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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00070085 ID=TCONS_00070085|Name=TCONS_00070085|organism=Clytia hemisphaerica|type=transcript|length=1050bp
TGTTGAATTTGTGACCAAACAATTGAGCATTGCTTCAACATTGGATAGTG
TTGAATTCTTTTTGTATGATTCAGCTGGCAAAGAAGAATTTGGTGATATT
GTTGACGTTCATATGAAAGATGCTAAGATCATTGTTTTggtttatgacgt
cacaaatatAGATTCTTTTGAAAACTTGTCAGAATGGTATAAGAAACTAG
AGGCTGCCAATAATGGAAAAACTTTACATGGTGCTATTATAGGTAACAAA
GTAGATTTAACAGATCGCCAAGTGGTGACCAGTGAGATGGGACAAAATTT
GGCTGACCAATTACATCTGCATTTCTTTGAATGTTCTGCTAAAGATATGA
GGAATATTGATGCGCCATTTCAAACAATTGCAAAAGATTATTATGATCGA
GTCAATGAAGTACCatcttgatcaaaaataaaattgtttaaaaaatctaT
CTGTAAATAGAGAAATCGCCCCTTCTCACTGACACAGTTGGACCCCTTCC
CACTTGgtaaatttgccaaaatattgtccccagtgGATAATTATAATCCA
ATTTTTTCCccattgaaaaatctcaaataaaccaatcctcactgcaaaat
attatgcttttttcccatccccactagattttctgacttgaaaacaaaag
aatttaaatccccaacCATAAAAGATATGGAAATATAAATCCCCATCAAT
TTTCAGTCCATAacttttacccccactggtTGAAAATACCCTACCAGGTC
TGCGAGAAGGGGTTCTTTCCAAAGAACAACGGTAAAAAACGCTGTTTCAA
TGTTCGCCTAAAGTTCAACAGAACGTTATGGATGTTGGGAGAGCATTGGA
TGGATGTATCACAAGTATAAAGTGACATAATTTTATGAATGAATTGTAAA
TATGAACAcgtgttttgtttttatcaatgcTGTTACAATGTTACAAGTAT
TGTAATTATTTATNAAAcacgtgtttttgtttttatcaatgaTGTTACAA
TGTTACAAGTATTGTAAATATTTATGAAGAAAAGATTTTAACTTCCTTAA Run BLAST on NCBI protein sequence of TCONS_00070085-protein >TCONS_00070085-protein ID=TCONS_00070085-protein|Name=TCONS_00070085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
VEFVTKQLSIASTLDSVEFFLYDSAGKEEFGDIVDVHMKDAKIIVLVYDV
TNIDSFENLSEWYKKLEAANNGKTLHGAIIGNKVDLTDRQVVTSEMGQNL
ADQLHLHFFECSAKDMRNIDAPFQTIAKDYYDRVNEVPS Run BLAST on NCBI transcript from alignment at scaffold_513:605468..608978+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00070085 ID=TCONS_00070085|Name=TCONS_00070085|organism=Clytia hemisphaerica|type=transcript|length=3511bp|location=Sequence derived from alignment at scaffold_513:605468..608978+ (Clytia hemisphaerica)
TGTTGAATTTGTGACCAAACAATTGAGCATTGCTTCAACATTGGATAGTG
TTGAATTCTTTTTGTATGATTCAGCTGGCAAAGAAGAATTTGGTGATATT
GTTGACGTTCATGTATGTAATGTAATATATAATTgcccaaatttgaacca
aaaagCAATTACTTGAATTGCAAatctaaaaaaaagtaaaaggaaATTTG
TCcctgttacacgttttttataagaacatccaaaatatttgaagccttcg
gatgtttttaacatgctcttattttcaccatttttttagcattttcgtcc
atttttctaaaaaattgggtattttagagtcTGCACAACCTTAAAAtgtc
ttaacttgttcttaacattttggtcatcaaagccttatgattttatatag
tttgttcttataaaaaaacatatatttgATTGCAAATACCTTGCTCATCT
TCTTCAGATGAAAGATGCTAAGATCATTGTTTTggtttatgacgtcacaa
atatAGATTCTTTTGAAAACTTGTCAGAATGGTATAAGAAACTAGAGGCT
