TCONS_00070199 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070199
Unique NameTCONS_00070199
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3080

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070199 ID=TCONS_00070199|Name=TCONS_00070199|organism=Clytia hemisphaerica|type=transcript|length=3080bp
CAGCTTACGTATAATCCTTGAATatttaaattcttaaaattttcttcata
ttACAAATTTTAACTTCGATGTTAAATATATCCTAAGTTTGttctgattc
ttataaaaagtaacaaattttCATTAGCTCTACAAAAACAGACTGAGTCT
TGACGTCATATTGACAAAAATCACACAAATATAAAGTTCACAGGAAAATA
GAACTTTAAATAAAAGCTCGCACTGtcatttttggctttcattcTTACAT
AAGTATTTGATAGTGATAGAGTCAAGAAAATTTATACACAGTCAAAATGC
ACTTTTCATGGGTTTTAATCGCCTGTTTGGTATTTTTGGAATTGCACCAA
AACGAGGTCGATGCTCATTGGTTTCGAAACATCAAGCGTAAGATCCGCAT
CCGGCCGAAAGTTCCCTTCGTGCGTGGAAGTTTATGTCGCATGCGCCATC
ATCGAACGATAGTGGATGAGAACAATCGTTATGTGAAATGTGTACGCAGT
TGCCCAAGTACTGGATACCAAGAACTATATTCCGTTCGATGGGGACATTA
CTGTAAACCTGTCGTGATTCCAAAGGGTTGTTCAGATCAATATTGCAACA
CATGCATCGCATCATATAAATGGATATTCGATGCTACCCGATATCGTTCA
AAATGTGTCCGGAAATGTCCGAGTGGTTATCGAGAACGCATGCCTAGATG
CGAGAAATGCTTGGTCAATAATTGCCAACGCTGCGAAAACGATTTGTGGA
GATGTAGCAAGTGTAAATGGGGTCTTGCATTACAAAGGACATACATGGGA
TCTACACTCTGTCTACGAAGATGTAGTCGGggttttgagaagaaaaacGT
AGATGGGGTAGTGCGATGCTCGAGACCTATTGTACCGACACCACCTCTCC
CCACAACCGACATAACGACCGACATGTCGACAACAGAAGAGACATCAACA
ACAGATGTTCCGACACAACAACCTGATACAACAAACATAATTACAAGCTC
AGAAACACCGACGACACAGACGACAACCACTACAACAGCAACGACTACTA
CAACAACACCACAGCCTACCACAACAACACCACAGCCTACCACAACTACA
ACAGcAAAACCACCACCAAAAGGTTGCGAGGATACTTTTTGCACAATGTG
TTCAGAAGGTTACCGGAAACTTGTCTTACCTTTTGGTAACAGCACGTGCG
TCGAGCGGTGTCCCGTTGGATTTGCAGCACAAGGAGTTGTGTGTTTAGCT
TGCTCTGATGCCAGATGCGGATCATGTGAGGCTTCAATTTCGGAATGTGA
ACGTTGTCGACCCGGTTTCTCTTTAATGTTGGATGCGAAAAATATTTCGA
CTGAATGCGTTCGATACTGTCCGAAAGGCTACACCACAGAAACAATCAAT
GGAGCACAAGTATGTACCAAGGAAGAAGAAAGAgaatgTCCAGTGGCCAA
CTGTGATCAATGTATAGGCGATTCCCTTGTTCCTCTCAACCGTGGATGCT
TGAAGTGTAAAAAGGGCTTTACATTGTTCAGAGGGTCATTAAGTGACCAT
TGTTACACTGTGTGTCCACCAGGACATAACGAAATCACTGAACCGAAAAC
CAAATCAGCAATCTGTGAAAAATGTAAAATTCCATTTTGTAAAATATGCA
ATCGAGCGGATATATGCGACGCATGCATTGAGCCCATGGTTTTAGACACA
AGTACCAACAGATGTCGTTTCTGTAGAGAATACACAACTTACAGTTATGC
CACAAGGAAATGTGTACCTGTCGACACCAATCAACCAGAATCTAACCTGG
ACAACAATGAGATTGTTTTCGGTGGTCCGTTGGTTGGGTGAGCTTTCCTG
GCAAAGATCACCAGAGCAAAatataaatatcaaaatataactttttagAG
AGAGGAAACTTTTATAAAGACTGTAACAGAATTtaagcgagaaaaaaaag
aaacgttTTATGTACAAACTATTATTATCAAGACCATCTCCATCGAACTA
TCACAATAACAGTATTCTGGAAGATTCATTGATTTTagatgaaaaagaaa
tcatttgAATCTCCAACGATTAAAAACAAATACCAATTCCATAATATCAT
TGCAAAAAAGAAATATGTGGTGCGGATATTAAAGTCGTTTACGGCTGTGG
AGAAAAATCGTGGTGAAAGTGATTAATCGCGTACCTAGCCCTACTAAcac
tactttttgattttactgatggggCCAATCGTGAACACGAATAGTATCAC
GAAAACCTAGAGTGCTATTAGAAACATTAGAAGCAAACTTGAACTAGGAG
ACTGGGACAAGTTTGGGGAGTGATGAAGTATACGACCAGCAACTCAGACT
