TCONS_00070140 (transcript) - C. hemisphaerica

Overview
NameTCONS_00070140
Unique NameTCONS_00070140
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length449

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00070140 ID=TCONS_00070140|Name=TCONS_00070140|organism=Clytia hemisphaerica|type=transcript|length=449bp
ATTGGTCGACTTTCGTTGCAAATTCAATGGAGTGTAATTTGATTGTCAGT
GAACTTGTGTGCAATGTGATCTTGCTTGAAGGCTTTTCGAACAACCTCTC
CTGTGTGGGCATTGAGNTTTCGTTGCAAATCCAATGGAGTGTAATTTGAT
TGTCAGTGAACTTGTGTGCAATGTGATCTTGCTTGAAGGCTTTTCGAACA
ACCTCTCCTGTGTGGGCATTGAGAACTGCAGCTGCCAGCTCTCCTCTTGG
TTGTGTTGTATCGTTTAGTAACTTTGATCGAGCAAAGATGAGTTGACAAG
AATAGCCATCTGGTACTGGGAATCGAACGTAGATTGCTGAACAGATCATT
GATGGACTGGCATCAGCAAAGTCGAGGGTGTCGATCTTCAGTGATGTTGC
ATCTTGTGGAACAATGGCTCGTTGATATGTGATCGTCTTGATCTCCTCC
Run BLAST on NCBI

protein sequence of TCONS_00070140-protein

>TCONS_00070140-protein ID=TCONS_00070140-protein|Name=TCONS_00070140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
EEIKTITYQRAIVPQDATSLKIDTLDFADASPSMICSAIYVRFPVPDGYS
CQLIFARSKLLNDTTQPRGELAAAVLNAHTGEVVRKAFKQDHIAHKFTDN
QITLHWICNEXSMPTQERLFEKPSSKITLHTSSLTIKLHSIEFATKVDQ
Run BLAST on NCBI

transcript from alignment at scaffold_513:284332..284780

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00070140 ID=TCONS_00070140|Name=TCONS_00070140|organism=Clytia hemisphaerica|type=transcript|length=449bp|location=Sequence derived from alignment at scaffold_513:284332..284780 (Clytia hemisphaerica)
GGAGGAGATCAAGACGATCACATATCAACGAGCCATTGTTCCACAAGATG
CAACATCACTGAAGATCGACACCCTCGACTTTGCTGATGCCAGTCCATCA
ATGATCTGTTCAGCAATCTACGTTCGATTCCCAGTACCAGATGGCTATTC
TTGTCAACTCATCTTTGCTCGATCAAAGTTACTAAACGATACAACACAAC
CAAGAGGAGAGCTGGCAGCTGCAGTTCTCAATGCCCACACAGGAGAGGTT
GTTCGAAAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCACTGACAA
TCAAATTACACTCCATTGGATTTGCAACGAAANCTCAATGCCCACACAGG
AGAGGTTGTTCGAAAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCA
CTGACAATCAAATTACACTCCATTGAATTTGCAACGAAAGTCGACCAAT

Coding sequence (CDS) from alignment at scaffold_513:284332..284780

>TCONS_00070140 ID=TCONS_00070140|Name=TCONS_00070140|organism=Clytia hemisphaerica|type=CDS|length=447bp|location=Sequence derived from alignment at scaffold_513:284332..284780 (Clytia hemisphaerica)
GAGGAGATCAAGACGATCACATATCAACGAGCCATTGTTCCACAAGATGC
AACATCACTGAAGATCGACACCCTCGACTTTGCTGATGCCAGTCCATCAA
TGATCTGTTCAGCAATCTACGTTCGATTCCCAGTACCAGATGGCTATTCT
TGTCAACTCATCTTTGCTCGATCAAAGTTACTAAACGATACAACACAACC
AAGAGGAGAGCTGGCAGCTGCAGTTCTCAATGCCCACACAGGAGAGGTTG
TTCGAAAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCACTGACAAT
CAAATTACACTCCATTGGATTTGCAACGAAANCTCAATGCCCACACAGGA
GAGGTTGTTCGAAAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCAC
TGACAATCAAATTACACTCCATTGAATTTGCAACGAAAGTCGACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_043674XLOC_043674Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070140-proteinTCONS_00070140-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00070140-exon-scaffold_513-1491911889:284332..284780TCONS_00070140-exon-scaffold_513-1491911889:284332..284780Clytia hemisphaericaexon
TCONS_00070140-exon-scaffold_513-1510915933:284332..284780TCONS_00070140-exon-scaffold_513-1510915933:284332..284780Clytia hemisphaericaexon
TCONS_00070140-exon-scaffold_513-1575043694:284332..284780TCONS_00070140-exon-scaffold_513-1575043694:284332..284780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_513supercontigscaffold_513:284332..284780 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.42483	1.72374	0.598154	0.335226	0.797395	0.918876	0.313665	1.16303	1.26781	1.21359	0.341939	1.23715	0.196626	0	0.0839393	0.360319	0.110971	0.113742	0	0	0.766671	0.357864	0.853624	0.236717	0.446769	0.308344	3.17201	2.83356	0.492219	0.138624
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008042Retrotrans_Pao
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00070140 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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