GCCAATAATGGAAAAACTTTACATGGTAAGagaattctttttcattttat
cattaCCTTCTTAAATATCAGACGAATAGGACATTTTTCGATAAACAGTT
AATTTCTAGGTAAATTTAGGCTCTGTTCTGAATTTAAGTCCGTCCGGCTT
TAACtggatatttgttttttttacaagcaCTTTATTTTCATGTTTGTTTT
GTCAAAAAGAAATGGTTTGTACTTTTAAAGAAAGACATTATAGCTACTAT
TATCTAAAAGAAACTGgacgaaatataaataaagTCGTTGATACACTTTA
ATTGTTATAAAACGTCAAAATCCCTTCAACTTTAATGTCTTCCACTGACC
CAACAGCTggttggttgaaagtgacgtaaaatcaatcaatacgtcactta
caaccaatccaCTGTTAGGTCCATGTTGTAATGTaagaagacattgtaat
ggtgcatatcataaataggaaaataaacatttttgtttcttcttcatccT
CAGGTGCTATTATAGGTAACAAAGTAGATTTAACAGATCGCCAAGTGGTG
ACCAGTGAGATGGGACAAAATTTGGCTGACCAATTACATCTGCATTTCTT
TGAATGTTCTGCTGTAAGAATTTtttcttgtttactttttaatcggatta
aatttgcaagattaaatttcgcgaaattttctggatttaattttgcgagt
cagagttttgagaaatttcgcgtggatttaatttcgcaaataaGCATGAA
AACAActgaaaaatagccatttttgccacaaatggaGACTTTAGACTGGT
TTTCCGCCGAAAATGCAATttattaatccgattaaagtattttCCCTCTT
TTAATAAAAACTGTTCTTTTATATAATGTGGGCTATTCGGTGGTTTCCAG
GGAAATCTCGTAATTTTGATGGTATTAAGTTGTTCTCGGGAAAATTCGTA
CTTTTCTATGCAATTCCCGAAAGGCGGTTGGGTTCATGGTGTACCCGAAT
CCGCCATTCTGTCAATTTTTCCCCAGTATCCGTCACACCCAGCGTCAAAA
CGCGAGTTTTTCGCCTAAAATTCCatagattttgactttttggtgCCAAT
CACGAAATTCCTACCGATTTTTTGCTCTTAAATCCAATTTTCTGGACAAA
AAAAACCCAAATCGTCCGTCTCCGACAAAGGATCTAAATTCCACTATTCT
CTCCAGATTGTCGGTGAAATCCGCCATTCCGGACGAAGAAAAGACATTTT
CTTCCCCTCTGTCAACCTTAAAACCTTAAAACATCTTCTCTAACCAATGA
CTATCTTTTTTCGGCTTTTGATTTCAAGGAACATTTTATTGGTCATGGGC
TTAGGATTTCAATTATAGTAGACTCCCAAGTGCCGTAGCTACCCCTTGGT
ATTGCCTCCCCCAATAATTCTTccagaaatgttttttttatgaaatggaa
aattgttctgttaaaaatttatttctcCAGCCATTTTTTGCGATTCTATT
TTAAAAATTCCCCCCTCGGGctaaaccatggttggccctcgcggtgtcac
taaacctCACCCCCCCCCAATATCAAAATGCACTGCTCCCTGGTATTCGA
ACATCCGGGTACTCAAAATTTCGGTTATCTGAAGTAAAATGGAATTCCCT
TGGAAAACACTCTCTTTTATTCTAAAGTAGAgttattttaattttcagat
tttcaataACCCCTGTTGAGCAAAATTCGGGCCAAGCTTCCCTCAGTTAT
TCAAAACTAGAATATAGCCACTGAATATAAAATTGCCTTTTCTGAGACCT
TTTTACCTGTAAATTGCCAATCATATCCTAGCAATACTCAAAACTTCCAC
AAaaatgccatagttttgtttgAAGCATGATAAATTAAGGTTTGGTTTGG
GTCTAAACCTAGGCATGCCATGAAAATATCTCAAGATAAATTTTCCCTGA
AAAACTTAAGATTATTAAGTAGATTTAGAGTAGAGTagatttatttgaat
tttcagtttttcaaagAGGTTTCTAACCCCTGTTTTCAAGATGAATTTTC
GCTGAAAAACGTAAGAATATCTAGGTatgataaataaaaacacgctactc
ttataagaaaaatgtgtGTACCGTAAGTAAGATTTTTAATAAACATTGCT
TGCTGGTTTAAAATTATATGTCATTTCAAACTCAATTAGTTCCAGATATC
ggattaaaaagaaaacaatactaaaatcaatttatttcaaacattttata
GAAAGATATGAGGAATATTGATGCGCCATTTCAAACAATTGCAAAAGATT
ATTATGATCGAGTCAATGAAGTACCatcttgatcaaaaataaaattgttt
aaaaaatctaTCTGTAAATAGAGAAATCGCCCCTTCTCACTGACACAGTT
GGACCCCTTCCCACTTGgtaaatttgccaaaatattgtccccagtgGATA
ATTATAATCCAATTTTTTCCccattgaaaaatctcaaataaaccaatcct
