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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070108 ID=TCONS_00070108|Name=TCONS_00070108|organism=Clytia hemisphaerica|type=transcript|length=2558bp
AGATTGTGTGAAAGATTGTGTGCTATCTCTCGTTTTCAAGGTCCAAATag
atacaaaaaaaattaaattaaatggAATTGAAGGTATCACCATCATTATC
TCACACCACTGAGAAAGTTTCAATCACGGGAAACGGATTCAAACCCGATT
CCCCGATCACAATACAAAGTACATTAATTTGTCTAGAAGAAGGATTCGAC
TTTCAATCTTATGCACACATTTACACGAACAGAGatggttgttttgattt
gaaaacaaatgAATCTGTTGGTGGAACTTATACTGGCATTGAAGACATGG
GGTTGTTTTGGTCCATGGAAAAACAAGGAAAAGCTTTTCCGATGTCAACT
TTTACCAATGGTTTACAAAATCTTAGGTATTGTTTTAGTGTCTTCGATGG
TCACGTGGACAAATTTGAAGGTCATACAGGAAATGCTAAAGTTGTGATTA
CACGATACATAGCTCGTGCCGTTGAACGAATTCTTTTGaggaatcataat
ttcaaaGGAACTCTTTTTGTGCCAGAGCGTGCTACAAAAGCCCCTGCCAT
TATCACTTTGTTAGGTggtaataagaaaaaaaacgtgaaaGAGCATTTTG
CTTCGTACTTGGCTCATCAAGGCTTTGTCACCTTAGCTCTGGCTTTCTTT
GGAGTTGAAGGTTTGCCAAAAATGTATGACGAATCTCCAATACGAATGGA
ATATTTCGAAGAAGCTATCGAATTTCTACGGCAACATGACTCTGTGGATC
CAGAGAAGATTGGTGTTTTGGGATCTTCAAAAGGCGGTGATATTGCTTAC
GCAATGATGTCACATTTACCACAAATCAAAGCTGTGTGTTGCATGAATGG
ATGTATAGCACCACTAGGCTCGGACGTTTTATACAAAGGGTATCGGACAC
CTAAGATTCCTGGTGACATATCGAAGGTACGTTTCATAACCGATAACGTA
GTCGACACCATCCGCACAGTCAATGATCCTTATGACCATTCTGAATGTAT
CCATCAAATTCATCAATCCAAAGCTGACCTCTTTATAGTGGTGAGTCTAA
AAGACACCATCTTTCCTGTGTCAAGACATGCTCAATTAGCAAAACAACGT
ATGGATGAAGCTGGCAAAATCAATTACCAAATCATAGAGTATCAAAATAT
GGGGCATTTAATCGAGTTACCGAACTTGCCAATCTGTTTGTATGATAAAC
ATCCTTTGTTTGAAGGCTTAATGCTTTTCTTTGGTGGTGATGACAAAAAG
TTGATAAGTAAAGATCATGTTTCTGTTTGGACAGATGTTGTAAAGTTCTT
CAAGTCTTCTTTCACCGTTGATACTGACAATACCAAATCATGTATGATTG
AAAGTAAGTTGTAACATAACCGTTTGGATACTTTTGATTTCATGGTACAA
TATTTCAAATAGTAACAATTTGACGACATACCATATAATGAAGTCGTATG
AGTcgaaaagatttgtttttatttttagataattttttttgttcaatgGG
TTGGACTTAtgaaaatgttggtttgccgtcagccAACCGACTCTTCTCTA
ATCTTGCCGAcctaaaaacttttattacTATTTCGAcgaagagatttttt
tttcttcaaaaattacaaaattccATGAATGACCAAATAAAATTCCGACT
Gatcgacccacctccaaaatctagcctcgggtgacggcaaaccaagagtt
tttaagtccagccttgTGTATAAGATATGCTAAATAGATGTAGATTTATa
gatgtaatagttttattttcGATAATATAATTGTGACATGTTTATAGTTG
ATAATATTTTGTGTTGCGTTTTAAGATATGAAATGCCTATATAgatttag
gcgagaccaatttgattagttgttttatgggcccgaccgaccctgaaatt
ccaaatatcgaaatagaaataaaattgattttgctagTGACTTTATTCAT
AGTTGGTAATTTTGTGTGTTTTATTTAAGATATGTTATGTAGATTTGTAG
GAGTTAtagttttattttctatttcgacAATTTTAATGTCTGCAATATAA
CTGTGACATATTTATAGTTGGTGATTTTTTGTGTAGCATTTAAGATATGC
TATGCAGATGTAGATTTGTAGGAGTTGtagttttattttctatttcgacA
ATTTTAATGTCTGCAATATAATTGTGACATATTTATAGTTGGTGATTTTT
TGTGTAGCATTTTAAGATATGCTATGCATATGTAGATTTGTAGGAGTtat
agttttattttatatttcgaCAATTTTAATGTCTGCAATATAATTGTGAC
ATATTTATAGTTGGTGATTTTTTGTGTAGCATTTTAAGATATGCTATGCA
