TCONS_00070155 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070155
Unique NameTCONS_00070155
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length353

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070155 ID=TCONS_00070155|Name=TCONS_00070155|organism=Clytia hemisphaerica|type=transcript|length=353bp
CAGCTTTCCGTGACTTTAGAGAACGGATTACCGCGCGCAAATATGCGAGA
TTTTTCACCATACAAAACGTCTCTGAATACACCGCTCCGCGGTCgataaa
ggtacgtgcacacaatatagcaaaactgcttcgctcataaattcgcttcg
caaaaactTTGAAGGACAAAGAGATGAAAGGcatattcaatgatgtatct
atttaaatGTCCAAGTGTTTAGGGAATTGAAAGCCTGGAGGCTGGTTTAA
CAATTGTGTGTGATGAATTATTAAGAGCCATTATCTGTAAAGAATCAGGA
TCAGGCAGGGTGAGGAAGTAACTTTCTCAGAattatctcatttttatata
tat
Run BLAST on NCBI

transcript from alignment at scaffold_513:448105..448457

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070155 ID=TCONS_00070155|Name=TCONS_00070155|organism=Clytia hemisphaerica|type=transcript|length=353bp|location=Sequence derived from alignment at scaffold_513:448105..448457 (Clytia hemisphaerica)
atatatataaaaatgagataatTCTGAGAAAGTTACTTCCTCACCCTGCC
TGATCCTGATTCTTTACAGATAATGGCTCTTAATAATTCATCACACACAA
TTGTTAAACCAGCCTCCAGGCTTTCAATTCCCTAAACACTTGGACattta
aatagatacatcattgaatatgCCTTTCATCTCTTTGTCCTTCAAagttt
ttgcgaagcgaatttatgagcgaagcagttttgctatattgtgtgcacgt
acctttatcGACCGCGGAGCGGTGTATTCAGAGACGTTTTGTATGGTGAA
AAATCTCGCATATTTGCGCGCGGTAATCCGTTCTCTAAAGTCACGGAAAG
CTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043689XLOC_043689Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070155-exon-scaffold_513-1491911889:448105..448457TCONS_00070155-exon-scaffold_513-1491911889:448105..448457Clytia hemisphaericaexon
TCONS_00070155-exon-scaffold_513-1510915933:448105..448457TCONS_00070155-exon-scaffold_513-1510915933:448105..448457Clytia hemisphaericaexon
TCONS_00070155-exon-scaffold_513-1575043694:448105..448457TCONS_00070155-exon-scaffold_513-1575043694:448105..448457Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:448105..448457 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0428644	0.481134	1.54199	0	3.62424	0.828836	3.43436	2.45713	1.29406	0	2.44317	1.52212	0.61842	1.07326	1.02716	0	1.27715	0.691805	1.27052	3.01615	0	0	0.503316	0	1.48446	1.13228	1.5915	0.486118	0.508679	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070155 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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