TTACTATTggtattttacattttacatttCCCGCTGTCTTAAAAGATGTC
TCCAGGTCActggagacaggggtgttttccGCTGGTAACAAAAAAAGTGG
CAAAATAGGTTAGATATTGAACATATGTTTAGTCTAAACCCCCGTCATTG
TTAAGCAATTAGTAGCTTTTGAcctttttgctatatttttttGCCCGAAA
AAAAATATAGGATAATTCTAAATTCATATTCGAAATTAGCGAAGTTAAAA
GTTAGTTTCAGTAACTTAATaaagtgaaaattgaaaatatttggttAAAT
ACCGGGGGGGGACACCTATGCAAAACagggtcagggtcccttttttagcc
tctgaagatatctgactaTAGGTCCAAAAttcactaattttcaagatgtg
catctgacagggtcgacttttggtaaTTTAGAAAGTTAGGTAAGTtagaa
aattttcatcttttggtCGACTTTTAATCAATTTAGCCACGCTGTGAATT
TCTCTTTAGAAGAGATTTCAGTAACTTAATatttcttttaacttttttaa
acctTTAATTTGTTAATCTTTCAGAGTACATCACGTTTTCCCTGTCTAGA
CATGTCTGCGTTGTACATCaatttatcttttcaaaaactgcttCTAAATA
ATTAATACAAATCTTATAATCTTCAGAATCATTCATTTTTTTAGCCCGTT
TATAGTTTTAGGCCTTGAAACTAATTTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_516:89233..94943+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070199 ID=TCONS_00070199|Name=TCONS_00070199|organism=Clytia hemisphaerica|type=transcript|length=5711bp|location=Sequence derived from alignment at scaffold_516:89233..94943+ (Clytia hemisphaerica)
CAGCTTACGTATAATCCTTGAATatttaaattcttaaaattttcttcata ttACAAATTTTAACTTCGATGTTAAATATATCCTAAGTTTGttctgattc ttataaaaagtaacaaattttCATTAGCTCTACAAAAACAGACTGAGTCT TGACGTCATATTGACAAAAATCACACAAATATAAAGTTCACAGGAAAATA GAACTTTAAATAAAAGCTCGCACTGtcatttttggctttcattcTTACAT AAGTATTTGATAGTGATAGAGTCAAGAAAATTTATACACAGTCAAAATGC ACTTTTCATGGGTTTTAATCGCCTGTTTGGTATTTTTGGAATTGCACCAA AACGAGGTCGATGCTCATTGGTTTCGAAACATCAAGCGTAAGATCCGCAT CCGGCCGAAAGTTCCCTTCGTGCGTGGTAAGTAATGCCTTGTATCATATC CATCTCCCTTGCTTTGACCTAAAAGAATAAAGGAGAATGGGAATCCATAT CTTAACTTATAACCTTCTCCTCCTAGGTCGAGCTGACCGTTCCTTTCTTC TTCGATTCGGTATTCCTATTCCAACGATTAAACCATTTTTACGGCACCTC CCTTCTAGGCTACACGCATCCCTTCGTTTGTATATGAGATCTCtctaaat ttcattaaatctgaatcaaaattttgaatggcTCTAGGAaaatacaatca ttggatttctgAACCTTCAAATTTGtgatttcttaaaaatttacttGTCT TATAGGAAGTTTATGTCGCATGCGCCATCATCGAACGATAGTGGATGAGA ACAATCGTTATGTGAAATGTGTACGCAGTTGCCCAAGTACTGGATACCAA GAACTATATTCCGTTCGATGGGGACATTACTGTAAACCTGTCGGTCAGTT GCCAACAATTCACTTTTGAAAGAACACTTATGCGAGGTTTTATTTACGTT GATGAACATCATCAGTATACAGCCAAAAGCTAATAATACGCCGGGAGCGT GTCTCATACTTAAACTGATTTTATAAATTTCATCATTATTGATAATTACT GCCGTTAACACATTAAAGCTTGAATCGAGCTCAAGCCTTCCCATAGCTAA AATGACATCCCTTTTAACAGAACCACAGTTTATATGAAAAGCAGGATATC TTCAGATCTTTCTAGAAGCTTAAGCCTCCCAATGCTACCCGAAGATCTTT TAGTAAAACAATAAGGTCTAGACCGTTCGCCTAGTGAAAGTAAGCTGATT TACTATTCATTTTTCCTTACAGTGATTCCAAAGGGTTGTTCAGATCAATA TTGCAACACATGCATCGCATCATATAAATGGATATTCGATGCTACCCGAT ATCGTTCAAAATGTGTCCGGAAATGTCCGAGTGGTTATCGAGAACGCATG CCTAGATGCGAGAGTAAGTAACTAGGAGTCTATAGTATATAGTTGTTGGA TAGTTTGCGATCTAAAGACAGCATGGGTTATAAAGGTTTGAGTAAATCTT AAGAGAAAACCTTACACTTTTCTTTGAAGGGCTAAAGGTCGATAGTCACA ATACTACCTCCCCTCAAATAACTACTTGAGTTTGATCTAATTCTTAGAAT