GATGTAGATTTGTAGGAGTTGtagttttattttctatttcgacAATTTTA
ATGTCTGTAATATAACTGTGACATATTTATAGTTGGTGATTTTTTGTGTA
GCATTTTAAGATATGCTATGCAGATGTAGATTTGTAGGAGTTGtagtttt
attttctatttccacAATTTTAATGTCTGCAATATAACTGTGACATATTT
ATAGTTGG Run BLAST on NCBI transcript from alignment at scaffold_513:339292..341849- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070108 ID=TCONS_00070108|Name=TCONS_00070108|organism=Clytia hemisphaerica|type=transcript|length=2558bp|location=Sequence derived from alignment at scaffold_513:339292..341849- (Clytia hemisphaerica)
AGATTGTGTGAAAGATTGTGTGCTATCTCTCGTTTTCAAGGTCCAAATAG
ATACAAAAAAAATTAAATTAAATGGAATTGAAGGTATCACCATCATTATC
TCACACCACTGAGAAAGTTTCAATCACGGGAAACGGATTCAAACCCGATT
CCCCGATCACAATACAAAGTACATTAATTTGTCTAGAAGAAGGATTCGAC
TTTCAATCTTATGCACACATTTACACGAACAGAGATGGTTGTTTTGATTT
GAAAACAAATGAATCTGTTGGTGGAACTTATACTGGCATTGAAGACATGG
GGTTGTTTTGGTCCATGGAAAAACAAGGAAAAGCTTTTCCGATGTCAACT
TTTACCAATGGTTTACAAAATCTTAGGTATTGTTTTAGTGTCTTCGATGG
TCACGTGGACAAATTTGAAGGTCATACAGGAAATGCTAAAGTTGTGATTA
CACGATACATAGCTCGTGCCGTTGAACGAATTCTTTTGAGGAATCATAAT
TTCAAAGGAACTCTTTTTGTGCCAGAGCGTGCTACAAAAGCCCCTGCCAT
TATCACTTTGTTAGGTGGTAATAAGAAAAAAAACGTGAAAGAGCATTTTG
CTTCGTACTTGGCTCATCAAGGCTTTGTCACCTTAGCTCTGGCTTTCTTT
GGAGTTGAAGGTTTGCCAAAAATGTATGACGAATCTCCAATACGAATGGA
ATATTTCGAAGAAGCTATCGAATTTCTACGGCAACATGACTCTGTGGATC
CAGAGAAGATTGGTGTTTTGGGATCTTCAAAAGGCGGTGATATTGCTTAC
GCAATGATGTCACATTTACCACAAATCAAAGCTGTGTGTTGCATGAATGG
ATGTATAGCACCACTAGGCTCGGACGTTTTATACAAAGGGTATCGGACAC
CTAAGATTCCTGGTGACATATCGAAGGTACGTTTCATAACCGATAACGTA
GTCGACACCATCCGCACAGTCAATGATCCTTATGACCATTCTGAATGTAT
CCATCAAATTCATCAATCCAAAGCTGACCTCTTTATAGTGGTGAGTCTAA
AAGACACCATCTTTCCTGTGTCAAGACATGCTCAATTAGCAAAACAACGT
ATGGATGAAGCTGGCAAAATCAATTACCAAATCATAGAGTATCAAAATAT
GGGGCATTTAATCGAGTTACCGAACTTGCCAATCTGTTTGTATGATAAAC
ATCCTTTGTTTGAAGGCTTAATGCTTTTCTTTGGTGGTGATGACAAAAAG
TTGATAAGTAAAGATCATGTTTCTGTTTGGACAGATGTTGTAAAGTTCTT
CAAGTCTTCTTTCACCGTTGATACTGACAATACCAAATCATGTATGATTG
AAAGTAAGTTGTAACATAACCGTTTGGATACTTTTGATTTCATGGTACAA
TATTTCAAATAGTAACAATTTGACGACATACCATATAATGAAGTCGTATG
AGTCGAAAAGATTTGTTTTTATTTTTAGATAATTTTTTTTGTTCAATGGG
TTGGACTTATGAAAATGTTGGTTTGCCGTCAGCCAACCGACTCTTCTCTA
ATCTTGCCGACCTAAAAACTTTTATTACTATTTCGACGAAGAGATTTTTT
TTTCTTCAAAAATTACAAAATTCCATGAATGACCAAATAAAATTCCGACT
GATCGACCCACCTCCAAAATCTAGCCTCGGGTGACGGCAAACCAAGAGTT
TTTAAGTCCAGCCTTGTGTATAAGATATGCTAAATAGATGTAGATTTATA
GATGTAATAGTTTTATTTTCGATAATATAATTGTGACATGTTTATAGTTG
ATAATATTTTGTGTTGCGTTTTAAGATATGAAATGCCTATATAGATTTAG
GCGAGACCAATTTGATTAGTTGTTTTATGGGCCCGACCGACCCTGAAATT
CCAAATATCGAAATAGAAATAAAATTGATTTTGCTAGTGACTTTATTCAT
AGTTGGTAATTTTGTGTGTTTTATTTAAGATATGTTATGTAGATTTGTAG
