGACGCACATTTCGA CGTCATCTTAATTGACGATAGGTGTGATTCAAATGTAACTGTCGACCCGC TGTGTTAAGGAGTTTGCGGAtcgaatcaaaattttaaatgaagtTTGAAT CAAACGCGGACCGAATCGTCCTGTACGAAATGATGGCCGAAATTGCTATC CTGCTTTATGAATAAAGATTGAATATTGTCCGTAAATTGAATGTGCTGTT TGTCGGAAGATCAAAAGAATTTGTTGAGCCcggtattttttaatttatat ttttgatcGTGTGACAATTTTTTACCGTTTTTCTAAAGCTAAGTTAGCTT AAGGATAAGTTAGGTTTGGTTCTGTAGCAAAATCAAATTAAAGGATGGCA AGCCCTGGAATACTGGAACATTTTAAATCGGGAATTCAGTCGGCAGTTAA AGATCGGcattagaaaatatttgaaacaacatgccatattcataaaaaat gagCTAAATAGCAAACAAAAATCGGAAACGAAATTTCAAGATAGAATTAT AAAGTTCATCTCGAGGCACGAGATGGTATGTAAAAAAGGAAAGATATTAT TTGGGACAGATGCTGCTCTTTCTCGATTTTGGAATATGAGTTGAGAGTAG TTCTAATGAGAAAAGTCGAGATTCTTGTAGATGCTTTCtttgtgaaaatt tgaatttgtacATATTTTGTCTTACACAGTCTGACAGTCAATGGTTAATT GTTCTATATTTGTTGTTTCGAATTATTTTTGAGGTGGAAAGTTGCTTTGA TTCATTTGGTTCTTCATTCGATGTTTCAGATGAGTTTTAAAGTTTAGTAG ATGTTTGTCTCTAATTTgtttataaaagatttttaagctttttgatattt gtTGGTCCAAAAATATACTCGTCGATGTCAATAAGAAGagatgaaaattg attttctcaGTGTTTGATCGAGTTTGTACttgtgataaaaaaatttaaaa tcctttTCCGCCATCAGCATGTACTTTTATCAACGTTTTGATAGATATTT TGAACTAATTCGGTATAAAAATACCATGGTCTGGAAGATATTGTatgctt tttgttagcttttcccTTCTTAATATTACAAGATATAAATTGATTTGCTC GTTAAGAAAGACGTTACCATGTAATCCTCTAGGGTTTTGTGAAAGATCAA ATGATCAAAAggttaacaa Run BLAST on NCBI transcript from alignment at scaffold_516:540719..543085+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070222 ID=TCONS_00070222|Name=TCONS_00070222|organism=Clytia hemisphaerica|type=transcript|length=2367bp|location=Sequence derived from alignment at scaffold_516:540719..543085+ (Clytia hemisphaerica) GAAATCACATCAACAACAGAAAGAGGTGTGTTGAGAAGAGAAAAACTGTC
AAAACTTCTTGACAAGTGAATTCAGATTTTGATGATTTATGTATGAAATC
AAGTATTGCCTCAAATATTAAATAACTTTGAGCTACATTTTTAAGGTTAG
TTTTAAAGGGAATCTCCTTTTAGCTAATTATTTTTCCTGTATGAAAAGAG
GATAGAGGGTTGTCTTAAATGCATGCCTCAGCAGATTTCGATGAAAATTA
TTCTATGGGTCATTTTATTTCCTCACTgtaattttgtcattatttggATT
TAAACATTTCTTCACTAAGATATGTGAAATTCGAGTATTACCTTAAGtta
ttgttcttttttccaGATATTGAACGTCAACGTACAGTACAATTTATCCT
GCACAACTAGCAAGATCGCAAAGTCAAAGTAAAATAATATTAGAATGCAG
ACGGATTAAGTCCAAATGTAATGATCCTATCCAACCATGAGTCATCCGAG
GCGAAGTTTTACGTCACAATCTTGCAGATCTTCTTCgatataaaaacgaa
aaaattgccaaaatttgcAAGTTTTGCCATCGCTGTCATATTTTCGACAT
CGTTAACAATTAATGAAGCTCTGTTGTCATCGCGATCGTCCATTTTAACC
AAAAAGTAAGTTTAGTAATCTTGGTTAGACATTAATTTACTCTGTTTAGT
TTGTGCAAAGGACATTTCCCGTGGCcctgtttgttattttttgagCTGAT
TCTGCTAAAACTACATTGTGACTATTTAATTTATGGAATACATTGTGTAA
TGATGAACAAAACTGAcccaaaagaaaatttatattCGGTCTTTCTCTCT
CTCCCGTGTATATTTTAGATTTGCTTTAACGCTTTGAAAAATTTGTGACA
TTCACCTACCAATTGAAGATAATTTATATAGCataattttcatatatttt
catttttcagaggAATGCGTCATAATGCACTTTCCGACTATCAACCATTT
GCCGGAATAGGCGACGCACATTTCGACGTCATCTTAATTGACGATAGGTA
AGCCATTCCTAATTCAACCTCGCGAAGTTTTCTACATTGATCTGTAAACA
TTTAccgttgttttgaaaagatttattttagatttcaGTGTTAAAAATTT
CCTATTAAATTGTTTCTCTCTACTGAAacttaaaataaatgaaatattta
tcatttttacgTTGACCAGGTGTGATTCAAATGTAACTGTCGACCCGCTG
TGTTAAGGAGTTTGCGGAtcgaatcaaaattttaaatgaagtTTGAATCA
AACGCGGACCGAATCGTCCTGTACGAAATGATGGCCGAAATTGCTATCCT
GCTTTATGAATAAAGATTGAATATTGTCCGTAAATTGAATGTGCTGTTTG
