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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070115 ID=TCONS_00070115|Name=TCONS_00070115|organism=Clytia hemisphaerica|type=transcript|length=2739bpRun BLAST on NCBI protein sequence of TCONS_00070115-protein >TCONS_00070115-protein ID=TCONS_00070115-protein|Name=TCONS_00070115-protein|organism=Clytia hemisphaerica|type=polypeptide|length=595bp MNEEEVDVNLFAPDGDEDDFENGDSGHDQININSKFALVSPNASEYTCLVRun BLAST on NCBI transcript from alignment at scaffold_513:397190..410324- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00070115 ID=TCONS_00070115|Name=TCONS_00070115|organism=Clytia hemisphaerica|type=transcript|length=13135bp|location=Sequence derived from alignment at scaffold_513:397190..410324- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_513:397190..410324- >TCONS_00070115 ID=TCONS_00070115|Name=TCONS_00070115|organism=Clytia hemisphaerica|type=CDS|length=17880bp|location=Sequence derived from alignment at scaffold_513:397190..410324- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00070115 vs. Swiss-Prot (Human)
Match: GTPB1 (GTP-binding protein 1 OS=Homo sapiens GN=GTPBP1 PE=1 SV=3) HSP 1 Score: 712.22 bits (1837), Expect = 0.000e+0 Identity = 369/560 (65.89%), Postives = 455/560 (81.25%), Query Frame = 3
Query: 408 DEDDFENGDS--GHDQININSKFALVSPNASEYTCLVKKVQDLIEEGQGETIYEIGVDEKG-ESGLNDEDFKASIATLQSIAEQLNCQINMLREKDIETRKTAEFLIRGNLVEEDFSEVRVAVVGNVDAGKSTLLGVLTHGSLDDGRGTARLKLFRHKHEAETGRTSSVGNDILGFDSKGDIVNKPDKHSGALDWTQICKESSKVVTFIDLAGHEKYLKTTVFGMTGHAPDFAMLMVGSNAGIVGMTKEHLGLALALNVPVFVAVTKIDMCPPNVLQETMKLLCRILKSPGCRKIPVIVSNKDDVIVSATNFSSERICPIFQISNVTGENXXXXXXXXXXXSVRGQYVSSKPPLFQIDDTYXXXXXXXXXXXXXMQGVIRLNDILLLGPDSTGAFQPVPIKSIHRKRLPVKEVRAGQTASFSMKKIKRQDIRKGMVLAGQDLEPRATWEFDADVLVLHHPTTISAKYQAMVHCGSLRQTATIVRMDKEHLRTGDKASCRFRFMKSAEYITIGTKMIFREGRTKAVGTITKLHEEVAGRSTHNTRQNKQFKALMHQRGKGG 2078
D D E+G++ G ++++ SK LVSP + +Y L++++ + ++EG GETIY IG G E GL++ D +AS AT++S+AEQ+ + +LRE+ + ++L+R + + DF EVRVAVVGNVDAGKSTLLGVLTHG LD+GRG AR KLFRHKHE E+GRTSSVGNDILGFDS+G++VNKPD H G+L+WT+IC++S+KV+TFIDLAGHEKYLKTTVFGMTGH PDF MLMVGSNAGIVGMTKEHLGLALALNVPVFV VTKIDMCP N+LQET+KLL R+LKSPGCRKIPV+V +KDDVIV+A+NFSSER+CPIFQISNVTGENLDLLK FLNLLS R Y +P FQIDDTYSV GVGTVVSGTT++G+I+LND LLLGPD G F + +KSIHRKR+PVKEVR GQTASF++KKIKR IRKGMV+ L P+A+WEF+A++LVLHHPTTIS +YQAMVHCGS+RQTATI+ MDK+ LRTGDKA+ FRF+K+ EY+ I +++FREGRTKAVGTITKL + +T+N+ N + + + Q K G
Sbjct: 43 DSDCSEDGEALNGEPELDLTSKLVLVSPTSEQYDSLLRQMWERMDEGCGETIYVIGQGSDGTEYGLSEADMEASYATVKSMAEQIEADVILLRERQEAGGRVRDYLVRKRVGDNDFLEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGFARQKLFRHKHEIESGRTSSVGNDILGFDSEGNVVNKPDSHGGSLEWTKICEKSTKVITFIDLAGHEKYLKTTVFGMTGHLPDFCMLMVGSNAGIVGMTKEHLGLALALNVPVFVVVTKIDMCPANILQETLKLLQRLLKSPGCRKIPVLVQSKDDVIVTASNFSSERMCPIFQISNVTGENLDLLKMFLNLLSPRTSYREEEPAEFQIDDTYSVPGVGTVVSGTTLRGLIKLNDTLLLGPDPLGNFLSIAVKSIHRKRMPVKEVRGGQTASFALKKIKRSSIRKGMVMVSPRLNPQASWEFEAEILVLHHPTTISPRYQAMVHCGSIRQTATILSMDKDCLRTGDKATVHFRFIKTPEYLHIDQRLVFREGRTKAVGTITKLLQ-----TTNNSPMNSKPQQIKMQSTKKG 597 The following BLAST results are available for this feature:
BLAST of TCONS_00070115 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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