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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070217 ID=TCONS_00070217|Name=TCONS_00070217|organism=Clytia hemisphaerica|type=transcript|length=1474bp
CACTTCTTTTTCATCACAGATCTGAGGGTGTCCCTAGAATCTACGAAAAT
GATTTTGCTCTGGAAAAGAAAATTTCGATGTCATCCATGGACCTGACTAT
CCTTGGAGAAGCACATGGCATGATTACAGACCTGCTAGCTGACACCAGTC
TTCCGTTGAACGTCACCGGTACTTTACGTATTGTGGCTGATATGATCTCA
CCTCTTCTTCAGCATAGTTTACATCGACAAGGTGCACCATTGTTGACTGT
ACTGGAGAAGACGAAAAACAATGAGGATCATGAGCAAGTTCAAAACCAAC
CAGATCTGAAGGATGACACTCCACTCTCACTGAAACAGCGGCTGCAACGT
AATTTAGGCGTCAGCTCACGTAGGATGTCATCAAGTTACACGACGACTAC
ATCTGCAACAGGAATGCCAACCATAGATATGGAGTATCACCACAAGAAAT
CTAACGCTAACAAAACAAGTGCAAATAGTACTTCTTCACCGACTGCCATC
AAAAAGACTTCTAGTAGATCTAAATCGTACGCGGGTGCGTTAACACCTGC
AGAAAGATCCAATCTTTTGAAATCACACTCGCGTTCTTTTTCACAATCCA
CTAGTCCAACGCAGAGCGGTCTGCTTAGGAAAGAGTTAGCCACATCAGAT
GACACCATTTTTAAAGTGGAAATCGAACGCGGGAAACCGGTCTTCTTTGA
AGGAATGGATGCTTCAGAATCTGAGAACGAAACCATTGAATCGGCAGATG
AGGACACGGTCAAAGATATCATCTCCTTGAGCGGATGTACATCGTccaat
aataataacaacaatatTAACAACAGGACTAAATTTGTATTAGATGAACG
TTTAGAAGATGTCAAAGAGACTCCCGAAAAAGAACCAGTAGATACTCAAC
CTCATAAAACTCCTTTAGAAACTGTTGAAAATGTCGAAGATACGATAAAC
GAAACGGCGTCGGTTGAACCACCGTCAACGTTAAGCACCGTAGAAGATAA
CGTCGAAGATGTTACGTCAGAAAGCGTAACCACGGAAGCGACAGAAACGA
CACCCCCTAAACGAAGCTTACGTAAAGTTAGTGATACGAGCCGTACCTTA
CGTAGTAACTCAACAGGAAGCGTTAAAAATGAACTTAAGTCCAGTGATTC
TAGTGATAATCTCGTCATTCCAGCGTCCAATCTGATGCGTCGAAAATCGT
CACGTGAGCTACACATGGAGTATGAGATCGCCATATCCAGAGATATTGAT
GATATGTTAAGCAAAGTCAAGGAGTGGGATTTCCCAATCTTCGAACTCAG
TGAAAAATGCAACGTTTTAACACAAGTAGGTGTACTTCTTCTTTTCTGTA
TTATCTTTCACGATTTTAAAAGCGTCTACAATCCTTAAACTTGTTTTTTA
GGATTAGTGTGATTTAAATGCGTCAGTCTGATAACATTAAGGTTAGCCAG
AAACTCGAGCAAAAGTTGGACAAG Run BLAST on NCBI transcript from alignment at scaffold_516:282487..285539+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070217 ID=TCONS_00070217|Name=TCONS_00070217|organism=Clytia hemisphaerica|type=transcript|length=3053bp|location=Sequence derived from alignment at scaffold_516:282487..285539+ (Clytia hemisphaerica)
CACTTCTTTTTCATCACAGATCTGAGGGTGTCCCTAGAATCTACGAAAAT
GATTTTGCTCTGGAAAAGGTAAGATGTGACTGATAAACTACAAAGAATCA
GATTGTCTCTCTTTCTTTTTACTTGAGAAGCTTTGCTCCCACTATATTGT
TTATGGTTTTGttataattttggaaaattgaagaaGCCATTCAACAAGTC
TATGAAGTTGATATTTTCATATTGTCTttagttcttcttcttcttcttca
atgtTCTTGtgtttaattttcttctcgtttctttcgggggaaaatgaaaa
atatttagtcACTCATATATTGGAAGTGAAAAAAAGTATCAAGAGTGTGA
AGGAATCACCTGCAGAAAATATTGTTGGCtttgcttcttcttcttcttct
ttcctTGGTTAAGTTTTAAACATCTGCTGACTACAAAAAAGGActgcttt
ttttttcttattcttgCTTCTTCTATATATTGTTTCTTCATCTCTTCTAC
TACTGCTGATTGAAAGTTCATCAATTCTCCTCCTTTTTTTCTCTTCCACC
TTCAAACCCCTTCAATATTCACAAAAAGGtcatttcaaaaagaaattatt
ttcaaacccctttttgttttgttgtaatGTACTCAATAATCGACTTGATG
GTcagcttttttcatttttgtaaggTTGCATTGCATGGCAATTTATCATG
TAACGAGAAATCTATACCACAATTAAAAAGGATATTTATATACGCTTCTC
TTAAACAAGCCGCAAAATCAGTCAGATGAAGCATCCTTTATTTTATCTTG
TTGTTTCAAAACCAGCACACTTAAATGTTTTGGAAAAAGTACATATGTTG
TTTATTATTGGAACTGTCAGAACGAAAGAAAAAGAAGGTCCttcatttca
aaattccttTATTCCTTATCCCTGGCTTCTTCCCATCTTAAAATAGCAAG
TCTCTTCCACCGTTCCTTAAAGTATTGCCGGCAACCGACATTTACATAAC
CTTTTACTATTTTCCCACAAAAATTTCCTCTTCTTTTCAACaatgaaatt
ttaatttcatgTACAACCATTAAAAACCCCTTATACtaatttctcttttc
aaaaGATTCTTATAAATTTCTTGCAGTTATATATTACAAATGTATTACAA
TTATATGTTACAAATCTATTACATTTTGTATTCTAGTAATACTTGCAGCA
AAAACACGTTGAAAAATATCATGCTTTGTCAAAATTACCAGATAATCTCG