TCGGAAGATCAAAAGAATTTGTTGAGCCcggtattttttaatttatattt
ttgatcGTGTGACAATTTTTTACCGTTTTTCTAAAGCTAAGTTAGCTTAA
GGATAAGTTAGGTTTGGTTCTGTAGCAAAATCAAATTAAAGGATGGCAAG
CCCTGGAATACTGGAACATTTTAAATCGGGAATTCAGTCGGCAGTTAAAG
ATCGGcattagaaaatatttgaaacaacatgccatattcataaaaaatga
gCTAAATAGCAAACAAAAATCGGAAACGAAATTTCAAGATAGAATTATAA
AGTTCATCTCGAGGCACGAGATGGTATGTAAAAAAGGAAAGATATTATTT
GGGACAGATGCTGCTCTTTCTCGATTTTGGAATATGAGTTGAGAGTAGTT
CTAATGAGAAAAGTCGAGATTCTTGTAGATGCTTTCtttgtgaaaatttg
aatttgtacATATTTTGTCTTACACAGTCTGACAGTCAATGGTTAATTGT
TCTATATTTGTTGTTTCGAATTATTTTTGAGGTGGAAAGTTGCTTTGATT
CATTTGGTTCTTCATTCGATGTTTCAGATGAGTTTTAAAGTTTAGTAGAT
GTTTGTCTCTAATTTgtttataaaagatttttaagctttttgatatttgt
TGGTCCAAAAATATACTCGTCGATGTCAATAAGAAGagatgaaaattgat
tttctcaGTGTTTGATCGAGTTTGTACttgtgataaaaaaatttaaaatc
ctttTCCGCCATCAGCATGTACTTTTATCAACGTTTTGATAGATATTTTG
AACTAATTCGGTATAAAAATACCATGGTCTGGAAGATATTGTatgctttt
tgttagcttttcccTTCTTAATATTACAAGATATAAATTGATTTGCTCGT
TAAGAAAGACGTTACCATGTAATCCTCTAGGGTTTTGTGAAAGATCAAAT
GATCAAAAggttaacaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00070222-exon-scaffold_516-1491911889:540719..540863 | TCONS_00070222-exon-scaffold_516-1491911889:540719..540863 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1510915933:540719..540863 | TCONS_00070222-exon-scaffold_516-1510915933:540719..540863 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1575043694:540719..540863 | TCONS_00070222-exon-scaffold_516-1575043694:540719..540863 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1491911889:541085..541373 | TCONS_00070222-exon-scaffold_516-1491911889:541085..541373 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1510915933:541085..541373 | TCONS_00070222-exon-scaffold_516-1510915933:541085..541373 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1575043694:541085..541373 | TCONS_00070222-exon-scaffold_516-1575043694:541085..541373 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1491911889:541679..541765 | TCONS_00070222-exon-scaffold_516-1491911889:541679..541765 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1510915933:541679..541765 | TCONS_00070222-exon-scaffold_516-1510915933:541679..541765 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1575043694:541679..541765 | TCONS_00070222-exon-scaffold_516-1575043694:541679..541765 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1491911889:541938..543085 | TCONS_00070222-exon-scaffold_516-1491911889:541938..543085 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1510915933:541938..543085 | TCONS_00070222-exon-scaffold_516-1510915933:541938..543085 | Clytia hemisphaerica | exon |
TCONS_00070222-exon-scaffold_516-1575043694:541938..543085 | TCONS_00070222-exon-scaffold_516-1575043694:541938..543085 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_516 | supercontig | scaffold_516:540719..543085 + |
Blast
The following BLAST results are available for this feature:
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