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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070164 ID=TCONS_00070164|Name=TCONS_00070164|organism=Clytia hemisphaerica|type=transcript|length=5820bpRun BLAST on NCBI protein sequence of TCONS_00070164-protein >TCONS_00070164-protein ID=TCONS_00070164-protein|Name=TCONS_00070164-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1909bp MDLFVVALSEISLEGLEGVSINKLWELIDKRQPPVDCAIDQWTKPSIWEDRun BLAST on NCBI transcript from alignment at scaffold_514:33055..86391+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070164 ID=TCONS_00070164|Name=TCONS_00070164|organism=Clytia hemisphaerica|type=transcript|length=53337bp|location=Sequence derived from alignment at scaffold_514:33055..86391+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_514:33055..86391+ >TCONS_00070164 ID=TCONS_00070164|Name=TCONS_00070164|organism=Clytia hemisphaerica|type=CDS|length=183264bp|location=Sequence derived from alignment at scaffold_514:33055..86391+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00070164 vs. Swiss-Prot (Human)
Match: TF3C1 (General transcription factor 3C polypeptide 1 OS=Homo sapiens GN=GTF3C1 PE=1 SV=4) HSP 1 Score: 135.961 bits (341), Expect = 1.236e-31 Identity = 99/321 (30.84%), Postives = 162/321 (50.47%), Query Frame = 3
Query: 3459 KSKRVQQAMNHDETDREALRLMKGLRVSFTEREDAYILLADIVRNIMNLSAKGQPLEKEHPKILWRAIRDILHKDIPESKDKTWNAINRRARYIKKYPHSLIVYKTCMAELEQNKDFMGSIKCTKDNWKE------KLNHFFNATREIYS---RHFNQPVTLDGFPSTFEELFRDYEVDYADKEKEDESSKLQPRTEKSIRTNIIRDLVHNAMIAQRSS--AYKPSLAFKLFDVYTEEDVRKAFEHFKKNRLVSRLRCD----LPRSRSLPVTTMTYTLSSQTYDRIFEPPMPLKMFSAARCFYFQLRDGKKHTGKCAEKD 4376
KSKR++ HDE D+ AL+ M LRV+++ +ED ++L I N++N KG P + W+ +RDILH ES DKT +++ RRARYI K P + + YK C+AE+ Q+K +G + ++ + + F +E +S R+ N + P T +ELF Y V EK+ + + + I ++++L+ + + S +Y+ F+L+ Y + + KAF +K LV+R R + ++R+LP M+Y L SQTY RIF P + + + FQ D + GK + D
Sbjct: 1240 KSKRLRY---HDEADQSALQRMTRLRVTWSMQEDGLLVLCRIASNVLNTKVKG-------PFVTWQVVRDILHATFEESLDKTSHSVGRRARYIVKNPQAYLNYKVCLAEVYQDKALVGDFMNRRGDYDDPKVCANEFKEFVEKLKEKFSSALRNSNLEI-----PDTLQELFARYRVLAIGDEKDQTRKEDELNSVDDIHFLVLQNLIQSTLALSDSQMKSYQSFQTFRLYREYKDHVLVKAFMECQKRSLVNRRRVNHTLGPKKNRALPFVPMSYQL-SQTYYRIFTWRFPSTICTES----FQFLDRMRAAGKLDQPD 1540 HSP 2 Score: 126.716 bits (317), Expect = 9.216e-29 Identity = 139/578 (24.05%), Postives = 239/578 (41.35%), Query Frame = 3
Query: 1572 HEKSKVSLRPLARKNFILDALQKQPVYEGYNELYKLLVVSEDATKSTTGTCCRKTFRKIIRSLAQEKQLNEIMITIDETCIPPLQSLFICASQISEESDEL-KIIVDQVKVRHEKHIQRREMRYAATKKEPGXXXXXXXXXXXXXXXXXXEKSIKLEGSHGDSTTVDQSSEVAETETSLEKIENVDMESDTDDEEFAKSKMTGRYLSSFSKYFTYGRFQRLHVLHMFLWQLVYGTPEDLT-----------------------------CFEYCPE-----------------------YMDLIKSQRMWLEHAHGLPTYSQ-GKGWFNVGDIISLMPLELTCRILGIKCWSNTAIKFLEDPKRRFTRMCDLPTRLKFKLLASTANKQHLDNCVDLLVLLAQMGLIAVPHNFYPKVRSEIMLYLRREAVITDTRYSEKGYCHIRLPHNSEEFPKTEYKFKVVKDLKSFWEDLQFICLNTPLGLSRITRSR------EGIPEEKELNKEQLS-MGKAGINQTSSSKGLGRNYRSFTILRDFQSYYENKDFNNMEPNVFGNGLGAGGLDSIFFAHLVKNW 3122