AATAACAAATCATCCAATtgtatttcttcttctttttctgcaGAAAATTT
CGATGTCATCCATGGACCTGACTATCCTTGGAGAAGCACATGGCATGATT
ACAGACCTGCTAGCTGACACCAGTCTTCCGTTGAACGTCACCGGTACTTT
ACGTATTGTGGCTGATATGATCTCACCTCTTCTTCAGCATAGTTTACATC
GACAAGGTGCACCATTGTTGACTGTACTGGAGAAGACGAAAAACAATGAG
GATCATGAGCAAGTTCAAAACCAACCAGATCTGAAGGATGACACTCCACT
CTCACTGAAACAGGTACCAGAATGTTAAAGCAGCATTTATCAACCTTAAC
GCTGCGCTAATGGTCACTTGCCGGTGTCTGGGCTCGATAGCAATGAGTCA
gctttcattttctaaattccCATCATTTCAAAAACTGAGTATAAATTGAC
AGAGAGTCAAACCCAGTTTCACAAGCTGAGGGGTAATCTATAGGCTGCCT
ATGAAATAATGTCCTGAGATTTCGTAAACTTATTTATGGCCTTTCATTGT
ACGAGTTACCGAAAAATGACTTGATTTTTAAAGGACCACATACATATTCC
CATACCATACTCTAAAAGCCTATTGGATGTAACAGACTTACCACtcactt
attcactttgtatTTAGCGGCTGCAACGTAATTTAGGCGTCAGCTCACGT
AGGATGTCATCAAGTTACACGACGACTACATCTGCAACAGGAATGCCAAC
CATAGATATGGAGTATCACCACAAGAAATCTAACGCTAACAAAACAAGTG
CAAATAGTACTTCTTCACCGACTGCCATCAAAAAGACTTCTAGTAGATCT
AAATCGTACGCGGGTGCGTTAACACCTGCAGAAAGATCCAATCTTTTGAA
ATCACACTCGCGTTCTTTTTCACAATCCACTAGTCCAACGCAGAGCGGTC
TGCTTAGGAAAGAGTTAGCCACATCAGATGACACCATTTTTAAAGTGGAA
ATCGAACGCGGGAAACCGGTCTTCTTTGAAGGAATGGATGCTTCAGAATC
TGAGAACGAAACCATTGAATCGGCAGATGAGGACACGGTCAAAGATATCA
TCTCCTTGAGCGGATGTACATCGTccaataataataacaacaatatTAAC
AACAGGACTAAATTTGTATTAGATGAACGTTTAGAAGATGTCAAAGAGAC
TCCCGAAAAAGAACCAGTAGATACTCAACCTCATAAAACTCCTTTAGAAA
CTGTTGAAAATGTCGAAGATACGATAAACGAAACGGCGTCGGTTGAACCA
CCGTCAACGTTAAGCACCGTAGAAGATAACGTCGAAGATGTTACGTCAGA
AAGCGTAACCACGGAAGCGACAGAAACGACACCCCCTAAACGAAGCTTAC
GTAAAGTTAGTGATACGAGCCGTACCTTACGTAGTAACTCAACAGGAAGC
GTTAAAAATGAACTTAAGTCCAGTGATTCTAGTGATAATCTCGTCATTCC
AGCGTCCAATCTGATGCGTCGAAAATCGTCACGTGAGCTACACATGGAGT
ATGAGATCGCCATATCCAGAGATATTGATGATATGTTAAGCAAAGTCAAG
GAGTGGGATTTCCCAATCTTCGAACTCAGTGAAAAATGCAACGTTTTAAC
ACAAGTAGGTGTACTTCTTCTTTTCTGTATTATCTTTCACGATTTTAAAA
GCGTCTACAATCCTTAAACTTGTTTTTTAGGATTAGTGTGATTTAAATGC
GTCAGTCTGATAACATTAAGGTTAGCCAGAAACTCGAGCAAAAGTTGGAC
AAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070217-exon-scaffold_516-1491911889:282487..282554 | TCONS_00070217-exon-scaffold_516-1491911889:282487..282554 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1510915933:282487..282554 | TCONS_00070217-exon-scaffold_516-1510915933:282487..282554 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1575043694:282487..282554 | TCONS_00070217-exon-scaffold_516-1575043694:282487..282554 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1491911889:283780..284049 | TCONS_00070217-exon-scaffold_516-1491911889:283780..284049 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1510915933:283780..284049 | TCONS_00070217-exon-scaffold_516-1510915933:283780..284049 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1575043694:283780..284049 | TCONS_00070217-exon-scaffold_516-1575043694:283780..284049 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1491911889:284404..285539 | TCONS_00070217-exon-scaffold_516-1491911889:284404..285539 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1510915933:284404..285539 | TCONS_00070217-exon-scaffold_516-1510915933:284404..285539 | Clytia hemisphaerica | exon |
| TCONS_00070217-exon-scaffold_516-1575043694:284404..285539 | TCONS_00070217-exon-scaffold_516-1575043694:284404..285539 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_516 | supercontig | scaffold_516:282487..285539 + |
Blast
The following BLAST results are available for this feature:
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