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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070189 ID=TCONS_00070189|Name=TCONS_00070189|organism=Clytia hemisphaerica|type=transcript|length=1491bp
GTCAGTGACGAAGTCTTATCCAAACTCAACAACGAAAGACCAGTCTACAC
GCCAAGCAACTTCAAAACGCTCAAACGTCTGAAATCCAAGAAAACGATAG
ACGTTTCTAGGAGAGATAGCGCACCATCCGTTGTCATAACGACTAGCTCA
CAAGTGGATTCGGATAGCGcgcaaaaacaacaaaagcgaCAGATCGANAA
ACTAGCATTGCGTGAACCCAACATGACTTTAGAGTTTTTAGACGAATGTA
TCAGCTGTTTCGCCAAATCTAACGATGAGTCACGAAATTTGTGTCTAAAT
TATATGGCTCCATGGTTTCCTAATCTAGCAAGATATTGTGGGTTAACAAG
GAACGATCCAAACAAACTACAAATGATGGAGATTGTGAAAAAGTTGATCG
ATCTTACTATCTCTAATCGTCAGAACTATCCATTCATACAAGCGTCAGTG
TGGGCGAATATTGGTAAAATACCAGACCTCCTCGACGTTGTGCTTGATCT
TTTTATGAAGACGAGTACAGCCGGAGGATTCAACAGCGAGAAAGCAGAAG
TACTGGCTGATACCAGTGTTACGTTAGCATCTGCAAATGTCGCTCACGTA
TCCAAGAAAATACTCGACAAATTCCATACGGTGATCGACCGAACGAGGAT
ATCGCACGTCGAAAGTTTGGAAAGACATCTGATGTGGGACGATATTGCCA
TTTTGGCGCGCTATTTATTGATGTTATCATTCAACGACTCTTTAGACGTA
TTGCAACATTTGCCAGACATTTTCCACATCGTGACGTTGTTGGTATCATC
CGGTCCTGTATCATTACGGGCTTCCATCCACGGTCTTGTCATCAACTCTT
TGCAAAGTTTATTGACTTGTGAAATGAAATTGAGTGATAAAACTCAATTA
CTGATACGAAAGAAGTTGGAGGATCTTTCATTACAGAAGTTCTACCTTCT
CTTTGGTATTTCGAACGTGAAATCGACACCAGTCAAAGCGTTCGTCACGC
AAACCAAAGTCAATCGAACATTTTATTCGAAACTGAAATCAAGAGAAGCT
GACACTGAAATCTCCTTATCTTCGCTGGAAGTCATTGCAGAAACCTTACT
GTCAATCGTTGAGGCTTGTtgcaaagatttgaaaaacgaTAACTGGATCG
ACCGATGGACGGCACTTTGTTCAAGTCACTGTTACGATTACAATCCAGCC
ATTCAACCACGTTGCAATGTTGTGTTGGGAGTGATCAGTAAAGAAAGCAA
AGAAGATGATATCAACAGGGCACTTGATGTTTTGACTAAGGCGACTGGTG
TTTATCAAGATTTCAATTTAGCGGAAGCCACGCTGATGTGCTTGGCCAAA
TATCAAGCTCTCCTTAAAAAGGATTCGAGTTTCCACAAAATATATATCGC
CAACAGCTAGCGGAAGATTGTTGCAGGTGTTGGCAATGGTGGCTGTCAGT
GTTTCCCATTGTAGGATTGAAAGTCTTTGATTGTTGAAGNN Run BLAST on NCBI protein sequence of TCONS_00070189-protein >TCONS_00070189-protein ID=TCONS_00070189-protein|Name=TCONS_00070189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=469bp
VSDEVLSKLNNERPVYTPSNFKTLKRLKSKKTIDVSRRDSAPSVVITTSS
QVDSDSAQKQQKRQIXKLALREPNMTLEFLDECISCFAKSNDESRNLCLN
YMAPWFPNLARYCGLTRNDPNKLQMMEIVKKLIDLTISNRQNYPFIQASV
WANIGKIPDLLDVVLDLFMKTSTAGGFNSEKAEVLADTSVTLASANVAHV
SKKILDKFHTVIDRTRISHVESLERHLMWDDIAILARYLLMLSFNDSLDV
LQHLPDIFHIVTLLVSSGPVSLRASIHGLVINSLQSLLTCEMKLSDKTQL
LIRKKLEDLSLQKFYLLFGISNVKSTPVKAFVTQTKVNRTFYSKLKSREA
DTEISLSSLEVIAETLLSIVEACCKDLKNDNWIDRWTALCSSHCYDYNPA
IQPRCNVVLGVISKESKEDDINRALDVLTKATGVYQDFNLAEATLMCLAK
YQALLKKDSSFHKIYIANS Run BLAST on NCBI transcript from alignment at scaffold_515:31175..32665 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070189 ID=TCONS_00070189|Name=TCONS_00070189|organism=Clytia hemisphaerica|type=transcript|length=1491bp|location=Sequence derived from alignment at scaffold_515:31175..32665 (Clytia hemisphaerica)
