TCONS_00070085-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00070085-protein
Unique NameTCONS_00070085-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length139

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00070085-protein ID=TCONS_00070085-protein|Name=TCONS_00070085-protein|organism=Clytia hemisphaerica|type=polypeptide|length=139bp
VEFVTKQLSIASTLDSVEFFLYDSAGKEEFGDIVDVHMKDAKIIVLVYDV
TNIDSFENLSEWYKKLEAANNGKTLHGAIIGNKVDLTDRQVVTSEMGQNL
ADQLHLHFFECSAKDMRNIDAPFQTIAKDYYDRVNEVPS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_043638XLOC_043638Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00070085TCONS_00070085Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 73..86
score: 35.12
coord: 108..130
score: 34.39
coord: 10..32
score: 24.91
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 1..133
e-value: 3.0E-9
score: 5.7
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 2..133
e-value: 6.0E-8
score: 0.8
NoneNo IPR availableGENE3D3.40.50.300coord: 25..131
e-value: 5.7E-27
score: 93.2
NoneNo IPR availablePROSITEPS51419RABcoord: 1..139
score: 17.941
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 2..130
e-value: 4.5E-31
score: 107.5
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 3..134

Blast
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BLAST of TCONS_00070085-protein vs. Swiss-Prot (Human)
Match: IFT27 (Intraflagellar transport protein 27 homolog OS=Homo sapiens GN=IFT27 PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 2.074e-31
Identity = 54/136 (39.71%), Postives = 80/136 (58.82%), Query Frame = 0 
Query:    1 VEFVTKQLSIASTLDSVEFFLYDSAGKEEFGDIVDVHMKDAKIIVLVYDVTNIDSFENLSEWYKKLEAANNGKTLHGAIIGNKVDLTDRQVVTSEMGQNLADQLHLHFFECSAKDMRNIDAPFQTIAKDYYDRVNE 136
            ++ V K + +  T DSVE F++DSAGKE F +++D   +   ++ LVYDVTN +SF N S+W +K  +   G +L G ++GNK DL  R+ V S   +  A    L  FE S K+M N +APF  +AK ++    E
Sbjct:   42 MDLVVKTVPVPDTGDSVELFIFDSAGKELFSEMLDKLWESPNVLCLVYDVTNEESFNNCSKWLEKARSQAPGISLPGVLVGNKTDLAGRRAVDSAEARAWALGQGLECFETSVKEMENFEAPFHCLAKQFHQLYRE 177
The following BLAST results are available for this feature:
BLAST of TCONS_00070085-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IFT272.074e-3139.71Intraflagellar transport protein 27 homolog OS=Hom... [more]
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