GCTTGGTCAATAATTGCCAACGCTGCGAAAACGATTTGTGGAGATGTAGC AAGTGTAAATGGGGTCTTGCATTACAAAGGACATACATGGGATCTACACT CTGTCTACGAAGATGTAGTCGGggttttgagaagaaaaacGTAGATGGGG TAGTGCGATGCTCGAGACCTATTGTACCGACACCACCTCTCCCCACAACC GACATAACGACCGACATGTCGACAACAGAAGAGACATCAACAACAGATGT TCCGACACAACAACCTGATACAACAAACATAATTACAAGCTCAGAAACAC CGACGACACAGACGACAACCACTACAACAGCAACGACTACTACAACAACA CCACAGCCTACCACAACAACACCACAGCCTACCACAACTACAACAGGTAT CTCctttgaaaataattgacaTACTTGCCCTCAGCAGTTTCCGtatagaa aaataataatatttattAGGCTTTACTCATCCCagtatttgatatttttt ctgaaattgcaAGCTTTCACGCATTTTTGTCTCGAAATTTACGGTATTTT CAAAAGTAGGGGAATTTTTTTCGgtaatatttttagaaaattgaaaaatt gcaaatcaaatcttttttttagcAAAACCACCACCAAAAGGTTGCGAGGA TACTTTTTGCACAATGTGTTCAGAAGGTTACCGGAAACTTGTCTTACCTT TTGGTAACAGCACGTGCGTCGAGCGGTGTCCCGTTGGATTTGCAGCACAA GGAGTTGTGTGTTTAGGTAAGAATATTTTTCCGATCTCATCTGGCGTCAG CGAATCGTTGAATGTTACCTGATATTGAAAAGGAAAACATAATTATATAT TACAATATCCCTTATCTAAGTACACACAATGATTTTTGACCTAGAATAAC ACGCATGGTTTTAGTAATGTGTCcaaaaaacattgaaactttGAACGAAG AAtttctaattgttttttttttttaatcctttATGAAATGACAGTTTGGA GTAATTATCataaattatatttcaataCAGCTTGCTCTGATGCCAGATGC GGATCATGTGAGGCTTCAATTTCGGAATGTGAACGTTGTCGACCCGGTTT CTCTTTAATGTTGGATGCGAAAAATATTTCGACTGAATGCGTTCGATACT GTCCGAAAGGCTACACCACAGAAACAATCAATGGAGCACAAGTATGTACC AAGGAAGAAGAAAGAggtaaaaatgtttattttttatgcGGCGGATTATC AGGTAGCACGTCACAGTTCCATATGACAGTTTCATTCTATCTAGgacgat ttttcaaagattctacAGCTCAATGTCTTCATAAATTATTGATTGATACG AGACCTGATGATCCTTCAACAGAACCAGAACCTATCAGTACTAGAATCCT CGCAGATAAACATAATCAAAAGTACTCTTGAATGTAGGATGTGGGAGAAG TCCACCAAAAGAGCTAAGCTctggtttagacggcccacttttaaCCCTGC CTATGTTTCAATTGTTAATTAAGAAAGTTTCTCAACTAGAAAACTAAATG CTTGCGATCAATTTCGAGTGTTAAACAATACACAGTATGGGAAGTCTTTT TATAGTCTTTTAATACGTCCCTGCCTGGCTGTCTACCGGTGGAGCTCGAC AATTTTAAATGCtgataaatttattttcgaatttCCAAATAAGTACGAAA CTTCAGGGTATTCTACCCTTCCTTAGAGAAAGTTCCATCTAGTTCCAACG GGGTCTATAACATGAGGATGTTACCGTACCAAACATAATGTCATATATAT CACATTTAACGAATAAATAATctgatgaaattttgttttagaatgTCCAG TGGCCAACTGTGATCAATGTATAGGCGATTCCCTTGTTCCTCTCAACCGT GGATGCTTGAAGTGTAAAAAGGGCTTTACATTGTTCAGAGGGTCATTAAG TGACCATTGTTACACTGTGTGTCCACCAGGACATAACGAAATCACTGAAC CGAAAACCAAATCAGCAATCTGTGAAAGTAAGTTGTTATGATTTGATCTT TGTAGATAATCCAGATGTATTTCAGAGTTTACTATGAGATAAAGTTTAGA AAGACTCCAACGGGAAAACAATAGGGAGGAACGGAATACTAAAGTGTGGA AGAAGATATTGTAAAAAATCCATGATTTTGAAGGTTTTAGTTTTACAAAA GTgatcccgtttcatatcagacacatgtttcatataagggcagttttact ctttctaaccaatcttgctccacatccgtgtcaattcaatgtgtaaaagc ttgtaaattaaaattgatgagtaagcaaacgatatcactcttatttaaaa acaaaacctttaataacaAGTTTGAGGATAATTTACAACAATCCTACGAT TTTCTCACTCAATTTCTCTCTTGTAGAATGTAAAATTCCATTTTGTAAAA TATGCAATCGAGCGGATATATGCGACGCATGCATTGAGCCCATGGTTTTA GACACAAGTACCAACAGATGTCGTTTCTGTAGAGAATACACAACTTACAG TTATGCCACAAGGAAATGTGTACCTGTCGGTGAGTGGAATATTCTCATCC CCTATACTAACCAGTACAGTGGAGTTCCACatacctctacaactcgaatg