cactgcaaaatattatgcttttttcccatccccactagattttctgactt
gaaaacaaaagaatttaaatccccaacCATAAAAGATATGGAAATATAAA
TCCCCATCAATTTTCAGTCCATAacttttacccccactggtTGAAAATAC
CCTACCAGGTCTGCGAGAAGGGGTTCTTTCCAAAGAACAACGGTAAAAAA
CGCTGTTTCAATGTTCGCCTAAAGTTCAACAGAACGTTATGGATGTTGGG
AGAGCATTGGATGGATGTATCACAAGTATAAAGTGACATAATTTTATGAA
TGAATTGTAAATATGAACAcgtgttttgtttttatcaatgcTGTTACAAT
GTTACAAGTATTGTAATTATTTATNAAAcacgtgtttttgtttttatcaa
tgaTGTTACAATGTTACAAGTATTGTAAATATTTATGAAGAAAAGATTTT
AACTTCCTTAA Coding sequence (CDS) from alignment at scaffold_513:605468..608978+ >TCONS_00070085 ID=TCONS_00070085|Name=TCONS_00070085|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at scaffold_513:605468..608978+ (Clytia hemisphaerica)
GTTGAATTTGTGACCAAACAATTGAGCATTGCTTCAACATTGGATAGTGT
TGAATTCTTTTTGTATGATTCAGCTGGCAAAGAAGAATTTGGTGATATTG
TTGACGTTCATATGAAAGATGCTAAGATCATTGTTTTggtttatgacgtc
acaaatatAGATTCTTTTGAAAACTTGTCAGAATGGTATAAGAAACTAGA
GGCTGCCAATAATGGAAAAACTTTACATGGTGCTATTATAGGTAACAAAG
TAGATTTAACAGATCGCCAAGTGGTGACCAGTGAGATGGGACAAAATTTG
GCTGACCAATTACATCTGCATTTCTTTGAATGTTCTGCTAAAGATATGAG
GAATATTGATGCGCCATTTCAAACAATTGCAAAAGATTATTATGATCGAG
TCAATGAAGTACCatcttgaGTTGAATTTGTGACCAAACAATTGAGCATT
GCTTCAACATTGGATAGTGTTGAATTCTTTTTGTATGATTCAGCTGGCAA
AGAAGAATTTGGTGATATTGTTGACGTTCATATGAAAGATGCTAAGATCA
TTGTTTTggtttatgacgtcacaaatatAGATTCTTTTGAAAACTTGTCA
GAATGGTATAAGAAACTAGAGGCTGCCAATAATGGAAAAACTTTACATGG
TGCTATTATAGGTAACAAAGTAGATTTAACAGATCGCCAAGTGGTGACCA
GTGAGATGGGACAAAATTTGGCTGACCAATTACATCTGCATTTCTTTGAA
TGTTCTGCTAAAGATATGAGGAATATTGATGCGCCATTTCAAACAATTGC
AAAAGATTATTATGATCGAGTCAATGAAGTACCatcttgaGTTGAATTTG
TGACCAAACAATTGAGCATTGCTTCAACATTGGATAGTGTTGAATTCTTT
TTGTATGATTCAGCTGGCAAAGAAGAATTTGGTGATATTGTTGACGTTCA
TATGAAAGATGCTAAGATCATTGTTTTggtttatgacgtcacaaatatAG
ATTCTTTTGAAAACTTGTCAGAATGGTATAAGAAACTAGAGGCTGCCAAT
AATGGAAAAACTTTACATGGTGCTATTATAGGTAACAAAGTAGATTTAAC
AGATCGCCAAGTGGTGACCAGTGAGATGGGACAAAATTTGGCTGACCAAT
TACATCTGCATTTCTTTGAATGTTCTGCTAAAGATATGAGGAATATTGAT
GCGCCATTTCAAACAATTGCAAAAGATTATTATGATCGAGTCAATGAAGT
ACCatcttgaGTTGAATTTGTGACCAAACAATTGAGCATTGCTTCAACAT
TGGATAGTGTTGAATTCTTTTTGTATGATTCAGCTGGCAAAGAAGAATTT
GGTGATATTGTTGACGTTCATATGAAAGATGCTAAGATCATTGTTTTggt
ttatgacgtcacaaatatAGATTCTTTTGAAAACTTGTCAGAATGGTATA
AGAAACTAGAGGCTGCCAATAATGGAAAAACTTTACATGGTGCTATTATA
GGTAACAAAGTAGATTTAACAGATCGCCAAGTGGTGACCAGTGAGATGGG
ACAAAATTTGGCTGACCAATTACATCTGCATTTCTTTGAATGTTCTGCTA
AAGATATGAGGAATATTGATGCGCCATTTCAAACAATTGCAAAAGATTAT