NNCTTCAACAATCAAAGACTTTCAATCCTACAATGGGAAACACTGACAGC
CACCATTGCCAACACCTGCAACAATCTTCCGCTAGCTGTTGGCGATATAT
ATTTTGTGGAAACTCGAATCCTTTTTAAGGAGAGCTTGATATTTGGCCAA
GCACATCAGCGTGGCTTCCGCTAAATTGAAATCTTGATAAACACCAGTCG
CCTTAGTCAAAACATCAAGTGCCCTGTTGATATCATCTTCTTTGCTTTCT
TTACTGATCACTCCCAACACAACATTGCAACGTGGTTGAATGGCTGGATT
GTAATCGTAACAGTGACTTGAACAAAGTGCCGTCCATCGGTCGATCCAGT
TAtcgtttttcaaatctttgcaACAAGCCTCAACGATTGACAGTAAGGTT
TCTGCAATGACTTCCAGCGAAGATAAGGAGATTTCAGTGTCAGCTTCTCT
TGATTTCAGTTTCGAATAAAATGTTCGATTGACTTTGGTTTGCGTGACGA
ACGCTTTGACTGGTGTCGATTTCACGTTCGAAATACCAAAGAGAAGGTAG
AACTTCTGTAATGAAAGATCCTCCAACTTCTTTCGTATCAGTAATTGAGT
TTTATCACTCAATTTCATTTCACAAGTCAATAAACTTTGCAAAGAGTTGA
TGACAAGACCGTGGATGGAAGCCCGTAATGATACAGGACCGGATGATACC
AACAACGTCACGATGTGGAAAATGTCTGGCAAATGTTGCAATACGTCTAA
AGAGTCGTTGAATGATAACATCAATAAATAGCGCGCCAAAATGGCAATAT
CGTCCCACATCAGATGTCTTTCCAAACTTTCGACGTGCGATATCCTCGTT
CGGTCGATCACCGTATGGAATTTGTCGAGTATTTTCTTGGATACGTGAGC
GACATTTGCAGATGCTAACGTAACACTGGTATCAGCCAGTACTTCTGCTT
TCTCGCTGTTGAATCCTCCGGCTGTACTCGTCTTCATAAAAAGATCAAGC
ACAACGTCGAGGAGGTCTGGTATTTTACCAATATTCGCCCACACTGACGC
TTGTATGAATGGATAGTTCTGACGATTAGAGATAGTAAGATCGATCAACT
TTTTCACAATCTCCATCATTTGTAGTTTGTTTGGATCGTTCCTTGTTAAC
CCACAATATCTTGCTAGATTAGGAAACCATGGAGCCATATAATTTAGACA
CAAATTTCGTGACTCATCGTTAGATTTGGCGAAACAGCTGATACATTCGT
CTAAAAACTCTAAAGTCATGTTGGGTTCACGCAATGCTAGTTTNTCGATC
TGtcgcttttgttgtttttgcgCGCTATCCGAATCCACTTGTGAGCTAGT
CGTTATGACAACGGATGGTGCGCTATCTCTCCTAGAAACGTCTATCGTTT
TCTTGGATTTCAGACGTTTGAGCGTTTTGAAGTTGCTTGGCGTGTAGACT
GGTCTTTCGTTGTTGAGTTTGGATAAGACTTCGTCACTGAC Coding sequence (CDS) from alignment at scaffold_515:31175..32665 >TCONS_00070189 ID=TCONS_00070189|Name=TCONS_00070189|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at scaffold_515:31175..32665 (Clytia hemisphaerica)
CTAGCTGTTGGCGATATATATTTTGTGGAAACTCGAATCCTTTTTAAGGA
GAGCTTGATATTTGGCCAAGCACATCAGCGTGGCTTCCGCTAAATTGAAA
TCTTGATAAACACCAGTCGCCTTAGTCAAAACATCAAGTGCCCTGTTGAT
ATCATCTTCTTTGCTTTCTTTACTGATCACTCCCAACACAACATTGCAAC
GTGGTTGAATGGCTGGATTGTAATCGTAACAGTGACTTGAACAAAGTGCC
GTCCATCGGTCGATCCAGTTAtcgtttttcaaatctttgcaACAAGCCTC
AACGATTGACAGTAAGGTTTCTGCAATGACTTCCAGCGAAGATAAGGAGA
TTTCAGTGTCAGCTTCTCTTGATTTCAGTTTCGAATAAAATGTTCGATTG
ACTTTGGTTTGCGTGACGAACGCTTTGACTGGTGTCGATTTCACGTTCGA
AATACCAAAGAGAAGGTAGAACTTCTGTAATGAAAGATCCTCCAACTTCT
TTCGTATCAGTAATTGAGTTTTATCACTCAATTTCATTTCACAAGTCAAT
AAACTTTGCAAAGAGTTGATGACAAGACCGTGGATGGAAGCCCGTAATGA
TACAGGACCGGATGATACCAACAACGTCACGATGTGGAAAATGTCTGGCA
AATGTTGCAATACGTCTAAAGAGTCGTTGAATGATAACATCAATAAATAG
CGCGCCAAAATGGCAATATCGTCCCACATCAGATGTCTTTCCAAACTTTC
GACGTGCGATATCCTCGTTCGGTCGATCACCGTATGGAATTTGTCGAGTA
TTTTCTTGGATACGTGAGCGACATTTGCAGATGCTAACGTAACACTGGTA
TCAGCCAGTACTTCTGCTTTCTCGCTGTTGAATCCTCCGGCTGTACTCGT