tctcctttaaACAAATTTTCTAGTCCTATACTGTAATCCCTTCACTGGAC AATGCATTATAAACCCGTATGAAATAGGCGTGGTCATCTTAAATCATTTA AAGGCTCCCCGAATCTATAAGCATCATATTCATACCTTTTAGCTTTTCTT TCAGACACCAATCAACCAGAATCTAACCTGGACAACAATGAGATTGTTTT CGGTGGTCCGTTGGTTGGGTGAGCTTTCCTGGCAAAGATCACCAGAGCAA AatataaatatcaaaatataactttttagAGAGAGGAAACTTTTATAAAG ACTGTAACAGAATTtaagcgagaaaaaaaagaaacgttTTATGTACAAAC TATTATTATCAAGACCATCTCCATCGAACTATCACAATAACAGTATTCTG GAAGATTCATTGATTTTagatgaaaaagaaatcatttgAATCTCCAACGA TTAAAAACAAATACCAATTCCATAATATCATTGCAAAAAAGAAATATGTG GTGCGGATATTAAAGTCGTTTACGGCTGTGGAGAAAAATCGTGGTGAAAG TGATTAATCGCGTACCTAGCCCTACTAAcactactttttgattttactga tggggCCAATCGTGAACACGAATAGTATCACGAAAACCTAGAGTGCTATT AGAAACATTAGAAGCAAACTTGAACTAGGAGACTGGGACAAGTTTGGGGA GTGATGAAGTATACGACCAGCAACTCAGACTTTACTATTggtattttaca ttttacatttCCCGCTGTCTTAAAAGATGTCTCCAGGTCActggagacag gggtgttttccGCTGGTAACAAAAAAAGTGGCAAAATAGGTTAGATATTG AACATATGTTTAGTCTAAACCCCCGTCATTGTTAAGCAATTAGTAGCTTT TGAcctttttgctatatttttttGCCCGAAAAAAAATATAGGATAATTCT AAATTCATATTCGAAATTAGCGAAGTTAAAAGTTAGTTTCAGTAACTTAA TaaagtgaaaattgaaaatatttggttAAATACCGGGGGGGGACACCTAT GCAAAACagggtcagggtcccttttttagcctctgaagatatctgactaT AGGTCCAAAAttcactaattttcaagatgtgcatctgacagggtcgactt ttggtaaTTTAGAAAGTTAGGTAAGTtagaaaattttcatcttttggtCG ACTTTTAATCAATTTAGCCACGCTGTGAATTTCTCTTTAGAAGAGATTTC AGTAACTTAATatttcttttaacttttttaaacctTTAATTTGTTAATCT TTCAGAGTACATCACGTTTTCCCTGTCTAGACATGTCTGCGTTGTACATC aatttatcttttcaaaaactgcttCTAAATAATTAATACAAATCTTATAA TCTTCAGAATCATTCATTTTTTTAGCCCGTTTATAGTTTTAGGCCTTGAA ACTAATTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043723XLOC_043723Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070199-exon-scaffold_516-1491911889:89233..89658TCONS_00070199-exon-scaffold_516-1491911889:89233..89658Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:89233..89658TCONS_00070199-exon-scaffold_516-1510915933:89233..89658Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:89233..89658TCONS_00070199-exon-scaffold_516-1575043694:89233..89658Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:89988..90125TCONS_00070199-exon-scaffold_516-1491911889:89988..90125Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:89988..90125TCONS_00070199-exon-scaffold_516-1510915933:89988..90125Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:89988..90125TCONS_00070199-exon-scaffold_516-1575043694:89988..90125Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:90505..90645TCONS_00070199-exon-scaffold_516-1491911889:90505..90645Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:90505..90645TCONS_00070199-exon-scaffold_516-1510915933:90505..90645Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:90505..90645TCONS_00070199-exon-scaffold_516-1575043694:90505..90645Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:90830..91228TCONS_00070199-exon-scaffold_516-1491911889:90830..91228Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:90830..91228TCONS_00070199-exon-scaffold_516-1510915933:90830..91228Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:90830..91228TCONS_00070199-exon-scaffold_516-1575043694:90830..91228Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:91455..91598TCONS_00070199-exon-scaffold_516-1491911889:91455..91598Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:91455..91598TCONS_00070199-exon-scaffold_516-1510915933:91455..91598Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:91455..91598TCONS_00070199-exon-scaffold_516-1575043694:91455..91598Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:91863..92048TCONS_00070199-exon-scaffold_516-1491911889:91863..92048Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:91863..92048TCONS_00070199-exon-scaffold_516-1510915933:91863..92048Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:91863..92048TCONS_00070199-exon-scaffold_516-1575043694:91863..92048Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:92674..92859TCONS_00070199-exon-scaffold_516-1491911889:92674..92859Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:92674..92859TCONS_00070199-exon-scaffold_516-1510915933:92674..92859Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:92674..92859TCONS_00070199-exon-scaffold_516-1575043694:92674..92859Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:93259..93411TCONS_00070199-exon-scaffold_516-1491911889:93259..93411Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:93259..93411TCONS_00070199-exon-scaffold_516-1510915933:93259..93411Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:93259..93411TCONS_00070199-exon-scaffold_516-1575043694:93259..93411Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1491911889:93637..94943TCONS_00070199-exon-scaffold_516-1491911889:93637..94943Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1510915933:93637..94943TCONS_00070199-exon-scaffold_516-1510915933:93637..94943Clytia hemisphaericaexon
TCONS_00070199-exon-scaffold_516-1575043694:93637..94943TCONS_00070199-exon-scaffold_516-1575043694:93637..94943Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_516supercontigscaffold_516:89233..94943 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0 0 0.960575 0 0.361997 0.30443 2.73246 0.740367 0.534651 0.43903 0.293378 0.0823539 0 0 1.03208 2.1033 5.95931 7.19098 0 0 13.2194 14.8106 2.64496 4.55584 3.33619 3.44952
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070199 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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