TATGATCGAGTCAATGAAGTACCatcttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00070085-exon-scaffold_513-1491911889:605468..605579 | TCONS_00070085-exon-scaffold_513-1491911889:605468..605579 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1510915933:605468..605579 | TCONS_00070085-exon-scaffold_513-1510915933:605468..605579 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1575043694:605468..605579 | TCONS_00070085-exon-scaffold_513-1575043694:605468..605579 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1491911889:605925..606042 | TCONS_00070085-exon-scaffold_513-1491911889:605925..606042 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1510915933:605925..606042 | TCONS_00070085-exon-scaffold_513-1510915933:605925..606042 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1575043694:605925..606042 | TCONS_00070085-exon-scaffold_513-1575043694:605925..606042 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1491911889:606521..606630 | TCONS_00070085-exon-scaffold_513-1491911889:606521..606630 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1510915933:606521..606630 | TCONS_00070085-exon-scaffold_513-1510915933:606521..606630 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1575043694:606521..606630 | TCONS_00070085-exon-scaffold_513-1575043694:606521..606630 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1491911889:608269..608978 | TCONS_00070085-exon-scaffold_513-1491911889:608269..608978 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1510915933:608269..608978 | TCONS_00070085-exon-scaffold_513-1510915933:608269..608978 | Clytia hemisphaerica | exon |
| TCONS_00070085-exon-scaffold_513-1575043694:608269..608978 | TCONS_00070085-exon-scaffold_513-1575043694:608269..608978 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_513 | supercontig | scaffold_513:605468..608978 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
BLAST of TCONS_00070085 vs. Swiss-Prot (Human)
Match: IFT27 (Intraflagellar transport protein 27 homolog OS=Homo sapiens GN=IFT27 PE=1 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 5.806e-28 Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = 2
Query: 2 VEFVTKQLSIASTLDSVEFFLYDSAGKEEFGDIVDVHMKDAKIIVLVYDVTNIDSFENLSEWYKKLEAANNGKTLHGAIIGNKVDLTDRQVVTSEMGQNLADQLHLHFFECSAKDMRNIDAPFQTIAKDYYDRVNE 409
++ V K + + T DSVE F++DSAGKE F +++D + ++ LVYDVTN +SF N S+W +K + G +L G ++GNK DL R+ V S + A L FE S K+M N +APF +AK ++ E
Sbjct: 42 MDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRRAVDSAEARAWALGQGLECFETSVKEMENFEAPFHCLAKQFHQLYRE 177
The following BLAST results are available for this feature:
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