GAGTTATAGTTTTATTTTCTATTTCGACAATTTTAATGTCTGCAATATAA
CTGTGACATATTTATAGTTGGTGATTTTTTGTGTAGCATTTAAGATATGC
TATGCAGATGTAGATTTGTAGGAGTTGTAGTTTTATTTTCTATTTCGACA
ATTTTAATGTCTGCAATATAATTGTGACATATTTATAGTTGGTGATTTTT
TGTGTAGCATTTTAAGATATGCTATGCATATGTAGATTTGTAGGAGTTAT
AGTTTTATTTTATATTTCGACAATTTTAATGTCTGCAATATAATTGTGAC
ATATTTATAGTTGGTGATTTTTTGTGTAGCATTTTAAGATATGCTATGCA
GATGTAGATTTGTAGGAGTTGTAGTTTTATTTTCTATTTCGACAATTTTA
ATGTCTGTAATATAACTGTGACATATTTATAGTTGGTGATTTTTTGTGTA
GCATTTTAAGATATGCTATGCAGATGTAGATTTGTAGGAGTTGTAGTTTT
ATTTTCTATTTCCACAATTTTAATGTCTGCAATATAACTGTGACATATTT
ATAGTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070108-exon-scaffold_513-1575043694:339292..341849 | TCONS_00070108-exon-scaffold_513-1575043694:339292..341849 | Clytia hemisphaerica | exon |
| TCONS_00070108-exon-scaffold_513-1510915933:339292..341849 | TCONS_00070108-exon-scaffold_513-1510915933:339292..341849 | Clytia hemisphaerica | exon |
| TCONS_00070108-exon-scaffold_513-1491911889:339292..341849 | TCONS_00070108-exon-scaffold_513-1491911889:339292..341849 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:339292..341849 - |
Blast
BLAST of TCONS_00070108 vs. Swiss-Prot (Human)
Match: ACOT1 (Acyl-coenzyme A thioesterase 1 OS=Homo sapiens GN=ACOT1 PE=1 SV=1) HSP 1 Score: 180.644 bits (457), Expect = 2.971e-49 Identity = 115/405 (28.40%), Postives = 200/405 (49.38%), Query Frame = 3
Query: 111 EKVSITGNGFKPDSPITIQSTLICLEEGFDFQSYAHIYTNRDGCFDLKTNESVGGTYTGIEDMGLFWSMEKQGKAFPMSTFTNGLQNLRYCFSVFDGHVDKFEGHTGNAKVVITR------YIARAVERILLRNHNFKGTLFVPERATKAPAIITLLGGNKKKNVKEHFASYLAHQGFVTLALAFFGVEGLPKMYDESPIRMEYFEEAIEFLRQHDSVDPEKIGVLGSSKGGDIAYAMMSHLPQIKAVCCMNGCIAPLGSDVLYKGYRTPKIPGDISKVRFITDNVVDTIRTVNDPYD--HSECIHQIHQSKADLFIVVSLKDTIFPVSRHAQLAKQRMDEAGKINYQIIEYQNMGHLIELPNLPICLYDKHPLFEGLMLFFGGDDKKLISKDHVSVWTDVVKFF 1301
E V I G P+ P+T++++L E+G FQ++A + G DL+ ++GG++ G+E MGL W++E + P+ +++R +V ++ +GH + ++ R ++ V R +R +GTLF+P P I+ + G + E+ AS LA +GF +ALA++ E LPK + + +EYFEEA+ +L H V +G+LG SKGG++ +M S L I A +NG +A +G + YKG P + + ++++ D D + +N P + + + ++++ +V D + +A A +R+ G+ QII Y GH IE P P+C H L G + +GG+ + + V W + FF
Sbjct: 17 EPVRIAVRGLAPEQPVTLRASLRD-EKGALFQAHARYRADTLGELDLERAPALGGSFAGLEPMGLLWALEPEK---PLVRLVK--RDVRTPLAV---ELEVLDGHDPDPGRLLCRVRHERYFLPPGVRREPVRAGRVRGTLFLPPEPGPFPGIVDMFGTGG--GLLEYRASLLAGKGFAVMALAYYNYEDLPKTMET--LHLEYFEEAVNYLLSHPEVKGPGVGLLGISKGGELCLSMASFLKGITAAVVINGSVANVGGTLRYKGETLPPVGVNRNRIKVTKDGYADIVDVLNSPLEGPDQKSFIPVERAESTFLFLVGQDDHNWKSEFYANEACKRLQAHGRRKPQIICYPETGHYIEPPYFPLCRASLHALV-GSPIIWGGEPRAH-AMAQVDAWKQLQTFF 406
The following BLAST results are available for this feature:
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