+K + R L R+N I++A+ + E + K+ ++ ++ + + CC+K+ +++R+L++E L T+ + I L + S +++D L + ++QV+ R ++ + G A E S EG G + +S +E+ ++K +N + + GR L K RL V+HMFLW L+YG P T +E C E Y+D W+ + +P + G GW V DI+ +PL + +I+ + + +FL DP ++ T + LP ++ +LL ++++ + V+ L L MGL+ + + ++ ++L++ AVI DT + H L +S F + Y ++D++++W DLQ +CLNTPLG+ R R R +G EE L KEQ S M K + R +L E D E + G+GLGA GLDS F+ HL +NW
Sbjct: 605 QDKPHETYRLLKRRNLIIEAVTNLRLIESLFTIQKM-IMDQEKQEGVSTKCCKKSIVRLVRNLSEEGLLRLYRTTVIQDGIKKKVDLVVHPSM--DQNDPLVRSAIEQVRFRISNSSTANRVKTSQPPVPQGEAE---------------EDSQGKEGPSGSGDSQLSASSRSES-GRMKKSDNKMGITPLRNYHPIVVPGLGRSLGFLPK------MPRLRVVHMFLWYLIYGHPASNTVEKPSFISERRTIKQESGRAGVRPSSSGSAWEACSEAPSKGSQDGVTWEAEVELATETVYVD----DASWMRYIPPIPVHRDFGFGWALVSDILLCLPLSIFIQIVQVSYKVDNLEEFLNDPLKKHTLIRFLPRPIRQQLLY---KRRYIFSVVENLQRLCYMGLLQFGPTEKFQDKDQVFIFLKKNAVIVDTTICDP---HYNLARSSRPFERRLYVLNSMQDVENYWFDLQCVCLNTPLGVVRCPRVRKNSSTDQGSDEEGSLQKEQESAMDKHNLE------------RKCAMLEYTTGSREVVD----EGLIPGDGLGAAGLDSSFYGHLKRNW 1131 HSP 3 Score: 118.242 bits (295), Expect = 3.188e-26 Identity = 119/468 (25.43%), Postives = 213/468 (45.51%), Query Frame = 3
Query: 93 MDLFVVALSEISLEGLEGVSINKLWELIDKRQPPVDCAIDQWTKPSIWEDIVLSEHIEFYA-----VDFNTEKR-------PGIPQNKKEERVAKKM-PPNWINDYRTGIMGYCQSYFYRDCVTDVIRNEKDRSVKMTYIEAVEKWGDELHLVASQGCRQRILFGNNYPPIIEEVTAPRF--IILEIIGRSRWEGFMQADFQ-RLFGMDSRTSFHHVKVLIQLHLMTKQSVLVKNNKNCPVGGKVEPPRCSKVLHLRQFSSVFTNQIQRTAQRICSILEEAPDQTIERNQLKEMCSVQDVTRFKKIRQWLFNLGYIQYIVNGEIWSHDNTNPIQLTHFRASRPCYVNLVKPFDAQDVDDDKDEFLDYIENCDDIEP-QLVMEETLHSQAYQILLAVREKGITMKKLAEILCIPHYMARSVIRFFDTNKIGRLISVDHLKQKVQKIVAIQFLHESDTVQEIQSNKIKIE 1445
MD L E++LEGL+G+ + LW ++ R PP ++ T+ +W + I FY D + R GI +++++ + + P + I + + GI G C+ + R +T+ IR K + T +EA ++WG +L +VASQ R R L G P ++ P F ILE +GRSRW+G +Q D F +D+ +H K+L + L+T QS +++ P G + + S +L L +F ++ +++ +L + +L+E + + T FK++ Q++ N G + + H P + + L+K F D DDD+DE + + P +V E + +Q Y ++ KGI+ ++ + + AR + R K+ + D +Q+ K ++ F ESD ++ Q K + E
Sbjct: 1 MDALESLLDEVALEGLDGLCLPALWSRLETRVPPFPLPLEPCTQEFLWRALATHPGISFYEEPRERPDLQLQDRYEEIDLETGILESRRDPVALEDVYPIHMILENKDGIQGSCRYFKERKNITNDIRT-KSLQPRCTMVEAFDRWGKKLIIVASQAMRYRALIGQEGDP---DLKLPDFSYCILERLGRSRWQGELQRDLHTTAFKVDAGKLHYHRKILNKNGLITMQSHVIR----LPTGAQ----QHSILLLLNRFHVDRRSKYDILMEKLSVMLSTRTNHIETLGKLREELGLCERT-FKRLYQYMLNAGLAKVVSLRLQEIHPECGPCKTKKGTDVMVRCLKLLKEFKRNDHDDDEDEEV----ISKTVPPVDIVFERDMLTQTYDLIERRGTKGISQAEIRVAMNVGKLEARMLCRLLQRFKVVKGFMEDEGRQRTTKYISCVFAEESDLSRQYQREKARSE 451 The following BLAST results are available for this feature:
BLAST of TCONS_00070164 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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