CTTCATAAAAAGATCAAGCACAACGTCGAGGAGGTCTGGTATTTTACCAA
TATTCGCCCACACTGACGCTTGTATGAATGGATAGTTCTGACGATTAGAG
ATAGTAAGATCGATCAACTTTTTCACAATCTCCATCATTTGTAGTTTGTT
TGGATCGTTCCTTGTTAACCCACAATATCTTGCTAGATTAGGAAACCATG
GAGCCATATAATTTAGACACAAATTTCGTGACTCATCGTTAGATTTGGCG
AAACAGCTGATACATTCGTCTAAAAACTCTAAAGTCATGTTGGGTTCACG
CAATGCTAGTTTNTCGATCTGtcgcttttgttgtttttgcgCGCTATCCG
AATCCACTTGTGAGCTAGTCGTTATGACAACGGATGGTGCGCTATCTCTC
CTAGAAACGTCTATCGTTTTCTTGGATTTCAGACGTTTGAGCGTTTTGAA
GTTGCTTGGCGTGTAGACTGGTCTTTCGTTGTTGAGTTTGGATAAGACTT
CGTCACTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070189-exon-scaffold_515-1491911889:31175..32665 | TCONS_00070189-exon-scaffold_515-1491911889:31175..32665 | Clytia hemisphaerica | exon |
| TCONS_00070189-exon-scaffold_515-1510915933:31175..32665 | TCONS_00070189-exon-scaffold_515-1510915933:31175..32665 | Clytia hemisphaerica | exon |
| TCONS_00070189-exon-scaffold_515-1575043694:31175..32665 | TCONS_00070189-exon-scaffold_515-1575043694:31175..32665 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_515 | supercontig | scaffold_515:31175..32665 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011989 | ARM-like |
Blast
BLAST of TCONS_00070189 vs. Swiss-Prot (Human)
Match: NF1 (Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2) HSP 1 Score: 393.66 bits (1010), Expect = 9.261e-121 Identity = 203/404 (50.25%), Postives = 271/404 (67.08%), Query Frame = 1
Query: 202 LALREPNMTLEFLDECISCFAKSNDESRNLCLNYMAPWFPNLARYCGLTRNDPNKLQMMEIVKKLIDLTISNRQNYPFIQASVWANIGKIPDLLDVVLDLFMKTSTAGGFNSEKAEVLADTSVTLASANVAHVSKKILDKFHTVIDRTRISHVESLERHLMWDDIAILARYLLMLSFNDSLDVLQHLPDIFHIVTLLVSSGPVSLRASIHGLVINSLQSLLTC-EMKLSDKTQLLIRKKLEDLSLQKFYLLFGISNVKSTPVKAFVTQTKVNRTFYSKLKSREADTEISLSSLEVIAETLLSIVEACCKDLKNDNWIDRWTALCSSHCYDYNPAIQPRCNVVLGVISKESKEDDINRALDVLTKA-------TGVYQDFNLAEATLMCLAKYQALLKKDSSFHK 1389
LA EP++TLEFL+ECIS F+KS+ E ++LCL YM PW NL R+C +D + ++ I+ KLI +TI+ +Q YP IQA +W ++G+I DLLDVVLD F+KTS GG S KAEV+ADT+V LAS NV VS K++ + +ID+T +S +LE+HLMWDDIAILARY+LMLSFN+SLDV HLP +FH+VT LV++GP+SLRAS HGLVIN + SL TC ++ S++T+ ++R L + SL KFYLLFGIS VKS V AF + + +R+F RE +L+SLE + E LL I+EAC +D+ W+D+WT L + YNP++QPR VV G ISK I + + +L+KA Y L EAT++ L K Q LL KDS HK
Sbjct: 1915 LAANEPHLTLEFLEECISGFSKSSIELKHLCLEYMTPWLSNLVRFCK-HNDDAKRQRVTAILDKLITMTINEKQMYPSIQAKIWGSLGQITDLLDVVLDSFIKTSATGGLGSIKAEVMADTAVALASGNVKLVSSKVIGRMCKIIDKTCLSPTPTLEQHLMWDDIAILARYMLMLSFNNSLDVAAHLPYLFHVVTFLVATGPLSLRASTHGLVINIIHSLCTCSQLHFSEETKQVLRLSLTEFSLPKFYLLFGISKVKSAAVIAFRSSYR-DRSFSPGSYERET---FALTSLETVTEALLEIMEACMRDIPTCKWLDQWTELAQRFAFQYNPSLQPRALVVFGCISKRVSHGQIKQIIRILSKALESCLKGPDTYNSQVLIEATVIALTKLQPLLNKDSPLHK 2313
The following BLAST results are available for this feature:
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